Literature DB >> 24454097

N'-[(E)-4-Meth-oxy-benzyl-idene]-2-(5-meth-oxy-2-methyl-1H-indol-3-yl)acetohydrazide.

Mehmet Akkurt1, Joel T Mague2, Shaaban K Mohamed3, Antar A Abelhamid4, Mustafa R Albayati5.   

Abstract

The conformation adopted by the title compound, C20H21N3O3, in the crystal is 'J'-shaped and appears to be at least partially directed by a weak intra-molecular C-H⋯N hydrogen bond. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming dimers with R 2 (2)(8) motifs. Furthermore, these dimers connect to each other via C-H⋯O and N-H⋯O hydrogen bonds to form a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454097      PMCID: PMC3884321          DOI: 10.1107/S1600536813027050

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general medical applications of non-steriodal anti-inflammatory drugs (NSAIDs), see: Richy et al. (2004 ▶). For the undesirable side effects of such drugs, see: Allison et al. (1992 ▶); McMahon (2001 ▶); Rocha et al. (2001 ▶); Halen et al. (2009 ▶). For a similar structure, see: Mague et al. (2013 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H21N3O3 M = 351.40 Triclinic, a = 7.1894 (2) Å b = 10.4055 (3) Å c = 12.4403 (4) Å α = 107.983 (2)° β = 92.451 (2)° γ = 97.882 (2)° V = 873.24 (5) Å3 Z = 2 Cu Kα radiation μ = 0.74 mm−1 T = 100 K 0.14 × 0.12 × 0.08 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.85, T max = 0.94 8928 measured reflections 3121 independent reflections 2579 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.04 3121 reflections 246 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813027050/sj5357sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027050/sj5357Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N3O3Z = 2
Mr = 351.40F(000) = 372
Triclinic, P1Dx = 1.336 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 7.1894 (2) ÅCell parameters from 6305 reflections
b = 10.4055 (3) Åθ = 3.8–68.2°
c = 12.4403 (4) ŵ = 0.74 mm1
α = 107.983 (2)°T = 100 K
β = 92.451 (2)°Block, colourless
γ = 97.882 (2)°0.14 × 0.12 × 0.08 mm
V = 873.24 (5) Å3
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer3121 independent reflections
Radiation source: INCOATEC IµS micro–focus source2579 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.4167 pixels mm-1θmax = 68.2°, θmin = 3.8°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −11→12
Tmin = 0.85, Tmax = 0.94l = −14→12
8928 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.036w = 1/[Σ2(Fo2) + (0.0398P)2 + 0.2493P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.090(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.19 e Å3
3121 reflectionsΔρmin = −0.18 e Å3
246 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.71418 (17)0.52381 (11)0.54515 (9)0.0430 (4)
O20.98707 (13)0.84392 (9)1.03898 (8)0.0292 (3)
O3−0.13304 (14)0.95693 (11)0.60125 (9)0.0371 (3)
N10.79353 (17)0.35490 (13)0.91900 (12)0.0351 (4)
N20.76381 (16)0.90476 (12)0.94351 (10)0.0260 (3)
N30.58416 (16)0.88308 (12)0.89050 (9)0.0265 (3)
C10.7349 (3)0.44162 (19)0.43283 (14)0.0480 (6)
C20.7324 (2)0.46796 (15)0.63133 (13)0.0345 (5)
C30.7787 (2)0.33672 (16)0.61512 (15)0.0388 (5)
C40.7991 (2)0.28921 (15)0.70661 (15)0.0384 (5)
C50.7752 (2)0.37351 (15)0.81367 (14)0.0326 (4)
C60.72832 (19)0.50583 (14)0.83158 (13)0.0296 (4)
C70.7039 (2)0.55117 (15)0.73782 (13)0.0310 (4)
C80.7797 (2)0.48079 (17)1.12353 (14)0.0379 (5)
C90.76673 (19)0.47320 (15)1.00178 (14)0.0317 (5)
C100.72383 (19)0.56677 (14)0.95159 (12)0.0281 (4)
