| Literature DB >> 24454088 |
Bao-Cheng Liu1, Shou-Jin Zhu1, Fa-Qian Liu1.
Abstract
The title salt, C9H11N2 (+)·NO3 (-), features a planar cation (r.m.s. for 11 non-H atoms = 0.016 Å). In the crystal, N-H⋯O hydrogen bonds link nitrate and benzimidazole ions into a three-dimensional network.Entities:
Year: 2013 PMID: 24454088 PMCID: PMC3884312 DOI: 10.1107/S1600536813027578
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N2+·NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3271 reflections |
| θ = 2.5–26.6° | |
| µ = 0.11 mm−1 | |
| β = 108.598 (9)° | Block, yellow |
| 0.29 × 0.27 × 0.22 mm | |
| Rigaku R-AXIS Spider diffractometer | 1617 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 26.0°, θmin = 2.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5401 measured reflections | 13 standard reflections every 0 reflections |
| 1973 independent reflections | intensity decay: none |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1973 reflections | Δρmax = 0.18 e Å−3 |
| 145 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.102 (10) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C6 | 0.3017 (3) | 0.52774 (14) | 0.13819 (18) | 0.0638 (5) | |
| H6A | 0.3096 | 0.5767 | 0.1965 | 0.077* | |
| C3 | 0.2734 (3) | 0.38091 (11) | −0.03709 (17) | 0.0545 (4) | |
| H3A | 0.2625 | 0.3319 | −0.0956 | 0.065* | |
| N3 | 0.9477 (2) | 0.33163 (9) | 0.55623 (14) | 0.0615 (4) | |
| C4 | 0.2174 (2) | 0.46728 (10) | −0.08774 (14) | 0.0451 (4) | |
| C1 | 0.4099 (4) | 0.27501 (17) | 0.1557 (2) | 0.0936 (8) | |
| H1A | 0.3917 | 0.2333 | 0.0816 | 0.140* | |
| H1B | 0.3287 | 0.2558 | 0.2102 | 0.140* | |
| H1C | 0.5506 | 0.2761 | 0.2104 | 0.140* | |
| C2 | 0.3452 (3) | 0.36885 (13) | 0.10052 (19) | 0.0613 (5) | |
| C8 | 0.4308 (4) | 0.4293 (2) | 0.3399 (2) | 0.1049 (9) | |
| H8A | 0.4287 | 0.4865 | 0.3839 | 0.157* | |
| H8B | 0.5670 | 0.4058 | 0.3678 | 0.157* | |
| H8C | 0.3432 | 0.3870 | 0.3647 | 0.157* | |
| C7 | 0.3576 (3) | 0.44249 (15) | 0.18821 (18) | 0.0645 (5) | |
| C5 | 0.2327 (2) | 0.53977 (10) | −0.00159 (17) | 0.0493 (4) | |
| N2 | 0.1683 (2) | 0.61491 (10) | −0.08221 (17) | 0.0609 (4) | |
| C9 | 0.1169 (3) | 0.58998 (12) | −0.20846 (19) | 0.0602 (5) | |
| H9A | 0.0678 | 0.6289 | −0.2824 | 0.072* | |
| N1 | 0.1439 (2) | 0.50169 (10) | −0.21736 (13) | 0.0519 (4) | |
| O1 | 0.9388 (3) | 0.31136 (10) | 0.66814 (13) | 0.0858 (5) | |
| O2 | 1.0253 (3) | 0.40438 (9) | 0.53833 (14) | 0.0857 (5) | |
| O3 | 0.8828 (3) | 0.27846 (9) | 0.45932 (13) | 0.0829 (5) | |
| H1 | 0.108 (3) | 0.4713 (15) | −0.297 (2) | 0.082 (7)* | |
| H2 | 0.156 (4) | 0.6760 (18) | −0.053 (2) | 0.097 (7)* |
| C6 | 0.0503 (9) | 0.0868 (13) | 0.0550 (10) | −0.0109 (9) | 0.0176 (7) | −0.0263 (9) |
| C3 | 0.0557 (9) | 0.0498 (9) | 0.0583 (9) | −0.0039 (7) | 0.0187 (7) | −0.0015 (7) |
