Literature DB >> 24458646

Transmissible [corrected] dog cancer genome reveals the origin and history of an ancient cell lineage.

Elizabeth P Murchison1,2, David C Wedge1, Ludmil B Alexandrov1, Beiyuan Fu1, Inigo Martincorena1, Zemin Ning1, Jose M C Tubio1, Emma I Werner1, Jan Allen3, Andrigo Barboza De Nardi4, Edward M Donelan3, Gabriele Marino5, Ariberto Fassati6, Peter J Campbell1, Fengtang Yang1, Austin Burt7, Robin A Weiss6, Michael R Stratton1.   

Abstract

Canine transmissible venereal tumor (CTVT) is the oldest known somatic cell lineage. It is a transmissible cancer that propagates naturally in dogs. We sequenced the genomes of two CTVT tumors and found that CTVT has acquired 1.9 million somatic substitution mutations and bears evidence of exposure to ultraviolet light. CTVT is remarkably stable and lacks subclonal heterogeneity despite thousands of rearrangements, copy-number changes, and retrotransposon insertions. More than 10,000 genes carry nonsynonymous variants, and 646 genes have been lost. CTVT first arose in a dog with low genomic heterozygosity that may have lived about 11,000 years ago. The cancer spawned by this individual dispersed across continents about 500 years ago. Our results provide a genetic identikit of an ancient dog and demonstrate the robustness of mammalian somatic cells to survive for millennia despite a massive mutation burden.

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Year:  2014        PMID: 24458646      PMCID: PMC3918581          DOI: 10.1126/science.1247167

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  38 in total

1.  Sequence analysis of canine LINE-1 elements and p53 gene in canine transmissible venereal tumor.

Authors:  Young-Ki Choi; Chul-Joong Kim
Journal:  J Vet Sci       Date:  2002-12       Impact factor: 1.672

