Literature DB >> 24454178

Poly[di-μ9-citrato-tetra-sodiumzinc].

Yu-Hong Ma1, Hong-Wei Yang1, Jing-Tuan Hao1, Pi-Zhuang Ma2, Ting Yao1.   

Abstract

In the title compound, [Na4Zn(C6H5O7)2] n , the Zn(II) ion lies on an inversion center and is coordinated by six O atoms from two citrate ligands, forming a distorted octa-hedral geometry. There are two crystallographically independent Na(+) cations in the asymmetric unit. One Na(+) cation exhibits a distorted square-pyramidal geometry defined by five O atoms from four citrate ligands. The other Na(+) cation is surrounded by six O atoms from five citrate ligands in a distorted octa-hedral geometry. The Na(+) cations are bridged by citrate carboxyl-ate groups, forming a layer parallel to (100). The layers are further assembled into a three-dimensional network with the [Zn(citrate)2](4-) building units as 'pillars'; O-H⋯O hydrogen bonds also stabilize the structure.

Entities:  

Year:  2013        PMID: 24454178      PMCID: PMC3885003          DOI: 10.1107/S1600536813030067

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For an isotypic compound, see: Liu et al. (2012 ▶).

Experimental

Crystal data

[Na4Zn(C6H5O7)2] M = 535.55 Monoclinic, a = 7.9642 (16) Å b = 12.530 (3) Å c = 8.7090 (17) Å β = 113.66 (3)° V = 796.0 (3) Å3 Z = 2 Mo Kα radiation μ = 1.74 mm−1 T = 293 K 0.21 × 0.21 × 0.20 mm