C110.67910 (19)0.70663 (14)1.01121 (12)0.0284 (4)
C120.82053 (19)0.82164 (14)0.99829 (11)0.0256 (4)
C130.5515 (2)0.97217 (14)0.84341 (11)0.0272 (4)
C140.3702 (2)0.96285 (14)0.78169 (11)0.0269 (4)
C150.2179 (2)0.86146 (14)0.77499 (12)0.0290 (4)
C160.0484 (2)0.85462 (15)0.71417 (12)0.0302 (4)
C170.0283 (2)0.95182 (15)0.66076 (12)0.0296 (4)
C180.1787 (2)1.05399 (15)0.66754 (12)0.0322 (5)
C190.3475 (2)1.05862 (15)0.72627 (12)0.0305 (5)
C20−0.2801 (2)0.84238 (17)0.57471 (14)0.0380 (5)
H10.855 (3)0.295 (2)0.9360 (16)0.052 (5)*
H1A0.862200.417700.428900.0720*
H1B0.714900.492700.380100.0720*
H1C0.641900.357800.412000.0720*
H20.847 (2)0.9799 (18)0.9426 (14)0.037 (4)*
H30.796000.280500.541100.0470*
H40.829000.200300.696100.0460*
H70.668200.638300.747300.0370*
H8A0.663100.432101.139700.0570*
H8B0.797800.576801.171400.0570*
H8C0.886700.438401.139600.0570*
H11A0.674200.717901.093000.0340*
H11B0.552600.713700.980900.0340*
H130.648101.046500.848800.0330*
H150.230200.795900.812600.0350*
H16−0.053500.783800.709100.0360*
H180.165001.120900.631500.0390*
H190.450101.128000.729200.0370*
H20A−0.232100.759600.531700.0570*
H20B−0.384500.857400.529100.0570*
H20C−0.325000.831300.645100.0570*
U11U22U33U12U13U23
O10.0543 (7)0.0399 (6)0.0312 (6)0.0116 (5)0.0040 (5)0.0044 (5)
O20.0263 (5)0.0249 (5)0.0361 (5)0.0024 (4)−0.0050 (4)0.0112 (4)
O30.0322 (6)0.0354 (6)0.0412 (6)0.0052 (5)−0.0101 (5)0.0103 (5)
N10.0263 (7)0.0250 (7)0.0565 (9)0.0034 (5)−0.0021 (6)0.0177 (6)
N20.0243 (6)0.0238 (6)0.0290 (6)0.0014 (5)−0.0035 (5)0.0091 (5)
N30.0257 (6)0.0267 (6)0.0251 (6)0.0044 (5)−0.0018 (5)0.0060 (5)
C10.0488 (11)0.0495 (10)0.0348 (9)0.0063 (8)0.0034 (8)−0.0016 (8)
C20.0298 (8)0.0309 (8)0.0389 (8)0.0030 (6)0.0015 (6)0.0063 (7)
C30.0322 (8)0.0288 (8)0.0469 (9)0.0022 (6)0.0044 (7)0.0007 (7)
C40.0269 (8)0.0232 (8)0.0604 (11)0.0041 (6)0.0038 (7)0.0064 (7)
C50.0217 (7)0.0253 (7)0.0494 (9)0.0010 (6)−0.0006 (6)0.0117 (7)
C60.0201 (7)0.0245 (7)0.0421 (8)0.0007 (5)−0.0014 (6)0.0093 (6)
C70.0271 (8)0.0257 (7)0.0383 (8)0.0038 (6)−0.0007 (6)0.0079 (6)
C80.0301 (8)0.0363 (9)0.0516 (10)−0.0003 (6)−0.0071 (7)0.0240 (8)
C90.0199 (7)0.0287 (8)0.0469 (9)−0.0017 (6)−0.0035 (6)0.0159 (7)
C100.0212 (7)0.0250 (7)0.0388 (8)0.0006 (5)−0.0021 (6)0.0131 (6)
C110.0266 (7)0.0280 (8)0.0312 (7)0.0028 (6)−0.0002 (6)0.0113 (6)
C120.0275 (8)0.0227 (7)0.0246 (7)0.0053 (6)0.0004 (6)0.0044 (6)
C130.0298 (8)0.0240 (7)0.0266 (7)0.0031 (6)0.0004 (6)0.0072 (6)
C140.0297 (8)0.0257 (7)0.0237 (7)0.0063 (6)0.0006 (6)0.0049 (6)
C150.0323 (8)0.0250 (7)0.0301 (7)0.0063 (6)0.0008 (6)0.0089 (6)
C160.0284 (8)0.0257 (7)0.0336 (8)0.0026 (6)0.0015 (6)0.0060 (6)
C170.0296 (8)0.0303 (8)0.0264 (7)0.0094 (6)−0.0022 (6)0.0042 (6)
C180.0362 (8)0.0313 (8)0.0316 (8)0.0066 (6)−0.0019 (6)0.0136 (7)
C190.0298 (8)0.0301 (8)0.0316 (8)0.0026 (6)−0.0004 (6)0.0111 (6)
C200.0293 (8)0.0443 (9)0.0367 (8)0.0029 (7)−0.0040 (6)0.0098 (7)
O1—C11.422 (2)C14—C151.393 (2)
O1—C21.3776 (19)C15—C161.388 (2)
O2—C121.2422 (17)C16—C171.390 (2)
O3—C171.3653 (18)C17—C181.389 (2)
O3—C201.425 (2)C18—C191.377 (2)
N1—C51.386 (2)C1—H1A0.9800
N1—C91.383 (2)C1—H1B0.9800
N2—N31.3818 (16)C1—H1C0.9800
N2—C121.3475 (19)C3—H30.9500
N3—C131.2810 (19)C4—H40.9500
N1—H10.88 (2)C7—H70.9500
N2—H20.920 (18)C8—H8A0.9800
C2—C31.406 (2)C8—H8B0.9800
C2—C71.382 (2)C8—H8C0.9800
C3—C41.384 (2)C11—H11A0.9900
C4—C51.383 (2)C11—H11B0.9900
C5—C61.415 (2)C13—H130.9500
C6—C101.434 (2)C15—H150.9500
C6—C71.400 (2)C16—H160.9500
