Literature DB >> 24463102

Insights into miRNA regulation of the human glycome.

Brian T Kasper1, Sujeethraj Koppolu1, Lara K Mahal2.   

Abstract

Glycosylation is an intricate process requiring the coordinated action of multiple proteins, including glycosyltransferases, glycosidases, sugar nucleotide transporters and trafficking proteins. Work by several groups points to a role for microRNA (miRNA) in controlling the levels of specific glycosyltransferases involved in cancer, neural migration and osteoblast formation. Recent work in our laboratory suggests that miRNA are a principal regulator of the glycome, translating genomic information into the glycocode through tuning of enzyme levels. Herein we overlay predicted miRNA regulation of glycosylation related genes (glycogenes) onto maps of the common N-linked and O-linked glycan biosynthetic pathways to identify key regulatory nodes of the glycome. Our analysis provides insights into glycan regulation and suggests that at the regulatory level, glycogenes are non-redundant.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Carbohydrate pathways; Glycan biosynthesis; Glycan regulation; Glycogenes; Glycosylation; MicroRNA; miRNA

Mesh:

Substances:

Year:  2014        PMID: 24463102      PMCID: PMC4015186          DOI: 10.1016/j.bbrc.2014.01.034

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  43 in total

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2.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

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Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

Review 3.  Proteoglycans in brain development.

Authors:  Nancy B Schwartz; Miriam Domowicz
Journal:  Glycoconj J       Date:  2004       Impact factor: 2.916

4.  Most mammalian mRNAs are conserved targets of microRNAs.

Authors:  Robin C Friedman; Kyle Kai-How Farh; Christopher B Burge; David P Bartel
Journal:  Genome Res       Date:  2008-10-27       Impact factor: 9.043

Review 5.  Role of glycosylation in development.

Authors:  Robert S Haltiwanger; John B Lowe
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

6.  Complex N-glycan number and degree of branching cooperate to regulate cell proliferation and differentiation.

Authors:  Ken S Lau; Emily A Partridge; Ani Grigorian; Cristina I Silvescu; Vernon N Reinhold; Michael Demetriou; James W Dennis
Journal:  Cell       Date:  2007-04-06       Impact factor: 41.582

7.  Global and local architecture of the mammalian microRNA-transcription factor regulatory network.

Authors:  Reut Shalgi; Daniel Lieber; Moshe Oren; Yitzhak Pilpel
Journal:  PLoS Comput Biol       Date:  2007-07       Impact factor: 4.475

8.  The microRNA.org resource: targets and expression.

Authors:  Doron Betel; Manda Wilson; Aaron Gabow; Debora S Marks; Chris Sander
Journal:  Nucleic Acids Res       Date:  2007-12-23       Impact factor: 16.971

9.  The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression.

Authors:  Lawrence S Hon; Zemin Zhang
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

Review 10.  Identifying miRNAs, targets and functions.

Authors:  Bing Liu; Jiuyong Li; Murray J Cairns
Journal:  Brief Bioinform       Date:  2012-11-22       Impact factor: 11.622

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  15 in total

Review 1.  Neurological aspects of human glycosylation disorders.

Authors:  Hudson H Freeze; Erik A Eklund; Bobby G Ng; Marc C Patterson
Journal:  Annu Rev Neurosci       Date:  2015-04-02       Impact factor: 12.449

Review 2.  Glycosaminoglycanomics: where we are.

Authors:  Sylvie Ricard-Blum; Frédérique Lisacek
Journal:  Glycoconj J       Date:  2016-11-30       Impact factor: 2.916

Review 3.  Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure.

Authors:  Sriram Neelamegham; Lara K Mahal
Journal:  Curr Opin Struct Biol       Date:  2016-10-13       Impact factor: 6.809

4.  Decreased expression of hepatocyte nuclear factor 4α (Hnf4α)/microRNA-122 (miR-122) axis in hepatitis B virus-associated hepatocellular carcinoma enhances potential oncogenic GALNT10 protein activity.

Authors:  Qian Wu; Hai-Ou Liu; Yi-Dong Liu; Wei-Si Liu; Deng Pan; Wei-Juan Zhang; Liu Yang; Qiang Fu; Jie-Jie Xu; Jian-Xin Gu
Journal:  J Biol Chem       Date:  2014-11-24       Impact factor: 5.157

5.  Expression of leukocyte adhesion-related glycosyltransferase genes in acute coronary syndrome patients.

Authors:  Irzal Hadžibegović; Zvonimir Vrselja; Gordan Lauc; Goran Curić
Journal:  Inflamm Res       Date:  2014-04-19       Impact factor: 4.575

6.  MicroRNA-424 Predicts a Role for β-1,4 Branched Glycosylation in Cell Cycle Progression.

Authors:  Christopher A Vaiana; Tomasz Kurcon; Lara K Mahal
Journal:  J Biol Chem       Date:  2015-11-20       Impact factor: 5.157

7.  Spatial N-glycomics of the human aortic valve in development and pediatric endstage congenital aortic valve stenosis.

Authors:  Peggi M Angel; Richard R Drake; Yeonhee Park; Cassandra L Clift; Connor West; Savanna Berkhiser; Gary Hardiman; Anand S Mehta; David P Bichell; Yan Ru Su
Journal:  J Mol Cell Cardiol       Date:  2021-01-29       Impact factor: 5.000

8.  miRNA proxy approach reveals hidden functions of glycosylation.

Authors:  Tomasz Kurcon; Zhongyin Liu; Anika V Paradkar; Christopher A Vaiana; Sujeethraj Koppolu; Praveen Agrawal; Lara K Mahal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

9.  The glycosyltransferase ST3GAL2 is regulated by miR-615-3p in the intestinal tract of Campylobacter jejuni infected mice.

Authors:  Greta Gölz; Soroush Sharbati; Lukas Hofmann; Thomas Alter; Ralf Einspanier; Stefan Bereswill; Markus M Heimesaat
Journal:  Gut Pathog       Date:  2021-06-28       Impact factor: 4.181

Review 10.  Enzymes for N-Glycan Branching and Their Genetic and Nongenetic Regulation in Cancer.

Authors:  Yasuhiko Kizuka; Naoyuki Taniguchi
Journal:  Biomolecules       Date:  2016-04-28
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