Data collection

Rigaku SCXmini CCD diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.712, T max = 0.722 8270 measured reflections 1831 independent reflections 1570 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.075 S = 1.15 1831 reflections 145 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.47 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813030067/hy2639sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030067/hy2639Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na4Zn(C6H5O7)2]F(000) = 536
Mr = 535.55Dx = 2.234 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7740 reflections
a = 7.9642 (16) Åθ = 3.0–27.5°
b = 12.530 (3) ŵ = 1.74 mm1
c = 8.7090 (17) ÅT = 293 K
β = 113.66 (3)°Block, colorless
V = 796.0 (3) Å30.21 × 0.21 × 0.20 mm
Z = 2
Rigaku SCXmini CCD diffractometer1831 independent reflections
Radiation source: fine-focus sealed tube1570 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
ω scanθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.712, Tmax = 0.722k = −16→16
8270 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0289P)2 + 0.3351P] where P = (Fo2 + 2Fc2)/3
1831 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O70.4930 (2)0.98761 (13)0.7363 (2)0.0127 (4)
O30.2766 (2)0.89905 (13)0.4482 (2)0.0178 (4)
O40.1751 (2)0.77628 (13)0.5749 (2)0.0175 (4)
O60.8225 (3)0.72885 (15)0.7149 (2)0.0233 (4)
O50.6783 (2)0.87114 (13)0.5716 (2)0.0175 (4)
C80.7041 (3)0.8007 (2)0.6829 (3)0.0141 (5)
C40.2806 (3)0.84956 (19)0.5774 (3)0.0124 (5)
C50.5911 (3)0.80021 (19)0.7885 (3)0.0132 (5)
H5A0.67480.81180.90420.016*
H5B0.54070.72910.78220.016*
C30.4328 (3)0.87982 (18)0.7479 (3)0.0118 (5)
C20.3615 (3)0.87711 (19)0.8861 (3)0.0144 (5)
H2A0.31800.80560.89200.017*
H2B0.46290.89160.99230.017*
O20.1969 (2)0.98895 (14)0.9984 (2)0.0179 (4)
Zn10.50001.00000.50000.01321 (12)
Na2−0.05408 (14)1.12137 (8)0.83937 (13)0.0216 (3)
Na10.10230 (14)1.11830 (8)0.53517 (13)0.0222 (3)
O10.1002 (2)0.98321 (13)0.7212 (2)0.0186 (4)
C10.2085 (3)0.95534 (19)0.8644 (3)0.0131 (5)
H10.606 (4)1.000 (2)0.828 (4)0.016*
U11U22U33U12U13U23
O70.0154 (9)0.0111 (9)0.0118 (9)−0.0021 (7)0.0057 (7)−0.0007 (7)
O30.0185 (9)0.0207 (10)0.0114 (9)−0.0038 (8)0.0030 (8)0.0027 (7)
O40.0173 (9)0.0160 (9)0.0210 (10)−0.0047 (7)0.0095 (8)−0.0030 (7)
O60.0225 (10)0.0256 (11)0.0245 (11)0.0128 (8)0.0123 (9)0.0071 (8)
O50.0223 (10)0.0168 (9)0.0180 (9)0.0037 (7)0.0127 (8)0.0041 (7)
C80.0123 (12)0.0156 (13)0.0137 (12)0.0008 (10)0.0045 (10)−0.0014 (10)
C40.0110 (12)0.0132 (12)0.0151 (12)0.0031 (9)0.0072 (10)−0.0014 (9)
C50.0145 (12)0.0127 (12)0.0131 (12)0.0023 (10)0.0065 (10)0.0017 (9)
C30.0136 (12)0.0104 (11)0.0123 (12)−0.0003 (9)0.0062 (10)0.0028 (9)
