| Literature DB >> 24454127 |
Alexander S Bunev1, Elena V Sukhonosova2, Vladimir E Statsyuk1, Gennady I Ostapenko1, Victor N Khrustalev3.
Abstract
In the title compound, C12H9ClN2S, the imidazo[2,1-b]thia-zole fragment is planar (r.m.s. deviation = 0.003 Å), and the benzene ring is twisted slightly [by 5.65 (6)°] relative to this moiety. In the crystal, mol-ecules are linked by π-π stacking inter-actions into columns along [010]. The mol-ecules within the columns are arranged alternatively by their planar rotation of 180°. Thus, in the columns, there are the two types of π-π stacking inter-actions, namely, (i) between two imidazo[2,1-b]thia-zole fragments [inter-planar distance = 3.351 (2) Å] and (ii) between an imidazo[2,1-b]thia-zole fragment and the phenyl ring [inter-planar distance = 3.410 (5) Å]. There are no short contacts between the columns.Entities:
Year: 2013 PMID: 24454127 PMCID: PMC3884351 DOI: 10.1107/S1600536813028833
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9ClN2S | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 397–399 K |
| Mo | |
| Cell parameters from 2226 reflections | |
| θ = 2.7–30.6° | |
| α = 93.353 (1)° | µ = 0.50 mm−1 |
| β = 90.107 (1)° | |
| γ = 98.832 (1)° | Prism, colourless |
| 0.30 × 0.20 × 0.20 mm |
| Bruker APEXII CCD diffractometer | 2963 independent reflections |
| Radiation source: fine-focus sealed tube | 2306 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 29.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 6927 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2963 reflections | (Δ/σ)max = 0.001 |
| 146 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.38211 (8) | 0.73973 (6) | 1.00250 (4) | 0.04269 (15) | |
| S1 | 0.13039 (6) | 0.04797 (6) | 0.19530 (4) | 0.02548 (12) | |
| C2 | −0.1162 (2) | −0.0288 (2) | 0.18876 (16) | 0.0239 (3) | |
| H2 | −0.1768 | −0.1011 | 0.1184 | 0.029* | |
| C3 | −0.2120 (2) | 0.0238 (2) | 0.29218 (15) | 0.0203 (3) | |
| N4 | −0.08638 (17) | 0.12958 (16) | 0.37993 (12) | 0.0180 (3) | |
| C5 | −0.0956 (2) | 0.21865 (19) | 0.49862 (14) | 0.0189 (3) | |
| H5 | −0.2063 | 0.2255 | 0.5495 | 0.023* | |
| C6 | 0.0896 (2) | 0.29557 (19) | 0.52765 (14) | 0.0190 (3) | |
| N7 | 0.21503 (18) | 0.25589 (17) | 0.42952 (12) | 0.0204 (3) | |
| C7A | 0.1018 (2) | 0.1576 (2) | 0.34408 (15) | 0.0201 (3) | |
| C8 | −0.4178 (2) | −0.0182 (2) | 0.32472 (17) | 0.0258 (3) | |
