Literature DB >> 22590162

Poly[di-μ(9)-citrato-cobalt(II)tetra-sodium].

Zhen Liu1, Ruijing Tian, Rui Mao, Xueyin Cao, Fuxiang Wang.   

Abstract

The title compound, [CoNa(4)(C(6)H(5)O(7))(2)](n), was obtained under hydro-thermal conditions as a minor product. The Co(2+) cation is located on a crystallographic inversion center and is coordinated by six O atoms from two different citrate units, forming a [Co(C(6)H(5)O(7))(2)](4-) building unit with Co-O bond lengths between 2.0578 (17) and 2.0813 (16) Å. The structure features two crystallographically independent Na(+) ions. The first Na(+) cation is five-coordinated by O atoms of five carboxylate groups from four different citrate anions. The second Na(+) cation is surrounded by six O atoms of five carboxylate groups from five different citrate anions. The carboxylate groups of the citrate are completely depronona-ted, the hydroxyl group, however, is not. It is coordinated to the Co(2+) cation, and through an O-H⋯O hydrogen bond connected to a neighboring [Co(C(6)H(5)O(7))(2)](4-) building unit. The coordination modes of the carboxyl-ate O atoms vary, with one O atom being coordinated to three different Na(+) cations, three are bridging O atoms bound to two Na(+) cations and two are connected to a Co(2+) cation and a Na(+) cation, respectively. Through these inter-connections, the basic [Co(C(6)H(5)O(7))(2)](4-) building units are linked with each other through coordination of their carboxyl-ate groups to the Na(+) cations, forming a three-dimensional framework.

Entities:  

Year:  2012        PMID: 22590162      PMCID: PMC3344400          DOI: 10.1107/S1600536812017606

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of coordination polymers in drug delivery, shape-selective sorption/separation and catalysis, see: Chen & Tong (2007 ▶); Zeng et al. (2009 ▶). Their structures vary from one-dimensional to three-dimensional architectures, see: Du & Bu et al. (2009 ▶); Qiu & Zhu (2009 ▶). For a compound containing the [Co(C6H5O7)2]4− subunit, see: Matzapetakis et al. (2000 ▶); for coordination polymers involving Na+ cations, see: Pan et al. (2011 ▶).