C8—C91.490 (2)C18—H180.9500
C9—C101.369 (2)C19—H190.9500
C10—C111.501 (2)C20—H20A0.9800
C11—C121.514 (2)C20—H20B0.9800
C13—C141.460 (2)C20—H20C0.9800
C14—C191.398 (2)
C1—O1—C2118.05 (13)C14—C19—C18121.03 (14)
C17—O3—C20117.85 (13)O1—C1—H1A109.00
C5—N1—C9109.09 (13)O1—C1—H1B109.00
N3—N2—C12122.52 (12)O1—C1—H1C109.00
N2—N3—C13114.94 (12)H1A—C1—H1B109.00
C9—N1—H1120.9 (12)H1A—C1—H1C109.00
C5—N1—H1126.0 (13)H1B—C1—H1C109.00
N3—N2—H2118.7 (10)C2—C3—H3120.00
C12—N2—H2118.8 (10)C4—C3—H3120.00
O1—C2—C3123.67 (14)C3—C4—H4121.00
O1—C2—C7115.23 (14)C5—C4—H4121.00
C3—C2—C7121.10 (15)C2—C7—H7120.00
C2—C3—C4120.20 (16)C6—C7—H7120.00
C3—C4—C5118.84 (15)C9—C8—H8A109.00
C4—C5—C6121.74 (15)C9—C8—H8B109.00
N1—C5—C6107.17 (14)C9—C8—H8C110.00
N1—C5—C4131.07 (15)H8A—C8—H8B109.00
C5—C6—C10107.06 (13)H8A—C8—H8C109.00
C7—C6—C10134.17 (14)H8B—C8—H8C109.00
C5—C6—C7118.73 (14)C10—C11—H11A109.00
C2—C7—C6119.35 (15)C10—C11—H11B109.00
N1—C9—C8120.08 (14)C12—C11—H11A109.00
N1—C9—C10109.40 (14)C12—C11—H11B109.00
C8—C9—C10130.47 (15)H11A—C11—H11B108.00
C6—C10—C11126.49 (13)N3—C13—H13119.00
C9—C10—C11126.29 (13)C14—C13—H13119.00
C6—C10—C9107.22 (13)C14—C15—H15119.00
C10—C11—C12113.58 (12)C16—C15—H15119.00
N2—C12—C11119.29 (12)C15—C16—H16120.00
O2—C12—N2118.72 (13)C17—C16—H16120.00
O2—C12—C11121.97 (13)C17—C18—H18120.00
N3—C13—C14121.97 (13)C19—C18—H18120.00
C13—C14—C19119.12 (13)C14—C19—H19119.00
C15—C14—C19118.23 (13)C18—C19—H19119.00
C13—C14—C15122.65 (13)O3—C20—H20A110.00
C14—C15—C16121.06 (14)O3—C20—H20B109.00
C15—C16—C17119.73 (14)O3—C20—H20C109.00
O3—C17—C16124.68 (14)H20A—C20—H20B109.00
C16—C17—C18119.73 (13)H20A—C20—H20C109.00
O3—C17—C18115.59 (14)H20B—C20—H20C109.00
C17—C18—C19120.21 (15)
C1—O1—C2—C33.0 (2)C10—C6—C7—C2174.92 (15)
C1—O1—C2—C7−177.73 (15)C7—C6—C10—C9−177.33 (16)
C20—O3—C17—C18169.28 (13)C5—C6—C7—C2−2.2 (2)
C20—O3—C17—C16−11.6 (2)C5—C6—C10—C90.04 (16)
C9—N1—C5—C6−2.29 (16)C8—C9—C10—C110.6 (3)
C5—N1—C9—C102.37 (17)N1—C9—C10—C6−1.46 (16)
C9—N1—C5—C4176.09 (16)N1—C9—C10—C11178.14 (13)
C5—N1—C9—C8−179.76 (13)C8—C9—C10—C6−179.03 (15)
C12—N2—N3—C13179.16 (13)C6—C10—C11—C12−64.10 (18)
N3—N2—C12—C11−5.17 (19)C9—C10—C11—C12116.38 (16)
N3—N2—C12—O2176.44 (12)C10—C11—C12—O2−65.23 (17)
N2—N3—C13—C14178.67 (12)C10—C11—C12—N2116.43 (14)
O1—C2—C3—C4178.35 (14)N3—C13—C14—C19−176.06 (13)
C7—C2—C3—C4−0.9 (2)N3—C13—C14—C153.6 (2)
C3—C2—C7—C62.4 (2)C13—C14—C19—C18−179.70 (13)
O1—C2—C7—C6−176.95 (13)C15—C14—C19—C180.7 (2)
C2—C3—C4—C5−0.7 (2)C13—C14—C15—C16−179.08 (13)
C3—C4—C5—N1−177.38 (15)C19—C14—C15—C160.6 (2)
C3—C4—C5—C60.8 (2)C14—C15—C16—C17−1.3 (2)
N1—C5—C6—C7179.22 (13)C15—C16—C17—C180.8 (2)
C4—C5—C6—C70.7 (2)C15—C16—C17—O3−178.29 (13)
C4—C5—C6—C10−177.19 (14)O3—C17—C18—C19179.57 (13)
N1—C5—C6—C101.37 (16)C16—C17—C18—C190.4 (2)
C7—C6—C10—C113.1 (3)C17—C18—C19—C14−1.2 (2)
C5—C6—C10—C11−179.56 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.88 (2)2.04 (2)2.9212 (17)174.0 (18)
N2—H2···O2ii0.920 (18)1.988 (18)2.9025 (16)171.9 (15)
C4—H4···O3iii0.952.503.410 (2)161
C11—H11B···N30.992.362.8373 (19)109
C20—H20A···O1iv0.982.493.215 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.88 (2)2.04 (2)2.9212 (17)174.0 (18)
N2—H2⋯O2ii 0.920 (18)1.988 (18)2.9025 (16)171.9 (15)
C4—H4⋯O3iii 0.952.503.410 (2)161
C11—H11B⋯N30.992.362.8373 (19)109
C20—H20A⋯O1iv 0.982.493.215 (2)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  Direct toxicity of nonsteroidal antiinflammatory drugs for renal medullary cells.

