Literature DB >> 24454108

Bis(2,4,6-tri-amino-1,3,5-triazin-1-ium) 2-[bis-(carboxyl-atometh-yl)aza-nium-yl]acetate trihydrate.

Kreshnik Hoxha1, Timothy J Prior1.   

Abstract

The title compound, 2C3H7N6 (+)·C6H7NO6 (2-)·3H2O, was obtained by mixing melamine and nitrilo-tri-acetic acid in aqueous solution. There is proton transfer from the nitrilo-triacteic acid to melamine to produce two melaminium cations and an inter-nal proton transfer to generate the [HN(CH2COO)](2-) zwitterion. The melaminium cations are arranged in hydrogen-bonded tapes formed by N-H⋯N inter-actions. These tapes extend parallel to the [010] direction and are stacked parallel to the a axis at a mean separation of 3.3559 (11) Å. Between these tapes lie the anions and lattice water mol-ecules. Further O-H⋯O and N-H⋯O hydrogen bonds exist between the water mol-ecules, the anions, and the melaminium cations, generating a three-dimensional array. The crystal examined was found to be twinned by a twofold rotation about the direct lattice direction [100]. The two twin components were present in the ratio 0.5918:0.4082 (14).

Entities:  

Year:  2013        PMID: 24454108      PMCID: PMC3884332          DOI: 10.1107/S1600536813028250

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For compounds of melamine with simple carb­oxy­lic acid, see, for example: Froschauer & Weil (2012 ▶); Eppel & Bernstein (2009 ▶); Perpétuo & Janczak (2002 ▶). For those with tri­carb­oxy­lic acids, see: Eshtiagh-Hosseini et al. (2010 ▶); Huczynski et al. (2009 ▶); Perpetuo & Janczak (2003 ▶). For assignment of protonation on the grounds of bond angle and bond length, see: Childs et al. (2007 ▶) and Hingerty et al. (1981 ▶), respectively. An introduction to graph-set theory may be found in Etter et al. (1990 ▶).

Experimental

Crystal data

2C3H7N6 +·C6H7NO6 2−·3H2O M = 497.43 Triclinic, a = 6.7117 (11) Å b = 12.1495 (19) Å c = 13.102 (3) Å α = 82.714 (15)° β = 89.252 (16)° γ = 83.238 (13)° V = 1052.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 150 K 0.36 × 0.16 × 0.04 mm