2.  Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Authors:  Kerstin Lindblad-Toh; Claire M Wade; Tarjei S Mikkelsen; Elinor K Karlsson; David B Jaffe; Michael Kamal; Michele Clamp; Jean L Chang; Edward J Kulbokas; Michael C Zody; Evan Mauceli; Xiaohui Xie; Matthew Breen; Robert K Wayne; Elaine A Ostrander; Chris P Ponting; Francis Galibert; Douglas R Smith; Pieter J DeJong; Ewen Kirkness; Pablo Alvarez; Tara Biagi; William Brockman; Jonathan Butler; Chee-Wye Chin; April Cook; James Cuff; Mark J Daly; David DeCaprio; Sante Gnerre; Manfred Grabherr; Manolis Kellis; Michael Kleber; Carolyne Bardeleben; Leo Goodstadt; Andreas Heger; Christophe Hitte; Lisa Kim; Klaus-Peter Koepfli; Heidi G Parker; John P Pollinger; Stephen M J Searle; Nathan B Sutter; Rachael Thomas; Caleb Webber; Jennifer Baldwin; Adal Abebe; Amr Abouelleil; Lynne Aftuck; Mostafa Ait-Zahra; Tyler Aldredge; Nicole Allen; Peter An; Scott Anderson; Claudel Antoine; Harindra Arachchi; Ali Aslam; Laura Ayotte; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Mostafa Benamara; Aaron Berlin; Daniel Bessette; Berta Blitshteyn; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Adam Brown; Patrick Cahill; Nadia Calixte; Jody Camarata; Yama Cheshatsang; Jeffrey Chu; Mieke Citroen; Alville Collymore; Patrick Cooke; Tenzin Dawoe; Riza Daza; Karin Decktor; Stuart DeGray; Norbu Dhargay; Kimberly Dooley; Kathleen Dooley; Passang Dorje; Kunsang Dorjee; Lester Dorris; Noah Duffey; Alan Dupes; Osebhajajeme Egbiremolen; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Patricia Ferreira; Sheila Fisher; Mike FitzGerald; Karen Foley; Chelsea Foley; Alicia Franke; Dennis Friedrich; Diane Gage; Manuel Garber; Gary Gearin; Georgia Giannoukos; Tina Goode; Audra Goyette; Joseph Graham; Edward Grandbois; Kunsang Gyaltsen; Nabil Hafez; Daniel Hagopian; Birhane Hagos; Jennifer Hall; Claire Healy; Ryan Hegarty; Tracey Honan; Andrea Horn; Nathan Houde; Leanne Hughes; Leigh Hunnicutt; M Husby; Benjamin Jester; Charlien Jones; Asha Kamat; Ben Kanga; Cristyn Kells; Dmitry Khazanovich; Alix Chinh Kieu; Peter Kisner; Mayank Kumar; Krista Lance; Thomas Landers; Marcia Lara; William Lee; Jean-Pierre Leger; Niall Lennon; Lisa Leuper; Sarah LeVine; Jinlei Liu; Xiaohong Liu; Yeshi Lokyitsang; Tashi Lokyitsang; Annie Lui; Jan Macdonald; John Major; Richard Marabella; Kebede Maru; Charles Matthews; Susan McDonough; Teena Mehta; James Meldrim; Alexandre Melnikov; Louis Meneus; Atanas Mihalev; Tanya Mihova; Karen Miller; Rachel Mittelman; Valentine Mlenga; Leonidas Mulrain; Glen Munson; Adam Navidi; Jerome Naylor; Tuyen Nguyen; Nga Nguyen; Cindy Nguyen; Thu Nguyen; Robert Nicol; Nyima Norbu; Choe Norbu; Nathaniel Novod; Tenchoe Nyima; Peter Olandt; Barry O'Neill; Keith O'Neill; Sahal Osman; Lucien Oyono; Christopher Patti; Danielle Perrin; Pema Phunkhang; Fritz Pierre; Margaret Priest; Anthony Rachupka; Sujaa Raghuraman; Rayale Rameau; Verneda Ray; Christina Raymond; Filip Rege; Cecil Rise; Julie Rogers; Peter Rogov; Julie Sahalie; Sampath Settipalli; Theodore Sharpe; Terrance Shea; Mechele Sheehan; Ngawang Sherpa; Jianying Shi; Diana Shih; Jessie Sloan; Cherylyn Smith; Todd Sparrow; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Sabrina Stone; Sean Sykes; Pierre Tchuinga; Pema Tenzing; Senait Tesfaye; Dawa Thoulutsang; Yama Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Vijay Venkataraman; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Shuli Yang; Xiaoping Yang; Geneva Young; Qing Yu; Joanne Zainoun; Lisa Zembek; Andrew Zimmer; Eric S Lander
Journal:  Nature       Date:  2005-12-08       Impact factor: 49.962

3.  A canine chromosome 7 locus confers compulsive disorder susceptibility.

Authors:  N H Dodman; E K Karlsson; A Moon-Fanelli; M Galdzicka; M Perloski; L Shuster; K Lindblad-Toh; E I Ginns
Journal:  Mol Psychiatry       Date:  2010-01       Impact factor: 15.992

4.  Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication.

Authors:  Bridgett M Vonholdt; John P Pollinger; Kirk E Lohmueller; Eunjung Han; Heidi G Parker; Pascale Quignon; Jeremiah D Degenhardt; Adam R Boyko; Dent A Earl; Adam Auton; Andy Reynolds; Kasia Bryc; Abra Brisbin; James C Knowles; Dana S Mosher; Tyrone C Spady; Abdel Elkahloun; Eli Geffen; Malgorzata Pilot; Wlodzimierz Jedrzejewski; Claudia Greco; Ettore Randi; Danika Bannasch; Alan Wilton; Jeremy Shearman; Marco Musiani; Michelle Cargill; Paul G Jones; Zuwei Qian; Wei Huang; Zhao-Li Ding; Ya-Ping Zhang; Carlos D Bustamante; Elaine A Ostrander; John Novembre; Robert K Wayne
Journal:  Nature       Date:  2010-03-17       Impact factor: 49.962