Experimental

Crystal data

[CoNa4(C6H5O7)2] M = 529.09 Monoclinic, a = 7.9792 (16) Å b = 12.516 (3) Å c = 8.7110 (17) Å β = 113.84 (3)° V = 795.7 (3) Å3 Z = 2 Mo Kα radiation μ = 1.28 mm−1 T = 293 K 0.25 × 0.15 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002 ▶) T min = 0.795, T max = 0.826 8179 measured reflections 1820 independent reflections 1493 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.072 S = 1.12 1820 reflections 142 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.31 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812017606/zl2468sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017606/zl2468Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoNa4(C6H5O7)2]F(000) = 530
Mr = 529.09Dx = 2.208 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7365 reflections
a = 7.9792 (16) Åθ = 3.0–27.5°
b = 12.516 (3) ŵ = 1.28 mm1
c = 8.7110 (17) ÅT = 293 K
β = 113.84 (3)°Block, yellow
V = 795.7 (3) Å30.25 × 0.15 × 0.15 mm
Z = 2
Rigaku R-AXIS RAPID-S diffractometer1820 independent reflections
Radiation source: fine-focus sealed tube1493 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002)h = −10→10
Tmin = 0.795, Tmax = 0.826k = −15→16
8179 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.072H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0253P)2 + 0.3552P] where P = (Fo2 + 2Fc2)/3
1820 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.00000.00001.00000.01112 (13)
Na10.60461 (14)0.11777 (8)1.03513 (13)0.0233 (3)
Na20.44536 (14)0.37904 (8)0.83883 (13)0.0219 (3)
O11.0085 (2)0.01241 (12)0.7650 (2)0.0125 (4)
H10.90890.00010.68070.015*
O20.8226 (2)0.12772 (13)0.9279 (2)0.0177 (4)
O30.6796 (2)0.27068 (15)0.7861 (2)0.0232 (5)
O41.3026 (2)0.01125 (14)0.5009 (2)0.0195 (4)
O51.4004 (2)0.01690 (13)0.7789 (2)0.0186 (4)
O61.2231 (2)0.10114 (14)1.0518 (2)0.0172 (4)
O71.3273 (2)0.22348 (13)0.9263 (2)0.0187 (4)
C11.0686 (3)0.12024 (19)0.7524 (3)0.0120 (5)
C20.9109 (3)0.19974 (19)0.7122 (3)0.0138 (5)
H2A0.96160.27090.71930.017*
H2B0.82740.18860.59610.017*
C30.7974 (3)0.1990 (2)0.8171 (3)0.0143 (5)
C41.1394 (3)0.12288 (19)0.6139 (3)0.0144 (5)
H4A1.03770.10870.50750.017*
H4B1.18330.19440.60820.017*
C51.2912 (3)0.0446 (2)0.6347 (3)0.0142 (5)
C61.2209 (3)0.1507 (2)0.9229 (3)0.0132 (5)
U11U22U33U12U13U23
Co10.0127 (2)0.0116 (2)0.0100 (2)0.0002 (2)0.00553 (18)0.0019 (2)
Na10.0213 (6)0.0273 (6)0.0241 (6)−0.0021 (5)0.0121 (5)−0.0007 (5)
Na20.0197 (5)0.0251 (6)0.0217 (6)−0.0023 (5)0.0092 (5)0.0015 (5)
O10.0139 (8)0.0118 (9)0.0109 (8)−0.0036 (7)0.0041 (7)−0.0007 (7)
O20.0205 (10)0.0181 (10)0.0184 (10)0.0034 (8)0.0121 (8)0.0051 (8)
O30.0212 (11)0.0269 (11)0.0246 (11)0.0126 (8)0.0126 (9)0.0074 (9)
O40.0186 (10)0.0256 (10)0.0163 (9)0.0018 (8)0.0092 (8)−0.0050 (8)
O50.0190 (9)0.0187 (10)0.0152 (9)0.0030 (8)0.0039 (8)0.0003 (8)
O60.0176 (9)0.0199 (10)0.0113 (9)−0.0018 (8)0.0028 (7)0.0032 (8)
O70.0179 (10)0.0176 (9)0.0219 (10)−0.0051 (8)0.0096 (8)−0.0022 (8)
C10.0144 (12)0.0112 (12)0.0118 (12)0.0005 (10)0.0069 (10)0.0026 (10)
C20.0167 (13)0.0145 (12)0.0111 (12)0.0030 (10)0.0066 (10)0.0015 (11)