Data collection

Stoe IPDS2 diffractometer Absorption correction: analytical (X-RED and X-SHAPE; Stoe & Cie, 2002 ▶) T min = 0.957, T max = 0.994 10946 measured reflections 10946 independent reflections 5515 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.084 wR(F 2) = 0.244 S = 0.95 10946 reflections 327 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.48 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813028250/zl2565sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028250/zl2565Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028250/zl2565Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028250/zl2565Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C3H7N6+·C6H7NO62·3H2OZ = 2
Mr = 497.43F(000) = 524
Triclinic, P1Dx = 1.570 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7117 (11) ÅCell parameters from 4000 reflections
b = 12.1495 (19) Åθ = 1.7–29.5°
c = 13.102 (3) ŵ = 0.13 mm1
α = 82.714 (15)°T = 150 K
β = 89.252 (16)°Needle, colourless
γ = 83.238 (13)°0.36 × 0.16 × 0.04 mm
V = 1052.4 (3) Å3
Stoe IPDS2 diffractometer10946 independent reflections
Radiation source: fine-focus sealed tube5515 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
Detector resolution: 6.67 pixels mm-1θmax = 25.3°, θmin = 1.7°
ω scansh = −8→7
Absorption correction: analytical (X-RED and X-SHAPE; Stoe & Cie, 2002)k = −14→14
Tmin = 0.957, Tmax = 0.994l = −15→15
10946 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.084Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.244H atoms treated by a mixture of independent and constrained refinement
S = 0.95w = 1/[σ2(Fo2) + (0.1396P)2] where P = (Fo2 + 2Fc2)/3
10946 reflections(Δ/σ)max < 0.001
327 parametersΔρmax = 0.40 e Å3
10 restraintsΔρmin = −0.48 e Å3
Experimental. a face indexed abosorption correction was applied. this utilised the Tompa method implmented within Stoe X-Area.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7947 (5)0.3396 (3)−0.0788 (3)0.0284 (8)
C20.7256 (5)0.4231 (3)0.0654 (3)0.0282 (8)
C30.7125 (5)0.2304 (3)0.0665 (3)0.0269 (8)
N10.7670 (4)0.2371 (2)−0.0319 (2)0.0288 (7)
N20.7753 (4)0.4355 (2)−0.0339 (2)0.0283 (7)
N30.6891 (4)0.3237 (2)0.1167 (2)0.0308 (7)
H30.65080.31890.18150.037*
N110.8471 (4)0.3485 (2)−0.1770 (2)0.0312 (7)
H11A0.86260.2887−0.20930.037*
H11B0.86650.4140−0.21010.037*
N120.7108 (4)0.5111 (2)0.1170 (2)0.0330 (7)
H12A0.73370.57680.08560.040*
H12B0.67810.50370.18260.040*
N130.6798 (4)0.1346 (2)0.1184 (3)0.0329 (7)
H13A0.69390.07350.08820.039*
H13B0.64380.13140.18340.039*
C210.7361 (5)0.8238 (3)0.0554 (3)0.0282 (8)
C220.7847 (5)0.9412 (3)−0.0907 (3)0.0284 (8)
C230.7972 (5)0.7470 (3)−0.0937 (3)0.0295 (8)
N210.7571 (4)0.7302 (2)0.0062 (2)0.0283 (7)
N220.7439 (4)0.9294 (2)0.0094 (2)0.0298 (7)
N230.8157 (4)0.8499 (2)−0.1437 (2)0.0293 (7)
H230.84720.8584−0.20940.035*
N310.7031 (4)0.8087 (2)0.1552 (2)0.0337 (7)
H31A0.68690.86640.19010.040*
H31B0.69740.74090.18700.040*
N320.7965 (5)1.0404 (2)−0.1423 (2)0.0348 (7)