5.  The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs.

Authors:  Barbara C Hoopes; Maud Rimbault; David Liebers; Elaine A Ostrander; Nathan B Sutter
Journal:  Mamm Genome       Date:  2012-08-18       Impact factor: 2.957

6.  Origins and evolution of a transmissible cancer.

Authors:  Clare A Rebbeck; Rachael Thomas; Matthew Breen; Armand M Leroi; Austin Burt
Journal:  Evolution       Date:  2009-04-30       Impact factor: 3.694

7.  A single IGF1 allele is a major determinant of small size in dogs.

Authors:  Nathan B Sutter; Carlos D Bustamante; Kevin Chase; Melissa M Gray; Keyan Zhao; Lan Zhu; Badri Padhukasahasram; Eric Karlins; Sean Davis; Paul G Jones; Pascale Quignon; Gary S Johnson; Heidi G Parker; Neale Fretwell; Dana S Mosher; Dennis F Lawler; Ebenezer Satyaraj; Magnus Nordborg; K Gordon Lark; Robert K Wayne; Elaine A Ostrander
Journal:  Science       Date:  2007-04-06       Impact factor: 47.728

Review 8.  Genes affecting coat colour and pattern in domestic dogs: a review.

Authors:  S M Schmutz; T G Berryere
Journal:  Anim Genet       Date:  2007-12       Impact factor: 3.169

9.  Copynumber: Efficient algorithms for single- and multi-track copy number segmentation.

Authors:  Gro Nilsen; Knut Liestøl; Peter Van Loo; Hans Kristian Moen Vollan; Marianne B Eide; Oscar M Rueda; Suet-Feung Chin; Roslin Russell; Lars O Baumbusch; Carlos Caldas; Anne-Lise Børresen-Dale; Ole Christian Lingjaerde
Journal:  BMC Genomics       Date:  2012-11-04       Impact factor: 3.969

10.  Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution.

Authors:  Gang Li; Brian W Davis; Terje Raudsepp; Alison J Pearks Wilkerson; Victor C Mason; Malcolm Ferguson-Smith; Patricia C O'Brien; Paul D Waters; William J Murphy
Journal:  Genome Res       Date:  2013-06-20       Impact factor: 9.043

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  53 in total

Review 1.  Demographic history, selection and functional diversity of the canine genome.

Authors:  Elaine A Ostrander; Robert K Wayne; Adam H Freedman; Brian W Davis
Journal:  Nat Rev Genet       Date:  2017-09-25       Impact factor: 53.242

Review 2.  Computational approaches for discovery of mutational signatures in cancer.

Authors:  Adrian Baez-Ortega; Kevin Gori
Journal:  Brief Bioinform       Date:  2019-01-18       Impact factor: 11.622

Review 3.  Transmissible Tumors: Breaking the Cancer Paradigm.

Authors:  Elaine A Ostrander; Brian W Davis; Gary K Ostrander
Journal:  Trends Genet       Date:  2015-12-11       Impact factor: 11.639

Review 4.  Infection and cancer in multicellular organisms.

Authors:  Paul W Ewald; Holly A Swain Ewald
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-07-19       Impact factor: 6.237

5.  The evolutionary history of dogs in the Americas.

Authors:  Máire Ní Leathlobhair; Angela R Perri; Evan K Irving-Pease; Kelsey E Witt; Anna Linderholm; James Haile; Ophelie Lebrasseur; Carly Ameen; Jeffrey Blick; Adam R Boyko; Selina Brace; Yahaira Nunes Cortes; Susan J Crockford; Alison Devault; Evangelos A Dimopoulos; Morley Eldridge; Jacob Enk; Shyam Gopalakrishnan; Kevin Gori; Vaughan Grimes; Eric Guiry; Anders J Hansen; Ardern Hulme-Beaman; John Johnson; Andrew Kitchen; Aleksei K Kasparov; Young-Mi Kwon; Pavel A Nikolskiy; Carlos Peraza Lope; Aurélie Manin; Terrance Martin; Michael Meyer; Kelsey Noack Myers; Mark Omura; Jean-Marie Rouillard; Elena Y Pavlova; Paul Sciulli; Mikkel-Holger S Sinding; Andrea Strakova; Varvara V Ivanova; Christopher Widga; Eske Willerslev; Vladimir V Pitulko; Ian Barnes; M Thomas P Gilbert; Keith M Dobney; Ripan S Malhi; Elizabeth P Murchison; Greger Larson; Laurent A F Frantz
Journal:  Science       Date:  2018-07-06       Impact factor: 47.728