C20.0155 (12)0.0160 (13)0.0134 (13)0.0014 (10)0.0076 (11)0.0024 (10)
O20.0176 (9)0.0229 (10)0.0162 (9)0.0018 (8)0.0098 (8)−0.0047 (7)
Zn10.0152 (2)0.0130 (2)0.0124 (2)0.00022 (17)0.00663 (17)0.00209 (16)
Na20.0197 (5)0.0236 (6)0.0216 (6)0.0023 (4)0.0084 (5)−0.0013 (4)
Na10.0208 (6)0.0253 (6)0.0223 (6)−0.0022 (4)0.0105 (5)−0.0007 (4)
O10.0178 (9)0.0208 (10)0.0159 (9)0.0024 (7)0.0053 (8)0.0006 (7)
C10.0134 (12)0.0113 (11)0.0165 (13)−0.0039 (10)0.0080 (11)−0.0011 (10)
O7—C31.450 (3)O2—Na22.539 (2)
O7—Zn12.0866 (17)Zn1—O5iv2.0742 (17)
O3—C41.274 (3)Zn1—O3iv2.0796 (17)
O3—Zn12.0796 (17)Zn1—O7iv2.0866 (17)
O3—Na2i2.432 (2)Na2—O4v2.415 (2)
O4—C41.239 (3)Na2—O3i2.432 (2)
O4—Na2ii2.415 (2)Na2—O6vi2.478 (2)
O4—Na1i2.417 (2)Na2—O2vii2.548 (2)
O6—C81.251 (3)Na2—O12.565 (2)
O6—Na1iii2.443 (2)Na1—O5iv2.288 (2)
O6—Na2iii2.478 (2)Na1—O12.348 (2)
O5—C81.266 (3)Na1—O4i2.417 (2)
O5—Zn12.0742 (17)Na1—O6vi2.443 (2)
O5—Na1iv2.288 (2)Na1—O1i2.512 (2)
C8—C51.523 (3)Na1—C4i2.833 (3)
C8—Na1iv3.061 (3)Na1—C8iv3.061 (3)
C4—C31.540 (3)O1—C11.248 (3)
C4—Na1i2.833 (3)O7—H10.95 (3)
C5—C31.534 (3)C2—H2A0.97
C3—C21.523 (3)C2—H2B0.97
C2—C11.516 (3)C5—H5A0.97
O2—C11.279 (3)C5—H5B0.97
C3—O7—Zn1106.16 (13)Na1—Na2—Na1viii102.34 (4)
C4—O3—Zn1112.86 (16)O4v—Na2—Na2vii113.39 (6)
C4—O3—Na2i127.44 (16)O3i—Na2—Na2vii120.36 (6)
Zn1—O3—Na2i119.59 (8)O6vi—Na2—Na2vii125.52 (7)
C4—O4—Na2ii160.44 (17)O2—Na2—Na2vii38.48 (4)
C4—O4—Na1i96.18 (14)O2vii—Na2—Na2vii38.32 (4)
Na2ii—O4—Na1i98.47 (7)O1—Na2—Na2vii76.31 (5)
C8—O6—Na1iii119.97 (16)Na1—Na2—Na2vii120.15 (4)
C8—O6—Na2iii154.24 (17)Na1viii—Na2—Na2vii114.57 (5)
Na1iii—O6—Na2iii85.80 (7)O5iv—Na1—O1122.68 (8)
C8—O5—Zn1130.84 (16)O5iv—Na1—O4i122.16 (7)
C8—O5—Na1iv115.86 (16)O1—Na1—O4i114.15 (7)
Zn1—O5—Na1iv112.04 (8)O5iv—Na1—O6vi112.02 (8)
O6—C8—O5123.2 (2)O1—Na1—O6vi82.02 (7)
O6—C8—C5116.0 (2)O4i—Na1—O6vi84.37 (8)
O5—C8—C5120.8 (2)O5iv—Na1—O1i89.47 (7)
O4—C4—O3124.7 (2)O1—Na1—O1i93.91 (7)
O4—C4—C3117.7 (2)O4i—Na1—O1i76.45 (7)
O3—C4—C3117.6 (2)O6vi—Na1—O1i156.79 (8)
C8—C5—C3119.2 (2)O5iv—Na1—C4i137.95 (8)
O7—C3—C2108.32 (19)O1—Na1—C4i92.09 (8)
O7—C3—C5110.93 (19)O4i—Na1—C4i25.78 (6)
C2—C3—C5109.63 (19)O6vi—Na1—C4i94.17 (8)
O7—C3—C4108.45 (18)O1i—Na1—C4i63.03 (7)
C2—C3—C4110.9 (2)O5iv—Na1—C8iv21.85 (6)
C5—C3—C4108.56 (19)O1—Na1—C8iv144.32 (8)
C1—C2—C3115.0 (2)O4i—Na1—C8iv100.39 (7)
C1—O2—Na292.67 (15)O6vi—Na1—C8iv111.12 (7)
C1—O2—Na2vii122.64 (15)O1i—Na1—C8iv85.42 (7)
Na2—O2—Na2vii103.20 (7)C4i—Na1—C8iv118.60 (8)
O5iv—Zn1—O5180.0O5iv—Na1—Na1i112.02 (7)
O5iv—Zn1—O3iv90.85 (7)O1—Na1—Na1i49.04 (5)
O5—Zn1—O3iv89.15 (7)O4i—Na1—Na1i96.43 (6)
O5iv—Zn1—O389.15 (7)O6vi—Na1—Na1i126.69 (7)
O5—Zn1—O390.85 (7)O1i—Na1—Na1i44.88 (5)
O3iv—Zn1—O3180.000 (1)C4i—Na1—Na1i71.49 (6)
O5iv—Zn1—O7iv86.09 (7)C8iv—Na1—Na1i120.93 (7)