C30.0137 (13)0.0150 (13)0.0128 (13)0.0000 (10)0.0038 (10)−0.0023 (11)
C40.0167 (13)0.0151 (13)0.0125 (13)0.0032 (10)0.0072 (11)0.0015 (11)
C50.0139 (13)0.0135 (12)0.0160 (14)−0.0039 (10)0.0068 (11)−0.0002 (11)
C60.0112 (12)0.0141 (12)0.0164 (13)0.0042 (10)0.0077 (11)−0.0021 (11)
Co1—O2i2.0578 (17)O4—C51.275 (3)
Co1—O22.0578 (17)O4—Na2viii2.542 (2)
Co1—O62.0800 (17)O4—Na2ix2.545 (2)
Co1—O6i2.0800 (17)O5—C51.254 (3)
Co1—O12.0813 (16)O5—Na1i2.349 (2)
Co1—O1i2.0813 (16)O5—Na1x2.508 (2)
Na1—O22.286 (2)O5—Na2viii2.562 (2)
Na1—O5i2.349 (2)O6—C61.276 (3)
Na1—O7ii2.418 (2)O6—Na2xi2.424 (2)
Na1—O3iii2.455 (2)O7—C61.238 (3)
Na1—O5ii2.508 (2)O7—Na2x2.416 (2)
Na2—O7ii2.416 (2)O7—Na1x2.418 (2)
Na2—O6iv2.424 (2)C1—C41.526 (3)
Na2—O32.498 (2)C1—C21.530 (3)
Na2—O4v2.542 (2)C1—C61.539 (3)
Na2—O4vi2.545 (2)C2—C31.525 (3)
Na2—O5v2.562 (2)C2—H2A0.9700
O1—C11.451 (3)C2—H2B0.9700
O1—H10.8501C4—C51.510 (3)
O2—C31.270 (3)C4—H4A0.9700
O3—C31.247 (3)C4—H4B0.9700
O3—Na1vii2.455 (2)
O2i—Co1—O2180.000 (1)C3—O3—Na1vii119.56 (16)
O2i—Co1—O689.06 (7)C3—O3—Na2154.82 (17)
O2—Co1—O690.94 (7)Na1vii—O3—Na285.63 (7)
O2i—Co1—O6i90.94 (7)C5—O4—Na2viii92.53 (15)
O2—Co1—O6i89.06 (7)C5—O4—Na2ix122.91 (16)
O6—Co1—O6i180.0Na2viii—O4—Na2ix102.91 (7)
O2i—Co1—O193.79 (7)C5—O5—Na1i133.69 (16)
O2—Co1—O186.21 (7)C5—O5—Na1x133.68 (16)
O6—Co1—O178.61 (7)Na1i—O5—Na1x86.18 (7)
O6i—Co1—O1101.39 (7)C5—O5—Na2viii92.13 (15)
O2i—Co1—O1i86.21 (7)Na1i—O5—Na2viii86.42 (6)
O2—Co1—O1i93.79 (7)Na1x—O5—Na2viii116.79 (8)
O6—Co1—O1i101.39 (7)C6—O6—Co1113.50 (16)
O6i—Co1—O1i78.61 (7)C6—O6—Na2xi127.01 (16)
O1—Co1—O1i180.000 (1)Co1—O6—Na2xi119.41 (8)
O2—Na1—O5i123.27 (8)C6—O7—Na2x159.49 (17)
O2—Na1—O7ii122.46 (7)C6—O7—Na1x96.72 (15)
O5i—Na1—O7ii113.26 (7)Na2x—O7—Na1x98.80 (7)
O2—Na1—O3iii112.38 (8)O1—C1—C4108.62 (19)
O5i—Na1—O3iii81.95 (7)O1—C1—C2110.85 (19)
O7ii—Na1—O3iii83.86 (7)C4—C1—C2109.76 (19)
O2—Na1—O5ii89.53 (7)O1—C1—C6108.27 (19)
O5i—Na1—O5ii93.82 (7)C4—C1—C6110.9 (2)
O7ii—Na1—O5ii76.36 (7)C2—C1—C6108.40 (19)
O3iii—Na1—O5ii156.27 (7)C3—C2—C1119.5 (2)
O7ii—Na2—O6iv101.07 (7)C3—C2—H2A107.5
O7ii—Na2—O392.10 (7)C1—C2—H2A107.5
O6iv—Na2—O398.95 (7)C3—C2—H2B107.5
O7ii—Na2—O4v132.38 (7)C1—C2—H2B107.5
O6iv—Na2—O4v125.90 (7)H2A—C2—H2B107.0
O3—Na2—O4v88.26 (7)O3—C3—O2123.0 (2)
O7ii—Na2—O4vi86.60 (7)O3—C3—C2116.4 (2)
O6iv—Na2—O4vi102.26 (7)O2—C3—C2120.6 (2)
O3—Na2—O4vi158.61 (8)C5—C4—C1115.2 (2)
O4v—Na2—O4vi77.09 (7)C5—C4—H4A108.5
O7ii—Na2—O5v168.65 (7)C1—C4—H4A108.5
O6iv—Na2—O5v77.74 (7)C5—C4—H4B108.5
O3—Na2—O5v77.04 (7)C1—C4—H4B108.5
O4v—Na2—O5v51.67 (6)H4A—C4—H4B107.5
O4vi—Na2—O5v104.71 (7)O5—C5—O4123.2 (2)
C1—O1—Co1106.67 (13)O5—C5—C4119.9 (2)
C1—O1—H1109.0O4—C5—C4116.9 (2)
Co1—O1—H1116.4O7—C6—O6124.8 (2)
C3—O2—Co1131.01 (16)O7—C6—C1118.2 (2)
C3—O2—Na1115.84 (16)O6—C6—C1117.0 (2)
Co1—O2—Na1112.10 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4xii0.851.792.640 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.851.792.640 (3)174

Symmetry code: (i) .

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