H32A0.77731.1004−0.11060.042*
H32B0.82371.0467−0.20850.042*
N330.8209 (4)0.6595 (2)−0.1465 (2)0.0309 (7)
H33A0.81000.5920−0.11500.037*
H33B0.84750.6691−0.21270.037*
N500.6450 (4)0.3141 (2)0.5208 (2)0.0274 (6)
H500.60990.37990.47710.033*
C510.5536 (5)0.3342 (3)0.6213 (3)0.0312 (8)
H51A0.64030.37720.65770.037*
H51B0.54470.26180.66410.037*
C520.3453 (5)0.3985 (3)0.6077 (3)0.0310 (8)
C530.8705 (5)0.2958 (3)0.5187 (3)0.0293 (8)
H53A0.92350.36120.54180.035*
H53B0.91490.29110.44690.035*
C540.9599 (5)0.1904 (3)0.5862 (3)0.0306 (8)
C550.5523 (5)0.2261 (3)0.4741 (3)0.0289 (8)
H55A0.41210.22480.49830.035*
H55B0.62710.15210.49700.035*
C560.5540 (5)0.2475 (3)0.3566 (3)0.0321 (8)
O10.2949 (4)0.4461 (2)0.5204 (2)0.0343 (6)
O20.2429 (4)0.4017 (2)0.6894 (2)0.0354 (6)
O30.8994 (4)0.1721 (2)0.6763 (2)0.0393 (7)
O41.0971 (4)0.1308 (2)0.5460 (2)0.0509 (8)
O50.4934 (4)0.1730 (2)0.3111 (2)0.0375 (6)
O60.6089 (4)0.3375 (2)0.3162 (2)0.0366 (6)
O1W−0.1047 (4)0.5512 (2)0.6739 (2)0.0350 (6)
H1AW−0.152 (6)0.546 (4)0.616 (2)0.053*
H1BW0.012 (4)0.520 (3)0.667 (3)0.053*
O2W1.0355 (5)0.0954 (2)0.3413 (2)0.0458 (7)
H2AW1.002 (8)0.032 (2)0.355 (4)0.069*
H2BW1.087 (7)0.117 (4)0.3894 (16)0.069*
O3W1.4067 (5)0.0556 (2)0.6843 (2)0.0460 (7)
H3AW1.302 (5)0.067 (4)0.648 (4)0.069*
H3BW1.455 (7)−0.010 (2)0.679 (4)0.069*
U11U22U33U12U13U23
C10.0177 (17)0.0277 (19)0.039 (2)−0.0022 (13)−0.0022 (15)−0.0002 (16)
C20.0198 (17)0.0231 (18)0.041 (2)−0.0033 (13)−0.0019 (15)−0.0003 (15)
C30.0167 (16)0.0252 (18)0.038 (2)−0.0027 (13)−0.0014 (15)−0.0003 (16)
N10.0241 (15)0.0238 (15)0.0374 (18)−0.0041 (12)−0.0017 (13)0.0018 (13)
N20.0287 (15)0.0220 (15)0.0340 (17)−0.0041 (12)−0.0011 (13)−0.0011 (13)
N30.0306 (16)0.0251 (15)0.0363 (18)−0.0063 (12)0.0025 (13)0.0000 (13)
N110.0342 (16)0.0253 (15)0.0340 (18)−0.0061 (12)0.0023 (13)−0.0009 (13)
N120.0413 (18)0.0236 (15)0.0348 (18)−0.0078 (12)0.0050 (14)−0.0033 (13)
N130.0350 (17)0.0230 (15)0.0407 (19)−0.0083 (12)0.0041 (14)0.0005 (14)
C210.0200 (17)0.0247 (18)0.038 (2)−0.0021 (13)−0.0007 (15)0.0027 (16)
C220.0236 (18)0.0228 (18)0.039 (2)−0.0023 (13)−0.0027 (15)−0.0047 (16)
C230.0191 (17)0.0218 (18)0.047 (2)−0.0013 (13)−0.0018 (15)−0.0051 (16)
N210.0263 (15)0.0221 (15)0.0360 (18)−0.0036 (11)0.0008 (13)−0.0011 (13)
N220.0281 (15)0.0254 (16)0.0353 (18)−0.0023 (12)0.0002 (13)−0.0027 (13)
N230.0297 (16)0.0222 (15)0.0354 (17)−0.0043 (12)−0.0018 (13)0.0009 (13)
N310.0356 (17)0.0254 (16)0.0396 (19)−0.0038 (13)0.0031 (14)−0.0029 (14)
N320.0462 (18)0.0241 (16)0.0337 (18)−0.0043 (13)0.0028 (15)−0.0021 (14)
N330.0326 (16)0.0215 (15)0.0373 (18)−0.0020 (12)0.0022 (13)0.0000 (13)
N500.0253 (15)0.0250 (15)0.0314 (16)−0.0067 (11)0.0026 (12)0.0019 (12)
C510.0286 (19)0.0328 (19)0.032 (2)−0.0057 (14)0.0007 (15)−0.0028 (16)
C520.0275 (18)0.0283 (19)0.038 (2)−0.0097 (14)0.0008 (16)−0.0031 (17)
C530.0252 (18)0.0302 (19)0.032 (2)−0.0037 (14)0.0039 (15)−0.0006 (16)
C540.0225 (18)0.0301 (19)0.040 (2)−0.0041 (14)−0.0017 (16)−0.0066 (17)