| H8A | −0.4875 | −0.0863 | 0.2518 | 0.039* | |
| H8B | −0.4704 | 0.0911 | 0.3422 | 0.039* | |
| H8C | −0.4314 | −0.0873 | 0.4017 | 0.039* | |
| C9 | 0.1606 (2) | 0.40574 (19) | 0.64315 (14) | 0.0188 (3) | |
| C10 | 0.0334 (2) | 0.4576 (2) | 0.73671 (15) | 0.0230 (3) | |
| H10 | −0.1006 | 0.4220 | 0.7246 | 0.028* | |
| C11 | 0.1012 (3) | 0.5600 (2) | 0.84631 (16) | 0.0272 (4) | |
| H11 | 0.0142 | 0.5955 | 0.9087 | 0.033* | |
| C12 | 0.2971 (3) | 0.6103 (2) | 0.86436 (15) | 0.0271 (4) | |
| C13 | 0.4260 (2) | 0.5626 (2) | 0.77325 (16) | 0.0265 (4) | |
| H13 | 0.5598 | 0.5985 | 0.7860 | 0.032* | |
| C14 | 0.3567 (2) | 0.4617 (2) | 0.66341 (15) | 0.0222 (3) | |
| H14 | 0.4445 | 0.4298 | 0.6002 | 0.027* |
| Cl1 | 0.0636 (3) | 0.0379 (3) | 0.0254 (2) | 0.0095 (2) | −0.0140 (2) | −0.01208 (19) |
| S1 | 0.0251 (2) | 0.0306 (2) | 0.0207 (2) | 0.00669 (17) | 0.00010 (15) | −0.00563 (16) |
| C2 | 0.0266 (8) | 0.0227 (8) | 0.0224 (8) | 0.0048 (7) | −0.0059 (6) | −0.0019 (6) |
| C3 | 0.0214 (7) | 0.0173 (7) | 0.0225 (8) | 0.0040 (6) | −0.0064 (6) | 0.0014 (6) |
| N4 | 0.0190 (6) | 0.0166 (6) | 0.0190 (6) | 0.0045 (5) | −0.0015 (5) | 0.0008 (5) |
| C5 | 0.0220 (7) | 0.0181 (7) | 0.0172 (7) | 0.0053 (6) | 0.0011 (6) | 0.0017 (6) |
| C6 | 0.0230 (8) | 0.0173 (7) | 0.0176 (7) | 0.0054 (6) | 0.0003 (6) | 0.0019 (6) |
| N7 | 0.0199 (6) | 0.0221 (6) | 0.0191 (6) | 0.0034 (5) | 0.0004 (5) | −0.0007 (5) |
| C7A | 0.0211 (7) | 0.0215 (7) | 0.0187 (7) | 0.0064 (6) | 0.0011 (6) | 0.0007 (6) |
| C8 | 0.0212 (8) | 0.0263 (8) | 0.0292 (9) | 0.0027 (7) | −0.0041 (6) | −0.0027 (7) |
| C9 | 0.0253 (8) | 0.0142 (7) | 0.0172 (7) | 0.0028 (6) | −0.0018 (6) | 0.0031 (6) |
| C10 | 0.0275 (8) | 0.0190 (7) | 0.0230 (8) | 0.0049 (6) | 0.0014 (6) | 0.0027 (6) |
| C11 | 0.0417 (10) | 0.0228 (8) | 0.0192 (8) | 0.0107 (7) | 0.0030 (7) | 0.0021 (6) |
| C12 | 0.0438 (10) | 0.0193 (7) | 0.0178 (7) | 0.0047 (7) | −0.0072 (7) | −0.0019 (6) |
| C13 | 0.0321 (9) | 0.0218 (8) | 0.0249 (8) | 0.0010 (7) | −0.0067 (7) | 0.0027 (7) |
| C14 | 0.0262 (8) | 0.0199 (7) | 0.0200 (7) | 0.0019 (6) | 0.0000 (6) | 0.0022 (6) |
| Cl1—C12 | 1.7450 (17) | C8—H8A | 0.9800 |
| S1—C7A | 1.7399 (16) | C8—H8B | 0.9800 |
| S1—C2 | 1.7512 (17) | C8—H8C | 0.9800 |
| C2—C3 | 1.343 (2) | C9—C14 | 1.397 (2) |
| C2—H2 | 0.9500 | C9—C10 | 1.404 (2) |
| C3—N4 | 1.4018 (19) | C10—C11 | 1.384 (2) |
| C3—C8 | 1.483 (2) | C10—H10 | 0.9500 |
