Literature DB >> 24454251

5-[(tert-Butyl-diphenyl-sil-yloxy)meth-yl]pyridazin-3(2H)-one.

María Carmen Costas-Lago1, Tamara Costas1, Noemí Vila1, Carmen Terán1.   

Abstract

In the title compound, C21H24N2O2Si, a new pyridazin-3(2H)-one derivative, the carbonyl group of the heterocyclic ring and the O atom of the silyl ether are located on the same side of the pyridazinone ring and the C-C-O-Si torsion angle is -140.69 (17)°. In the crystal, mol-ecules are linked by pairs of strong N-H⋯O hydrogen bonds into centrosymmetric dimers with graph-set notation R 2 (2)(8). Weak C-H⋯π inter-actions are also observed.

Entities:  

Year:  2013        PMID: 24454251      PMCID: PMC3885075          DOI: 10.1107/S160053681303167X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to related compounds displaying biological activity, see: Siddiqui et al. (2010 ▶); Moos et al. (1987 ▶); Coelho et al. (2007 ▶); Abouzid & Bekhit (2008 ▶); Cesari et al. (2006 ▶); Rathish et al. (2009 ▶); Sivakumar et al. (2003 ▶); Al-Tel (2010 ▶); Suree et al. (2009 ▶); Tao et al. (2011 ▶); Weishaar et al. (1985 ▶). For related structures, see: Costas et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H24N2O2Si M = 364.51 Monoclinic, a = 7.9844 (10) Å b = 14.1416 (17) Å c = 18.553 (2) Å β = 98.158 (2)° V = 2073.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.49 × 0.47 × 0.35 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.704, T max = 0.746 25441 measured reflections 5012 independent reflections 3090 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.172 S = 1.01 5012 reflections 242 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S160053681303167X/bx2453sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681303167X/bx2453Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681303167X/bx2453Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24N2O2SiF(000) = 776
Mr = 364.51Dx = 1.168 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.9844 (10) ÅCell parameters from 6082 reflections
b = 14.1416 (17) Åθ = 2.2–25.6°
c = 18.553 (2) ŵ = 0.13 mm1
β = 98.158 (2)°T = 293 K
V = 2073.6 (4) Å3Prism, colourless
Z = 40.49 × 0.47 × 0.35 mm
Bruker SMART 1000 CCD diffractometer5012 independent reflections
Radiation source: fine-focus sealed tube3090 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 28.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.704, Tmax = 0.746k = −18→18
25441 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.172H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0697P)2 + 1.0269P] where P = (Fo2 + 2Fc2)/3
5012 reflections(Δ/σ)max < 0.001