C550.0293 (18)0.0261 (18)0.031 (2)−0.0056 (14)0.0010 (15)−0.0025 (16)
C560.0263 (19)0.029 (2)0.040 (2)−0.0057 (15)−0.0002 (16)0.0005 (17)
O10.0307 (13)0.0319 (14)0.0381 (16)−0.0018 (10)−0.0008 (11)0.0028 (12)
O20.0302 (14)0.0356 (14)0.0395 (15)−0.0013 (10)0.0061 (12)−0.0041 (12)
O30.0345 (15)0.0348 (15)0.0441 (17)0.0033 (11)0.0022 (13)0.0049 (13)
O40.0479 (17)0.0594 (19)0.0383 (16)0.0229 (14)0.0003 (14)−0.0058 (14)
O50.0387 (15)0.0350 (14)0.0406 (15)−0.0095 (11)0.0011 (12)−0.0068 (12)
O60.0425 (15)0.0343 (14)0.0331 (15)−0.0087 (12)−0.0005 (12)−0.0001 (12)
O1W0.0300 (14)0.0362 (15)0.0379 (15)−0.0015 (11)0.0013 (12)−0.0033 (12)
O2W0.0554 (18)0.0409 (17)0.0435 (17)−0.0172 (14)0.0046 (14)−0.0040 (14)
O3W0.0483 (18)0.0360 (15)0.0522 (19)0.0020 (13)−0.0064 (14)−0.0056 (14)
C1—N111.324 (5)N32—H32B0.8800
C1—N11.350 (4)N33—H33A0.8800
C1—N21.362 (4)N33—H33B0.8800
C2—N121.329 (4)N50—C511.482 (4)
C2—N21.334 (5)N50—C551.496 (4)
C2—N31.353 (4)N50—C531.504 (5)
C3—N131.312 (4)N50—H500.9300
C3—N11.330 (5)C51—C521.520 (5)
C3—N31.373 (4)C51—H51A0.9900
N3—H30.8800C51—H51B0.9900
N11—H11A0.8800C52—O11.247 (5)
N11—H11B0.8800C52—O21.267 (4)
N12—H12A0.8800C53—C541.525 (5)
N12—H12B0.8800C53—H53A0.9900
N13—H13A0.8800C53—H53B0.9900
N13—H13B0.8800C54—O31.246 (5)
C21—N311.317 (5)C54—O41.256 (4)
C21—N221.353 (4)C55—C561.528 (5)
C21—N211.368 (4)C55—H55A0.9900
C22—N321.315 (4)C55—H55B0.9900
C22—N221.329 (5)C56—O61.247 (4)
C22—N231.375 (4)C56—O51.253 (4)
C23—N211.328 (5)O1W—H1AW0.84 (2)
C23—N331.333 (4)O1W—H1BW0.84 (2)
C23—N231.355 (4)O2W—H2AW0.83 (2)
N23—H230.8800O2W—H2BW0.81 (2)
N31—H31A0.8800O3W—H3AW0.84 (2)
N31—H31B0.8800O3W—H3BW0.83 (2)
N32—H32A0.8800
N11—C1—N1117.6 (3)C22—N32—H32B120.0
N11—C1—N2116.6 (3)H32A—N32—H32B120.0
N1—C1—N2125.8 (3)C23—N33—H33A120.0
N12—C2—N2119.4 (3)C23—N33—H33B120.0
N12—C2—N3118.1 (3)H33A—N33—H33B120.0
N2—C2—N3122.5 (3)C51—N50—C55112.0 (3)
N13—C3—N1121.0 (3)C51—N50—C53115.8 (3)
N13—C3—N3118.1 (3)C55—N50—C53112.2 (3)
N1—C3—N3120.9 (3)C51—N50—H50105.2
C3—N1—C1116.5 (3)C55—N50—H50105.2
C2—N2—C1115.0 (3)C53—N50—H50105.2
C2—N3—C3119.2 (3)N50—C51—C52111.3 (3)
C2—N3—H3120.4N50—C51—H51A109.4
C3—N3—H3120.4C52—C51—H51A109.4
C1—N11—H11A120.0N50—C51—H51B109.4
C1—N11—H11B120.0C52—C51—H51B109.4
H11A—N11—H11B120.0H51A—C51—H51B108.0
C2—N12—H12A120.0O1—C52—O2126.5 (3)
C2—N12—H12B120.0O1—C52—C51118.3 (3)
H12A—N12—H12B120.0O2—C52—C51115.1 (3)
C3—N13—H13A120.0N50—C53—C54113.7 (3)
C3—N13—H13B120.0N50—C53—H53A108.8
H13A—N13—H13B120.0C54—C53—H53A108.8
N31—C21—N22118.1 (3)N50—C53—H53B108.8
N31—C21—N21116.6 (3)C54—C53—H53B108.8
N22—C21—N21125.2 (3)H53A—C53—H53B107.7
N32—C22—N22121.2 (3)O3—C54—O4125.1 (3)
N32—C22—N23117.8 (3)O3—C54—C53118.9 (3)
N22—C22—N23121.0 (3)O4—C54—C53115.9 (3)
N21—C23—N33118.9 (3)N50—C55—C56111.5 (3)
N21—C23—N23122.2 (3)N50—C55—H55A109.3
N33—C23—N23119.0 (3)C56—C55—H55A109.3
C23—N21—C21115.6 (3)N50—C55—H55B109.3
C22—N22—C21116.5 (3)C56—C55—H55B109.3
C23—N23—C22119.4 (3)H55A—C55—H55B108.0
