Literature DB >> 27744149

Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure.

Sriram Neelamegham1, Lara K Mahal2.   

Abstract

Glycosylation is a ubiquitous mammalian post-translational modification that both decorates a majority of expressed proteins and regulates their function. Cellular glycan biosynthesis is facilitated by a few hundred enzymes that are collectively termed 'glycoenzymes'. The expression and activity of these enzymes is controlled at the transcription, translation and post-translation levels. New wet-lab advances are providing analytical methods to collect large-scale data at these multiple levels, relational databases are starting to collate these results, and computer models are beginning to integrate this information across scales in order to gain new knowledge. These activities are likely to enable the qualitative and quantitative mapping of pathways regulating glycan production and function in proteins, cells and tissue.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27744149      PMCID: PMC5161581          DOI: 10.1016/j.sbi.2016.09.013

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  55 in total

Review 1.  Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data.

Authors:  Gang Liu; Sriram Neelamegham
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-04-13

Review 2.  Systems glycobiology: biochemical reaction networks regulating glycan structure and function.

Authors:  Sriram Neelamegham; Gang Liu
Journal:  Glycobiology       Date:  2011-03-24       Impact factor: 4.313

3.  Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network.

Authors:  Lesley T MacNeil; Carles Pons; H Efsun Arda; Gabrielle E Giese; Chad L Myers; Albertha J M Walhout
Journal:  Cell Syst       Date:  2015-08-26       Impact factor: 10.304

4.  Expression of Lea in gastric cancer cell lines depends on FUT3 expression regulated by promoter methylation.

Authors:  Jacinta Serpa; Patrícia Mesquita; Nuno Mendes; Carla Oliveira; Raquel Almeida; Filipe Santos-Silva; Celso A Reis; Jacques LePendu; Leonor David
Journal:  Cancer Lett       Date:  2006-01-19       Impact factor: 8.679

5.  Epigenetic silencing of the chaperone Cosmc in human leukocytes expressing tn antigen.

Authors:  Rongjuan Mi; Lina Song; Yingchun Wang; Xiaokun Ding; Junwei Zeng; Sylvain Lehoux; Rajindra P Aryal; Jianmei Wang; Vanja K Crew; Irma van Die; Arlene B Chapman; Richard D Cummings; Tongzhong Ju
Journal:  J Biol Chem       Date:  2012-10-03       Impact factor: 5.157

6.  Regulation of glycan structures in murine embryonic stem cells: combined transcript profiling of glycan-related genes and glycan structural analysis.

Authors:  Alison V Nairn; Kazuhiro Aoki; Mitche dela Rosa; Mindy Porterfield; Jae-Min Lim; Michael Kulik; J Michael Pierce; Lance Wells; Stephen Dalton; Michael Tiemeyer; Kelley W Moremen
Journal:  J Biol Chem       Date:  2012-09-17       Impact factor: 5.157

7.  Global comparisons of lectin-glycan interactions using a database of analyzed glycan array data.

Authors:  Doron Kletter; Sudhir Singh; Marshall Bern; Brian B Haab
Journal:  Mol Cell Proteomics       Date:  2013-02-11       Impact factor: 5.911

8.  The transcription factor ATF2 promotes melanoma metastasis by suppressing protein fucosylation.

Authors:  Eric Lau; Yongmei Feng; Giuseppina Claps; Michiko N Fukuda; Ally Perlina; Dylan Donn; Lucia Jilaveanu; Harriet Kluger; Hudson H Freeze; Ze'ev A Ronai
Journal:  Sci Signal       Date:  2015-12-08       Impact factor: 8.192

9.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  26 in total

Review 1.  Intestinal epithelial glycosylation in homeostasis and gut microbiota interactions in IBD.

Authors:  Matthew R Kudelka; Sean R Stowell; Richard D Cummings; Andrew S Neish
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-07-24       Impact factor: 46.802

Review 2.  From glycophenotyping by (plant) lectin histochemistry to defining functionality of glycans by pairing with endogenous lectins.

Authors:  Herbert Kaltner; Gabriel García Caballero; Anna-Kristin Ludwig; Joachim C Manning; Hans-Joachim Gabius
Journal:  Histochem Cell Biol       Date:  2018-05-05       Impact factor: 4.304

3.  Comparative Glycomics Analysis of Mass Spectrometry Data.

Authors:  Yusen Zhou; Sriram Neelamegham
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry.

Authors:  Haopeng Xiao; Fangxu Sun; Suttipong Suttapitugsakul; Ronghu Wu
Journal:  Mass Spectrom Rev       Date:  2019-01-03       Impact factor: 10.946

5.  Mass spectrometric analysis of the N-glycoproteome in statin-treated liver cells with two lectin-independent chemical enrichment methods.

Authors:  Haopeng Xiao; Ju Eun Hwang; Ronghu Wu
Journal:  Int J Mass Spectrom       Date:  2017-05-27       Impact factor: 1.986

6.  A Comprehensive, Open-source Platform for Mass Spectrometry-based Glycoproteomics Data Analysis.

Authors:  Gang Liu; Kai Cheng; Chi Y Lo; Jun Li; Jun Qu; Sriram Neelamegham
Journal:  Mol Cell Proteomics       Date:  2017-09-08       Impact factor: 5.911

7.  Thioglycosides Are Efficient Metabolic Decoys of Glycosylation that Reduce Selectin Dependent Leukocyte Adhesion.

Authors:  Shuen-Shiuan Wang; Xuefeng Gao; Virginia Del Solar; Xinheng Yu; Aristotelis Antonopoulos; Alan E Friedman; Eryn K Matich; G Ekin Atilla-Gokcumen; Mehrab Nasirikenari; Joseph T Lau; Anne Dell; Stuart M Haslam; Roger A Laine; Khushi L Matta; Sriram Neelamegham
Journal:  Cell Chem Biol       Date:  2018-10-18       Impact factor: 8.116

8.  XBP1s activation can globally remodel N-glycan structure distribution patterns.

Authors:  Madeline Y Wong; Kenny Chen; Aristotelis Antonopoulos; Brian T Kasper; Mahender B Dewal; Rebecca J Taylor; Charles A Whittaker; Pyae P Hein; Anne Dell; Joseph C Genereux; Stuart M Haslam; Lara K Mahal; Matthew D Shoulders
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-10       Impact factor: 11.205

9.  Resident and elicited murine macrophages differ in expression of their glycomes and glycan-binding proteins.

Authors:  Diane D Park; Jiaxuan Chen; Matthew R Kudelka; Nan Jia; Carolyn A Haller; Revanth Kosaraju; Alykhan M Premji; Melina Galizzi; Alison V Nairn; Kelley W Moremen; Richard D Cummings; Elliot L Chaikof
Journal:  Cell Chem Biol       Date:  2020-12-29       Impact factor: 8.116

10.  A GlycoGene CRISPR-Cas9 lentiviral library to study lectin binding and human glycan biosynthesis pathways.

Authors:  Yuqi Zhu; Theodore Groth; Anju Kelkar; Yusen Zhou; Sriram Neelamegham
Journal:  Glycobiology       Date:  2021-04-01       Impact factor: 4.313

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