O5—Zn1—O7iv93.91 (7)O5iv—Na1—Na2155.15 (7)
O3iv—Zn1—O7iv79.02 (7)O1—Na1—Na249.81 (5)
O3—Zn1—O7iv100.98 (7)O4i—Na1—Na274.74 (5)
O5iv—Zn1—O793.91 (7)O6vi—Na1—Na247.54 (5)
O5—Zn1—O786.09 (7)O1i—Na1—Na2113.50 (6)
O3iv—Zn1—O7100.98 (7)C4i—Na1—Na265.27 (6)
O3—Zn1—O779.02 (7)C8iv—Na1—Na2157.96 (6)
O7iv—Zn1—O7180.000 (1)Na1i—Na1—Na281.11 (4)
O5iv—Zn1—Na135.88 (5)O5iv—Na1—Zn132.08 (5)
O5—Zn1—Na1144.12 (5)O1—Na1—Zn190.68 (6)
O3iv—Zn1—Na1115.73 (5)O4i—Na1—Zn1151.83 (6)
O3—Zn1—Na164.27 (5)O6vi—Na1—Zn1113.43 (6)
O7iv—Zn1—Na1115.05 (6)O1i—Na1—Zn189.37 (5)
O7—Zn1—Na164.95 (6)C4i—Na1—Zn1152.38 (6)
O5iv—Zn1—Na1iv144.12 (5)C8iv—Na1—Zn153.66 (5)
O5—Zn1—Na1iv35.88 (5)Na1i—Na1—Zn190.01 (4)
O3iv—Zn1—Na1iv64.27 (5)Na2—Na1—Zn1133.42 (4)
O3—Zn1—Na1iv115.73 (5)O5iv—Na1—Na2ix86.09 (5)
O7iv—Zn1—Na1iv64.95 (6)O1—Na1—Na2ix150.32 (6)
O7—Zn1—Na1iv115.05 (6)O4i—Na1—Na2ix40.74 (5)
Na1—Zn1—Na1iv180.0O6vi—Na1—Na2ix79.96 (6)
O4v—Na2—O3i100.76 (7)O1i—Na1—Na2ix93.45 (6)
O4v—Na2—O6vi92.41 (7)C4i—Na1—Na2ix66.06 (6)
O3i—Na2—O6vi98.70 (7)C8iv—Na1—Na2ix64.99 (5)
O4v—Na2—O2132.94 (7)Na1i—Na1—Na2ix131.30 (6)
O3i—Na2—O2125.58 (7)Na2—Na1—Na2ix101.14 (3)
O6vi—Na2—O288.62 (7)Zn1—Na1—Na2ix118.12 (3)
O4v—Na2—O2vii86.70 (7)C1—O1—Na1134.25 (16)
O3i—Na2—O2vii102.18 (7)C1—O1—Na1i133.31 (16)
O6vi—Na2—O2vii158.90 (8)Na1—O1—Na1i86.09 (7)
O2—Na2—O2vii76.80 (7)C1—O1—Na292.17 (15)
O4v—Na2—O1168.90 (7)Na1—O1—Na285.84 (6)
O3i—Na2—O177.54 (7)Na1i—O1—Na2117.27 (8)
O6vi—Na2—O177.12 (7)O1—C1—O2123.1 (2)
O2—Na2—O151.60 (6)O1—C1—C2120.3 (2)
O2vii—Na2—O1104.40 (7)O2—C1—C2116.6 (2)
O4v—Na2—Na1125.09 (6)Zn1—O7—H1115 (2)
O3i—Na2—Na162.16 (5)C3—O7—H1108.9 (16)
O6vi—Na2—Na146.67 (5)C1—C2—H2A109
O2—Na2—Na187.87 (5)C1—C2—H2B109
O2vii—Na2—Na1145.37 (6)C3—C2—H2A108
O1—Na2—Na144.35 (5)C3—C2—H2B109
O4v—Na2—Na1viii40.79 (5)H2A—C2—H2B108
O3i—Na2—Na1viii123.00 (6)C3—C5—H5A107
O6vi—Na2—Na1viii57.61 (5)C3—C5—H5B108
O2—Na2—Na1viii106.39 (6)C8—C5—H5A107
O2vii—Na2—Na1viii111.68 (5)C8—C5—H5B108
O1—Na2—Na1viii131.31 (6)H5A—C5—H5B107
D—H···AD—HH···AD···AD—H···A
O7—H1···O2x0.95 (3)1.69 (3)2.635 (2)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O7—H1⋯O2i 0.95 (3)1.69 (3)2.635 (2)174 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[di-μ(9)-citrato-cobalt(II)tetra-sodium].

Authors:  Zhen Liu; Ruijing Tian; Rui Mao; Xueyin Cao; Fuxiang Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25
  2 in total
  1 in total

1.  Evaluation of Insulin-Like Activity of Novel Zinc Metal-Organics toward Adipogenesis Signaling.

Authors:  Catherine Gabriel; Olga Tsave; Maria P Yavropoulou; Theodore Architektonidis; Catherine P Raptopoulou; Vassilis Psycharis; Athanasios Salifoglou
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.