C23—N23—H23120.3O6—C56—O5126.9 (4)
C22—N23—H23120.3O6—C56—C55117.4 (3)
C21—N31—H31A120.0O5—C56—C55115.6 (3)
C21—N31—H31B120.0H1AW—O1W—H1BW100 (4)
H31A—N31—H31B120.0H2AW—O2W—H2BW113 (4)
C22—N32—H32A120.0H3AW—O3W—H3BW105 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···O50.882.603.296 (4)136
N3—H3···O60.881.822.684 (4)166
N11—H11A···O3i0.882.183.042 (4)166
N11—H11B···O1Wii0.882.132.989 (4)164
N12—H12A···N210.882.042.915 (4)174
N12—H12B···O2iii0.882.252.904 (4)131
N12—H12B···O60.882.583.260 (4)135
N13—H13A···N22iv0.882.133.012 (4)176
N13—H13B···O50.882.032.870 (4)159
N23—H23···O2Wv0.881.942.793 (4)164
N31—H31A···O3Wvi0.882.062.870 (4)153
N31—H31B···O2iii0.882.223.048 (4)157
N32—H32A···N1vii0.882.062.933 (4)173
N32—H32B···O3viii0.882.112.817 (4)137
N33—H33A···N20.882.092.973 (4)177
N33—H33B···O1Wii0.882.192.850 (4)132
N50—H50···O1iii0.932.282.969 (4)130
C55—H55A···O4ix0.992.553.470 (5)154
O1W—H1AW···O1x0.84 (2)2.02 (2)2.856 (4)172 (4)
O1W—H1BW···O20.84 (2)1.98 (3)2.775 (3)157 (4)
O2W—H2AW···O3xi0.83 (2)2.57 (3)3.265 (4)143 (4)
O2W—H2AW···O4xi0.83 (2)2.38 (3)3.168 (4)159 (4)
O2W—H2BW···O40.81 (2)2.08 (2)2.812 (4)150 (4)
O3W—H3AW···O40.84 (2)1.95 (3)2.768 (4)163 (5)
O3W—H3BW···O5xi0.83 (2)1.96 (3)2.773 (4)165 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O50.882.603.296 (4)136
N3—H3⋯O60.881.822.684 (4)166
N11—H11A⋯O3i 0.882.183.042 (4)166
N11—H11B⋯O1W ii 0.882.132.989 (4)164
N12—H12A⋯N210.882.042.915 (4)174
N12—H12B⋯O2iii 0.882.252.904 (4)131
N12—H12B⋯O60.882.583.260 (4)135
N13—H13A⋯N22iv 0.882.133.012 (4)176
N13—H13B⋯O50.882.032.870 (4)159
N23—H23⋯O2W v 0.881.942.793 (4)164
N31—H31A⋯O3W vi 0.882.062.870 (4)153
N31—H31B⋯O2iii 0.882.223.048 (4)157
N32—H32A⋯N1vii 0.882.062.933 (4)173
N32—H32B⋯O3viii 0.882.112.817 (4)137
N33—H33A⋯N20.882.092.973 (4)177
N33—H33B⋯O1W ii 0.882.192.850 (4)132
N50—H50⋯O1iii 0.932.282.969 (4)130
C55—H55A⋯O4ix 0.992.553.470 (5)154
O1W—H1AW⋯O1x 0.84 (2)2.02 (2)2.856 (4)172 (4)
O1W—H1BW⋯O20.84 (2)1.98 (3)2.775 (3)157 (4)
O2W—H2AW⋯O3xi 0.83 (2)2.57 (3)3.265 (4)143 (4)
O2W—H2AW⋯O4xi 0.83 (2)2.38 (3)3.168 (4)159 (4)
O2W—H2BW⋯O40.81 (2)2.08 (2)2.812 (4)150 (4)
O3W—H3AW⋯O40.84 (2)1.95 (3)2.768 (4)163 (5)
O3W—H3BW⋯O5xi 0.83 (2)1.96 (3)2.773 (4)165 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) ; (x) ; (xi) .

  5 in total

1.  The salt-cocrystal continuum: the influence of crystal structure on ionization state.

Authors:  Scott L Childs; G Patrick Stahly; Aeri Park
Journal:  Mol Pharm       Date:  2007-04-27       Impact factor: 4.939

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Melaminium acetate acetic acid solvate monohydrate.

Authors:  Genivaldo Julio Perpétuo; Jan Janczak
Journal:  Acta Crystallogr C       Date:  2002-01-23       Impact factor: 1.172

5.  Melaminium hydrogen malonate.

Authors:  Barbara Froschauer; Matthias Weil
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  5 in total

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