Literature DB >> 24457504

Automatic alignment of genus-zero surfaces.

Patrice Koehl1, Joel Hass1.   

Abstract

A new algorithm is presented that provides a constructive way to conformally warp a triangular mesh of genus zero to a destination surface with minimal metric deformation, as well as a means to compute automatically a measure of the geometric difference between two surfaces of genus zero. The algorithm takes as input a pair of surfaces that are topological 2-spheres, each surface given by a distinct triangulation. The algorithm then constructs a map $(f)$ between the two surfaces. First, each of the two triangular meshes is mapped to the unit sphere using a discrete conformal mapping algorithm. The two mappings are then composed with a Möbius transformation to generate the function $(f)$. The Möbius transformation is chosen by minimizing an energy that measures the distance of $(f)$ from an isometry. We illustrate our approach using several "real life" data sets. We show first that the algorithm allows for accurate, automatic, and landmark-free nonrigid registration of brain surfaces. We then validate our approach by comparing shapes of proteins. We provide numerical experiments to demonstrate that the distances computed with our algorithm between low-resolution, surface-based representations of proteins are highly correlated with the corresponding distances computed between high-resolution, atomistic models for the same proteins.

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Year:  2014        PMID: 24457504     DOI: 10.1109/TPAMI.2013.139

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  6 in total

1.  Landmark-free geometric methods in biological shape analysis.

Authors:  Patrice Koehl; Joel Hass
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

2.  Minimum action principle and shape dynamics.

Authors:  Patrice Koehl
Journal:  J R Soc Interface       Date:  2017-05       Impact factor: 4.118

3.  Linear variational principle for Riemann mappings and discrete conformality.

Authors:  Nadav Dym; Raz Slutsky; Yaron Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-28       Impact factor: 11.205

4.  A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data.

Authors:  Wen Zhang; Liang Mi; Paul M Thompson; Yalin Wang
Journal:  Inf Process Med Imaging       Date:  2019-05-22

5.  Optimal mass transport for shape matching and comparison.

Authors:  Zhengyu Su; Yalin Wang; Rui Shi; Wei Zeng; Jian Sun; Feng Luo; Xianfeng Gu
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-11       Impact factor: 6.226

6.  How round is a protein? Exploring protein structures for globularity using conformal mapping.

Authors:  Joel Hass; Patrice Koehl
Journal:  Front Mol Biosci       Date:  2014-12-09
  6 in total

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