Authors:  G M Rocha; L F Michea; E M Peters; M Kirby; Y Xu; D R Ferguson; M B Burg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Prodrug designing of NSAIDs.

Authors:  Parmeshwari K Halen; Prashant R Murumkar; Rajani Giridhar; Mange Ram Yadav
Journal:  Mini Rev Med Chem       Date:  2009-01       Impact factor: 3.862

4.  Observation and experiment with the efficacy of drugs: a warning example from a cohort of nonsteroidal anti-inflammatory and ulcer-healing drug users.

Authors:  A D McMahon
Journal:  Am J Epidemiol       Date:  2001-09-15       Impact factor: 4.897

Review 5.  Time dependent risk of gastrointestinal complications induced by non-steroidal anti-inflammatory drug use: a consensus statement using a meta-analytic approach.

Authors:  F Richy; O Bruyere; O Ethgen; V Rabenda; G Bouvenot; M Audran; G Herrero-Beaumont; A Moore; R Eliakim; M Haim; J-Y Reginster
Journal:  Ann Rheum Dis       Date:  2004-07       Impact factor: 19.103

6.  Gastrointestinal damage associated with the use of nonsteroidal antiinflammatory drugs.

Authors:  M C Allison; A G Howatson; C J Torrance; F D Lee; R I Russell
Journal:  N Engl J Med       Date:  1992-09-10       Impact factor: 91.245

7.  N'-[(E)-Benzyl-idene]-2-(6-meth-oxy-naphthalen-2-yl)propano-hydrazide.

Authors:  Joel T Mague; Mehmet Akkurt; Shaaban K Mohamed; Mahmoud A A El-Remaily; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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