242 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. 1H-RMN (400 MHz, CDCl3) δ p.p.m.: 12.91 (s, 1H), 7.72 (d, 1H, J=1.9 Hz), 7.67 (m, 4H), 7.44 (m, 6H), 7.08 (m, 1H), 4.61 (d, 2H, J=1.3 Hz), 1.12 (s, 9H).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si−0.01100 (7)0.06816 (5)0.31744 (3)0.0514 (2)
N10.1582 (3)−0.09069 (15)0.02092 (11)0.0662 (5)
N20.2996 (3)−0.03706 (14)0.02689 (11)0.0575 (5)
H20.358 (3)−0.0458 (19)−0.0097 (15)0.073 (8)*
C40.2380 (3)0.04087 (17)0.13229 (11)0.0544 (5)
H40.26320.08520.16930.065*
C30.3532 (3)0.02690 (17)0.08010 (11)0.0545 (5)
O30.4903 (2)0.06809 (14)0.08028 (9)0.0743 (5)
C50.0949 (3)−0.00962 (16)0.12787 (11)0.0523 (5)
C60.0614 (3)−0.07715 (17)0.07036 (13)0.0616 (6)
H6−0.0361−0.11370.06830.074*
C1'−0.0338 (3)0.0012 (2)0.17870 (12)0.0650 (6)
H1'1−0.14250.01690.15100.078*
H1'2−0.0458−0.05840.20340.078*
O1'0.0132 (2)0.07213 (11)0.23069 (8)0.0597 (4)
C2'0.0633 (4)−0.05142 (19)0.35288 (13)0.0709 (7)
C3'−0.0335 (6)−0.1239 (3)0.37389 (18)0.1092 (12)
H3'−0.1494−0.11510.37240.131*
C4'0.0403 (9)−0.2126 (3)0.3980 (2)0.1304 (18)
H4'−0.0254−0.26120.41290.156*
C5'0.2058 (10)−0.2236 (3)0.3983 (2)0.145 (2)
H5'0.2548−0.28110.41380.174*
C6'0.3032 (8)−0.1568 (4)0.3776 (3)0.165 (2)
H6'0.4180−0.16760.37750.198*
C7'0.2323 (5)−0.0705 (3)0.3562 (3)0.1212 (14)
H7'0.3028−0.02290.34340.145*
C8'0.1407 (3)0.15851 (17)0.35988 (14)0.0613 (6)
C9'0.2043 (4)0.22855 (19)0.3190 (2)0.0853 (9)
H9'0.17070.23050.26890.102*
C10'0.3164 (5)0.2953 (3)0.3512 (4)0.1315 (19)
H10'0.35860.34120.32270.158*
C11'0.3645 (5)0.2945 (4)0.4228 (4)0.156 (3)
H11'0.43990.34010.44390.187*
C12'0.3054 (5)0.2284 (4)0.4651 (3)0.1347 (18)
H12'0.33930.22890.51510.162*
C13'0.1941 (4)0.1597 (3)0.43397 (17)0.0907 (9)
H13'0.15480.11380.46340.109*
C14'−0.2325 (3)0.1025 (3)0.32926 (15)0.0812 (9)
C15'−0.2574 (5)0.2050 (4)0.3026 (2)0.1399 (18)
H15A−0.37080.22490.30630.210*
H15B−0.23820.20890.25270.210*
H15C−0.17870.24540.33200.210*
C16'−0.2605 (5)0.0971 (4)0.40913 (18)0.1222 (15)
H16A−0.37180.11970.41370.183*
H16B−0.17770.13550.43830.183*
H16C−0.24940.03270.42550.183*
C17'−0.3641 (4)0.0404 (4)0.2832 (2)0.1413 (19)
H17A−0.3467−0.02450.29740.212*
H17B−0.35240.04720.23270.212*
H17C−0.47570.05970.29070.212*
U11U22U33U12U13U23
Si0.0496 (3)0.0634 (4)0.0439 (3)−0.0037 (3)0.0161 (2)0.0005 (3)
N10.0711 (13)0.0649 (13)0.0656 (12)0.0004 (10)0.0206 (10)−0.0141 (10)
N20.0594 (11)0.0651 (12)0.0513 (10)0.0080 (9)0.0197 (9)−0.0085 (9)
C40.0579 (13)0.0641 (14)0.0436 (11)0.0038 (10)0.0150 (9)−0.0058 (10)
C30.0551 (13)0.0638 (14)0.0470 (11)0.0066 (11)0.0154 (9)−0.0025 (10)
O30.0665 (11)0.0986 (14)0.0636 (10)−0.0144 (10)0.0295 (8)−0.0208 (9)
C50.0554 (12)0.0599 (13)0.0437 (11)0.0069 (10)0.0138 (9)0.0040 (9)
C60.0643 (14)0.0616 (14)0.0613 (14)−0.0034 (11)0.0173 (11)−0.0043 (11)