| N4—C7A | 1.3685 (19) | C11—C12 | 1.388 (2) |
| N4—C5 | 1.3782 (19) | C11—H11 | 0.9500 |
| C5—C6 | 1.376 (2) | C12—C13 | 1.385 (2) |
| C5—H5 | 0.9500 | C13—C14 | 1.383 (2) |
| C6—N7 | 1.3996 (18) | C13—H13 | 0.9500 |
| C6—C9 | 1.466 (2) | C14—H14 | 0.9500 |
| N7—C7A | 1.315 (2) | ||
| C7A—S1—C2 | 89.68 (7) | H8A—C8—H8B | 109.5 |
| C3—C2—S1 | 113.96 (12) | C3—C8—H8C | 109.5 |
| C3—C2—H2 | 123.0 | H8A—C8—H8C | 109.5 |
| S1—C2—H2 | 123.0 | H8B—C8—H8C | 109.5 |
| C2—C3—N4 | 110.46 (14) | C14—C9—C10 | 118.13 (14) |
| C2—C3—C8 | 130.15 (15) | C14—C9—C6 | 120.96 (14) |
| N4—C3—C8 | 119.35 (13) | C10—C9—C6 | 120.91 (14) |
| C7A—N4—C5 | 106.48 (12) | C11—C10—C9 | 120.71 (16) |
| C7A—N4—C3 | 115.56 (13) | C11—C10—H10 | 119.6 |
| C5—N4—C3 | 137.96 (13) | C9—C10—H10 | 119.6 |
| C6—C5—N4 | 105.33 (12) | C10—C11—C12 | 119.54 (15) |
| C6—C5—H5 | 127.3 | C10—C11—H11 | 120.2 |
| N4—C5—H5 | 127.3 | C12—C11—H11 | 120.2 |
| C5—C6—N7 | 111.17 (13) | C13—C12—C11 | 121.06 (15) |
| C5—C6—C9 | 128.03 (14) | C13—C12—Cl1 | 119.50 (14) |
| N7—C6—C9 | 120.79 (14) | C11—C12—Cl1 | 119.43 (13) |
| C7A—N7—C6 | 103.37 (12) | C14—C13—C12 | 118.94 (16) |
| N7—C7A—N4 | 113.65 (13) | C14—C13—H13 | 120.5 |
| N7—C7A—S1 | 136.01 (12) | C12—C13—H13 | 120.5 |
| N4—C7A—S1 | 110.33 (11) | C13—C14—C9 | 121.60 (15) |
| C3—C8—H8A | 109.5 | C13—C14—H14 | 119.2 |
| C3—C8—H8B | 109.5 | C9—C14—H14 | 119.2 |
| C7A—S1—C2—C3 | −0.51 (13) | C3—N4—C7A—S1 | −0.54 (16) |
| S1—C2—C3—N4 | 0.30 (17) | C2—S1—C7A—N7 | 179.01 (17) |
| S1—C2—C3—C8 | −177.40 (14) | C2—S1—C7A—N4 | 0.57 (12) |
| C2—C3—N4—C7A | 0.17 (19) | C5—C6—C9—C14 | 174.39 (15) |
| C8—C3—N4—C7A | 178.15 (13) | N7—C6—C9—C14 | −5.4 (2) |
| C2—C3—N4—C5 | −179.57 (16) | C5—C6—C9—C10 | −5.4 (2) |
| C8—C3—N4—C5 | −1.6 (3) | N7—C6—C9—C10 | 174.78 (14) |
| C7A—N4—C5—C6 | −0.14 (16) | C14—C9—C10—C11 | −0.6 (2) |
| C3—N4—C5—C6 | 179.61 (16) | C6—C9—C10—C11 | 179.28 (14) |
| N4—C5—C6—N7 | −0.20 (17) | C9—C10—C11—C12 | −0.7 (2) |
| N4—C5—C6—C9 | −179.99 (14) | C10—C11—C12—C13 | 1.2 (2) |
| C5—C6—N7—C7A | 0.46 (16) | C10—C11—C12—Cl1 | 179.89 (12) |
| C9—C6—N7—C7A | −179.73 (13) | C11—C12—C13—C14 | −0.6 (2) |
| C6—N7—C7A—N4 | −0.56 (17) | Cl1—C12—C13—C14 | −179.23 (12) |
| C6—N7—C7A—S1 | −178.95 (14) | C12—C13—C14—C9 | −0.7 (2) |
| C5—N4—C7A—N7 | 0.46 (17) | C10—C9—C14—C13 | 1.2 (2) |
| C3—N4—C7A—N7 | −179.35 (12) | C6—C9—C14—C13 | −178.60 (14) |
| C5—N4—C7A—S1 | 179.27 (10) |