Literature DB >> 24464615

Crystal structure of a Schistosoma mansoni septin reveals the phenomenon of strand slippage in septins dependent on the nature of the bound nucleotide.

Ana E Zeraik1, Humberto M Pereira, Yuri V Santos, José Brandão-Neto, Michael Spoerner, Maiara S Santos, Luiz A Colnago, Richard C Garratt, Ana P U Araújo, Ricardo DeMarco.   

Abstract

Septins are filament-forming GTP-binding proteins involved in important cellular events, such as cytokinesis, barrier formation, and membrane remodeling. Here, we present two crystal structures of the GTPase domain of a Schistosoma mansoni septin (SmSEPT10), one bound to GDP and the other to GTP. The structures have been solved at an unprecedented resolution for septins (1.93 and 2.1 Å, respectively), which has allowed for unambiguous structural assignment of regions previously poorly defined. Consequently, we provide a reliable model for functional interpretation and a solid foundation for future structural studies. Upon comparing the two complexes, we observe for the first time the phenomenon of a strand slippage in septins. Such slippage generates a front-back communication mechanism between the G and NC interfaces. These data provide a novel mechanistic framework for the influence of nucleotide binding to the GTPase domain, opening new possibilities for the study of the dynamics of septin filaments.

Entities:  

Keywords:  Conformational Change; Crystal Structure; Filament; GTPase; GTPase Domain; Protein Conformation; Protein Structure; Schistosoma; Septin; X-ray Crystallography

Mesh:

Substances:

Year:  2014        PMID: 24464615      PMCID: PMC3953292          DOI: 10.1074/jbc.M113.525352

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

1.  Arf, Arl, Arp and Sar proteins: a family of GTP-binding proteins with a structural device for 'front-back' communication.

Authors:  Sebastiano Pasqualato; Louis Renault; Jacqueline Cherfils
Journal:  EMBO Rep       Date:  2002-11       Impact factor: 8.807

Review 2.  Intracellular magnesium and magnesium buffering.

Authors:  Robert D Grubbs
Journal:  Biometals       Date:  2002-09       Impact factor: 2.949

3.  Promiscuous interactions of human septins: the GTP binding domain of SEPT7 forms filaments within the crystal.

Authors:  Vitor Hugo Balasco Serrão; Fernando Alessandro; Victor Emanoel Armini Caldas; Rafaela Leite Marçal; Humberto D'Muniz Pereira; Otavio Henrique Thiemann; Richard Charles Garratt
Journal:  FEBS Lett       Date:  2011-11-03       Impact factor: 4.124

Review 4.  The septin family of GTPases: architecture and dynamics.

Authors:  Christine S Weirich; Jan P Erzberger; Yves Barral
Journal:  Nat Rev Mol Cell Biol       Date:  2008-05-14       Impact factor: 94.444

5.  Structural and biochemical properties of Sept7, a unique septin required for filament formation.

Authors:  Eldar Zent; Ingrid Vetter; Alfred Wittinghofer
Journal:  Biol Chem       Date:  2011-08       Impact factor: 3.915

6.  New insights into the phylogenetic distribution and evolutionary origins of the septins.

Authors:  Ryuichi Nishihama; Masayuki Onishi; John R Pringle
Journal:  Biol Chem       Date:  2011-08       Impact factor: 3.915

7.  An alternative conformation of the T-cell receptor alpha constant region.

Authors:  Gijs I van Boxel; Samantha Holmes; Lars Fugger; E Yvonne Jones
Journal:  J Mol Biol       Date:  2010-05-31       Impact factor: 5.469

Review 8.  Septins: the fourth component of the cytoskeleton.

Authors:  Serge Mostowy; Pascale Cossart
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-08       Impact factor: 94.444

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Analysis of septins across kingdoms reveals orthology and new motifs.

Authors:  Fangfang Pan; Russell L Malmberg; Michelle Momany
Journal:  BMC Evol Biol       Date:  2007-07-01       Impact factor: 3.260

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  14 in total

1.  High pressure 31P NMR spectroscopy on guanine nucleotides.

Authors:  Michael Spoerner; Matthias Karl; Pedro Lopes; Marcus Hoering; Karoline Loeffel; Andrea Nuehs; Joseph Adelsberger; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2016-12-23       Impact factor: 2.835

2.  A FRET-based method for monitoring septin polymerization and binding of septin-associated proteins.

Authors:  E A Booth; J Thorner
Journal:  Methods Cell Biol       Date:  2016-06-14       Impact factor: 1.441

3.  Filaments and fingers: Novel structural aspects of the single septin from Chlamydomonas reinhardtii.

Authors:  Andressa P A Pinto; Humberto M Pereira; Ana E Zeraik; Heloisa Ciol; Frederico M Ferreira; José Brandão-Neto; Ricardo DeMarco; Marcos V A S Navarro; Cristina Risi; Vitold E Galkin; Richard C Garratt; Ana P U Araujo
Journal:  J Biol Chem       Date:  2017-05-05       Impact factor: 5.157

4.  Lean forward: Genetic analysis of temperature-sensitive mutants unfolds the secrets of oligomeric protein complex assembly.

Authors:  Michael McMurray
Journal:  Bioessays       Date:  2014-07-22       Impact factor: 4.345

5.  Structural and thermodynamic analyses reveal critical features of glycopeptide recognition by the human PILRα immune cell receptor.

Authors:  Atsushi Furukawa; Kosuke Kakita; Tomoki Yamada; Mikihiro Ishizuka; Jiro Sakamoto; Nanao Hatori; Naoyoshi Maeda; Fumina Ohsaka; Takashi Saitoh; Takao Nomura; Kimiko Kuroki; Hisanori Nambu; Hisashi Arase; Shigeki Matsunaga; Masahiro Anada; Toyoyuki Ose; Shunichi Hashimoto; Katsumi Maenaka
Journal:  J Biol Chem       Date:  2017-10-18       Impact factor: 5.157

6.  Effects of Bni5 Binding on Septin Filament Organization.

Authors:  Elizabeth A Booth; Sarah M Sterling; Dustin Dovala; Eva Nogales; Jeremy Thorner
Journal:  J Mol Biol       Date:  2016-10-30       Impact factor: 5.469

Review 7.  Septin structure and filament assembly.

Authors:  Napoleão Fonseca Valadares; Humberto d' Muniz Pereira; Ana Paula Ulian Araujo; Richard Charles Garratt
Journal:  Biophys Rev       Date:  2017-09-13

8.  Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function.

Authors:  Taylor B Updegrove; Jailynn Harke; Vivek Anantharaman; Jin Yang; Nikhil Gopalan; Di Wu; Grzegorz Piszczek; David M Stevenson; Daniel Amador-Noguez; Jue D Wang; L Aravind; Kumaran S Ramamurthi
Journal:  Elife       Date:  2021-03-11       Impact factor: 8.140

9.  Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.

Authors:  Tobias Wauer; Kirby N Swatek; Jane L Wagstaff; Christina Gladkova; Jonathan N Pruneda; Martin A Michel; Malte Gersch; Christopher M Johnson; Stefan M V Freund; David Komander
Journal:  EMBO J       Date:  2014-12-19       Impact factor: 11.598

10.  A Förster Resonance Energy Transfer (FRET)-based System Provides Insight into the Ordered Assembly of Yeast Septin Hetero-octamers.

Authors:  Elizabeth A Booth; Eleanor W Vane; Dustin Dovala; Jeremy Thorner
Journal:  J Biol Chem       Date:  2015-09-28       Impact factor: 5.157

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