C1'0.0585 (13)0.0889 (18)0.0508 (12)−0.0025 (12)0.0192 (10)−0.0059 (12)
O1'0.0700 (10)0.0678 (10)0.0463 (8)0.0021 (8)0.0256 (7)0.0008 (7)
C2'0.100 (2)0.0637 (15)0.0507 (13)−0.0123 (14)0.0163 (13)0.0017 (11)
C3'0.158 (3)0.084 (2)0.089 (2)−0.042 (2)0.026 (2)0.0057 (18)
C4'0.236 (6)0.075 (3)0.086 (2)−0.041 (3)0.041 (3)0.0092 (19)
C5'0.257 (7)0.086 (3)0.098 (3)0.015 (4)0.048 (4)0.023 (2)
C6'0.170 (5)0.123 (4)0.210 (6)0.064 (4)0.057 (4)0.072 (4)
C7'0.110 (3)0.086 (2)0.173 (4)0.028 (2)0.037 (3)0.051 (2)
C8'0.0532 (12)0.0578 (14)0.0755 (16)0.0026 (11)0.0181 (11)−0.0091 (12)
C9'0.0749 (18)0.0550 (15)0.135 (3)0.0015 (13)0.0461 (18)−0.0044 (16)
C10'0.098 (3)0.062 (2)0.253 (6)−0.0135 (19)0.087 (4)−0.037 (3)
C11'0.074 (3)0.129 (4)0.273 (8)−0.034 (2)0.056 (4)−0.111 (5)
C12'0.085 (3)0.169 (4)0.144 (4)−0.006 (3)−0.006 (2)−0.085 (3)
C13'0.0783 (19)0.108 (2)0.083 (2)−0.0066 (17)0.0006 (15)−0.0245 (18)
C14'0.0536 (14)0.131 (3)0.0633 (15)0.0030 (16)0.0236 (12)−0.0113 (17)
C15'0.096 (3)0.180 (5)0.152 (4)0.074 (3)0.042 (2)0.021 (3)
C16'0.092 (2)0.209 (4)0.075 (2)−0.002 (3)0.0472 (18)−0.029 (2)
C17'0.0533 (17)0.266 (6)0.107 (3)−0.023 (3)0.0197 (17)−0.057 (3)
Si—O1'1.6490 (15)C6'—C7'1.380 (5)
Si—C8'1.857 (3)C6'—H6'0.9300
Si—C14'1.877 (3)C7'—H7'0.9300
Si—C2'1.880 (3)C8'—C13'1.380 (4)
N1—C61.295 (3)C8'—C9'1.387 (4)
N1—N21.351 (3)C9'—C10'1.378 (5)
N2—C31.362 (3)C9'—H9'0.9300
N2—H20.89 (3)C10'—C11'1.329 (8)
C4—C51.340 (3)C10'—H10'0.9300
C4—C31.440 (3)C11'—C12'1.348 (8)
C4—H40.9300C11'—H11'0.9300
C3—O31.240 (3)C12'—C13'1.386 (5)
C5—C61.429 (3)C12'—H12'0.9300
C5—C1'1.498 (3)C13'—H13'0.9300
C6—H60.9300C14'—C16'1.531 (4)
C1'—O1'1.406 (3)C14'—C17'1.533 (5)
C1'—H1'10.9700C14'—C15'1.535 (5)
C1'—H1'20.9700C15'—H15A0.9600
C2'—C7'1.369 (5)C15'—H15B0.9600
C2'—C3'1.373 (4)C15'—H15C0.9600
C3'—C4'1.431 (6)C16'—H16A0.9600
C3'—H3'0.9300C16'—H16B0.9600
C4'—C5'1.329 (7)C16'—H16C0.9600
C4'—H4'0.9300C17'—H17A0.9600
C5'—C6'1.315 (7)C17'—H17B0.9600
C5'—H5'0.9300C17'—H17C0.9600
O1'—Si—C8'103.33 (10)C2'—C7'—H7'118.4
O1'—Si—C14'110.38 (11)C6'—C7'—H7'118.4
C8'—Si—C14'109.94 (13)C13'—C8'—C9'116.8 (3)
O1'—Si—C2'107.29 (10)C13'—C8'—Si121.4 (2)
C8'—Si—C2'108.43 (12)C9'—C8'—Si121.8 (2)
C14'—Si—C2'116.61 (15)C10'—C9'—C8'121.1 (4)
C6—N1—N2115.8 (2)C10'—C9'—H9'119.4
N1—N2—C3127.22 (19)C8'—C9'—H9'119.4
N1—N2—H2112.7 (17)C11'—C10'—C9'120.4 (5)
C3—N2—H2120.1 (17)C11'—C10'—H10'119.8
C5—C4—C3120.4 (2)C9'—C10'—H10'119.8
C5—C4—H4119.8C10'—C11'—C12'120.8 (4)
C3—C4—H4119.8C10'—C11'—H11'119.6
O3—C3—N2120.03 (19)C12'—C11'—H11'119.6
O3—C3—C4125.6 (2)C11'—C12'—C13'120.1 (5)
N2—C3—C4114.4 (2)C11'—C12'—H12'120.0
C4—C5—C6118.0 (2)C13'—C12'—H12'120.0
C4—C5—C1'124.2 (2)C8'—C13'—C12'120.8 (4)
C6—C5—C1'117.7 (2)C8'—C13'—H13'119.6
N1—C6—C5124.1 (2)C12'—C13'—H13'119.6