6.  Composite Agency: Semiotics of Modularity and Guiding Interactions.

Authors:  Alexei A Sharov
Journal:  Biosemiotics       Date:  2017-07-27       Impact factor: 0.711

7.  Cancer genetics: the origin and evolution of an ancient cancer.

Authors:  Isabel Lokody
Journal:  Nat Rev Cancer       Date:  2014-02-13       Impact factor: 60.716

8.  Somatic evolution and global expansion of an ancient transmissible cancer lineage.

Authors:  Kevin Gori; Andrea Strakova; Adrian Baez-Ortega; Janice L Allen; Karen M Allum; Leontine Bansse-Issa; Thinlay N Bhutia; Jocelyn L Bisson; Cristóbal Briceño; Artemio Castillo Domracheva; Anne M Corrigan; Hugh R Cran; Jane T Crawford; Eric Davis; Karina F de Castro; Andrigo B de Nardi; Anna P de Vos; Laura Delgadillo Keenan; Edward M Donelan; Adela R Espinoza Huerta; Ibikunle A Faramade; Mohammed Fazil; Eleni Fotopoulou; Skye N Fruean; Fanny Gallardo-Arrieta; Olga Glebova; Pagona G Gouletsou; Rodrigo F Häfelin Manrique; Joaquim J G P Henriques; Rodrigo S Horta; Natalia Ignatenko; Yaghouba Kane; Cathy King; Debbie Koenig; Ada Krupa; Steven J Kruzeniski; Young-Mi Kwon; Marta Lanza-Perea; Mihran Lazyan; Adriana M Lopez Quintana; Thibault Losfelt; Gabriele Marino; Simón Martínez Castañeda; Mayra F Martínez-López; Michael Meyer; Edward J Migneco; Berna Nakanwagi; Karter B Neal; Winifred Neunzig; Máire Ní Leathlobhair; Sally J Nixon; Antonio Ortega-Pacheco; Francisco Pedraza-Ordoñez; Maria C Peleteiro; Katherine Polak; Ruth J Pye; John F Reece; Jose Rojas Gutierrez; Haleema Sadia; Sheila K Schmeling; Olga Shamanova; Alan G Sherlock; Maximilian Stammnitz; Audrey E Steenland-Smit; Alla Svitich; Lester J Tapia Martínez; Ismail Thoya Ngoka; Cristian G Torres; Elizabeth M Tudor; Mirjam G van der Wel; Bogdan A Viţălaru; Sevil A Vural; Oliver Walkinton; Jinhong Wang; Alvaro S Wehrle-Martinez; Sophie A E Widdowson; Michael R Stratton; Ludmil B Alexandrov; Iñigo Martincorena; Elizabeth P Murchison
Journal:  Science       Date:  2019-08-02       Impact factor: 47.728

9.  Transmissible cancer in Tasmanian devils: localized lineage replacement and host population response.

Authors:  Rodrigo K Hamede; Anne-Maree Pearse; Kate Swift; Leon A Barmuta; Elizabeth P Murchison; Menna E Jones
Journal:  Proc Biol Sci       Date:  2015-09-07       Impact factor: 5.349

10.  Cancer genetics: The origin and evolution of an ancient cancer.

Authors:  Isabel Lokody
Journal:  Nat Rev Genet       Date:  2014-02-11       Impact factor: 53.242

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