N1—C6—H6118.0C16'—C14'—C17'109.2 (3)
C5—C6—H6118.0C16'—C14'—C15'109.2 (3)
O1'—C1'—C5111.4 (2)C17'—C14'—C15'108.3 (3)
O1'—C1'—H1'1109.4C16'—C14'—Si111.7 (2)
C5—C1'—H1'1109.4C17'—C14'—Si111.7 (2)
O1'—C1'—H1'2109.4C15'—C14'—Si106.7 (2)
C5—C1'—H1'2109.4C14'—C15'—H15A109.5
H1'1—C1'—H1'2108.0C14'—C15'—H15B109.5
C1'—O1'—Si126.05 (15)H15A—C15'—H15B109.5
C7'—C2'—C3'115.6 (3)C14'—C15'—H15C109.5
C7'—C2'—Si116.9 (2)H15A—C15'—H15C109.5
C3'—C2'—Si127.5 (3)H15B—C15'—H15C109.5
C2'—C3'—C4'121.3 (4)C14'—C16'—H16A109.5
C2'—C3'—H3'119.3C14'—C16'—H16B109.5
C4'—C3'—H3'119.3H16A—C16'—H16B109.5
C5'—C4'—C3'118.0 (4)C14'—C16'—H16C109.5
C5'—C4'—H4'121.0H16A—C16'—H16C109.5
C3'—C4'—H4'121.0H16B—C16'—H16C109.5
C6'—C5'—C4'122.9 (5)C14'—C17'—H17A109.5
C6'—C5'—H5'118.6C14'—C17'—H17B109.5
C4'—C5'—H5'118.6H17A—C17'—H17B109.5
C5'—C6'—C7'119.0 (5)C14'—C17'—H17C109.5
C5'—C6'—H6'120.5H17A—C17'—H17C109.5
C7'—C6'—H6'120.5H17B—C17'—H17C109.5
C2'—C7'—C6'123.3 (4)
C6—N1—N2—C32.2 (4)C3'—C2'—C7'—C6'1.3 (6)
N1—N2—C3—O3176.7 (2)Si—C2'—C7'—C6'−176.7 (4)
N1—N2—C3—C4−3.9 (3)C5'—C6'—C7'—C2'−2.3 (9)
C5—C4—C3—O3−178.2 (2)O1'—Si—C8'—C13'−161.8 (2)
C5—C4—C3—N22.5 (3)C14'—Si—C8'—C13'80.3 (2)
C3—C4—C5—C60.2 (3)C2'—Si—C8'—C13'−48.2 (2)
C3—C4—C5—C1'−178.8 (2)O1'—Si—C8'—C9'18.9 (2)
N2—N1—C6—C51.0 (4)C14'—Si—C8'—C9'−98.9 (2)
C4—C5—C6—N1−2.1 (4)C2'—Si—C8'—C9'132.6 (2)
C1'—C5—C6—N1177.0 (2)C13'—C8'—C9'—C10'0.5 (4)
C4—C5—C1'—O1'1.1 (3)Si—C8'—C9'—C10'179.8 (2)
C6—C5—C1'—O1'−177.9 (2)C8'—C9'—C10'—C11'−0.8 (5)
C5—C1'—O1'—Si−140.69 (17)C9'—C10'—C11'—C12'0.2 (7)
C8'—Si—O1'—C1'160.37 (19)C10'—C11'—C12'—C13'0.5 (7)
C14'—Si—O1'—C1'−82.1 (2)C9'—C8'—C13'—C12'0.3 (4)
C2'—Si—O1'—C1'45.9 (2)Si—C8'—C13'—C12'−179.0 (3)
O1'—Si—C2'—C7'66.8 (3)C11'—C12'—C13'—C8'−0.8 (6)
C8'—Si—C2'—C7'−44.2 (3)O1'—Si—C14'—C16'178.5 (3)
C14'—Si—C2'—C7'−168.9 (3)C8'—Si—C14'—C16'−68.1 (3)
O1'—Si—C2'—C3'−110.9 (3)C2'—Si—C14'—C16'55.8 (3)
C8'—Si—C2'—C3'138.1 (3)O1'—Si—C14'—C17'56.0 (3)
C14'—Si—C2'—C3'13.4 (3)C8'—Si—C14'—C17'169.4 (3)
C7'—C2'—C3'—C4'0.4 (5)C2'—Si—C14'—C17'−66.7 (3)
Si—C2'—C3'—C4'178.2 (3)O1'—Si—C14'—C15'−62.1 (3)
C2'—C3'—C4'—C5'−1.1 (6)C8'—Si—C14'—C15'51.2 (3)
C3'—C4'—C5'—C6'0.1 (8)C2'—Si—C14'—C15'175.1 (2)
C4'—C5'—C6'—C7'1.6 (9)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.89 (3)1.93 (3)2.812 (2)173 (2)
C6—H6···Cg3ii0.933.003.869 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C8′–C13′ ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O3i 0.89 (3)1.93 (3)2.812 (2)173 (2)
C6—H6⋯Cg3ii 0.933.003.869 (3)157

Symmetry codes: (i) ; (ii) .

  13 in total

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1.  4-[(tert-Butyl-diphenyl-sil-yloxy)meth-yl]pyridazin-3(2H)-one.

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