| N3 | 0.0792 (10) | 0.0433 (7) | 0.0533 (8) | 0.0036 (7) | 0.0090 (7) | 0.0041 (6) |
| C4 | 0.0417 (8) | 0.0517 (8) | 0.0436 (7) | −0.0050 (6) | 0.0161 (6) | −0.0024 (6) |
| C1 | 0.0874 (16) | 0.0854 (15) | 0.0949 (16) | −0.0108 (12) | 0.0109 (12) | 0.0373 (12) |
| C2 | 0.0511 (9) | 0.0712 (11) | 0.0599 (10) | −0.0090 (8) | 0.0155 (7) | 0.0135 (8) |
| C8 | 0.0874 (16) | 0.175 (3) | 0.0469 (11) | −0.0045 (17) | 0.0142 (10) | 0.0111 (14) |
| C7 | 0.0479 (9) | 0.0968 (14) | 0.0472 (9) | −0.0077 (9) | 0.0128 (7) | 0.0073 (9) |
| C5 | 0.0413 (8) | 0.0518 (9) | 0.0559 (9) | −0.0042 (6) | 0.0172 (6) | −0.0079 (7) |
| N2 | 0.0529 (8) | 0.0488 (8) | 0.0779 (10) | 0.0012 (6) | 0.0163 (7) | −0.0064 (7) |
| C9 | 0.0499 (9) | 0.0584 (10) | 0.0699 (11) | 0.0022 (7) | 0.0156 (8) | 0.0138 (8) |
| N1 | 0.0517 (8) | 0.0601 (9) | 0.0442 (7) | −0.0023 (6) | 0.0157 (6) | −0.0004 (6) |
| O1 | 0.1216 (13) | 0.0780 (9) | 0.0593 (8) | −0.0232 (8) | 0.0309 (8) | −0.0002 (7) |
| O2 | 0.1434 (14) | 0.0470 (7) | 0.0653 (9) | −0.0202 (7) | 0.0315 (9) | 0.0006 (6) |
| O3 | 0.1287 (13) | 0.0498 (7) | 0.0549 (7) | −0.0080 (7) | 0.0078 (7) | −0.0012 (6) |
| C6—C7 | 1.364 (3) | C1—H1B | 0.9600 |
| C6—C5 | 1.386 (3) | C1—H1C | 0.9600 |
| C6—H6A | 0.9300 | C2—C7 | 1.399 (3) |
| C3—C2 | 1.366 (3) | C8—C7 | 1.505 (3) |
| C3—C4 | 1.381 (2) | C8—H8A | 0.9600 |
| C3—H3A | 0.9300 | C8—H8B | 0.9600 |
| N3—O1 | 1.2197 (19) | C8—H8C | 0.9600 |
| N3—O2 | 1.237 (2) | C5—N2 | 1.371 (2) |
| N3—O3 | 1.2393 (19) | N2—C9 | 1.296 (2) |
| C4—C5 | 1.373 (2) | N2—H2 | 0.96 (3) |
| C4—N1 | 1.374 (2) | C9—N1 | 1.318 (2) |
| C1—C2 | 1.505 (3) | C9—H9A | 0.9300 |
| C1—H1A | 0.9600 | N1—H1 | 0.90 (2) |
| C7—C6—C5 | 118.47 (16) | C7—C8—H8A | 109.5 |
| C7—C6—H6A | 120.8 | C7—C8—H8B | 109.5 |
| C5—C6—H6A | 120.8 | H8A—C8—H8B | 109.5 |
| C2—C3—C4 | 118.80 (16) | C7—C8—H8C | 109.5 |
| C2—C3—H3A | 120.6 | H8A—C8—H8C | 109.5 |
| C4—C3—H3A | 120.6 | H8B—C8—H8C | 109.5 |
| O1—N3—O2 | 120.70 (15) | C6—C7—C2 | 120.78 (17) |
| O1—N3—O3 | 120.23 (15) | C6—C7—C8 | 118.5 (2) |
| O2—N3—O3 | 119.06 (15) | C2—C7—C8 | 120.7 (2) |
| C5—C4—N1 | 106.25 (15) | N2—C5—C4 | 106.54 (15) |
| C5—C4—C3 | 120.73 (15) | N2—C5—C6 | 132.67 (16) |
| N1—C4—C3 | 133.01 (14) | C4—C5—C6 | 120.79 (16) |
| C2—C1—H1A | 109.5 | C9—N2—C5 | 108.69 (15) |
| C2—C1—H1B | 109.5 | C9—N2—H2 | 124.2 (14) |
| H1A—C1—H1B | 109.5 | C5—N2—H2 | 127.1 (14) |
| C2—C1—H1C | 109.5 | N2—C9—N1 | 110.46 (16) |
| H1A—C1—H1C | 109.5 | N2—C9—H9A | 124.8 |
| H1B—C1—H1C | 109.5 | N1—C9—H9A | 124.8 |
| C3—C2—C7 | 120.41 (18) | C9—N1—C4 | 108.06 (14) |
| C3—C2—C1 | 118.79 (19) | C9—N1—H1 | 123.2 (14) |
| C7—C2—C1 | 120.80 (18) | C4—N1—H1 | 128.6 (14) |
| C2—C3—C4—C5 | −0.2 (2) | C3—C4—C5—N2 | 179.37 (14) |
| C2—C3—C4—N1 | 179.02 (15) | N1—C4—C5—C6 | 179.55 (13) |
| C4—C3—C2—C7 | 1.3 (2) | C3—C4—C5—C6 | −1.0 (2) |
| C4—C3—C2—C1 | −178.89 (16) | C7—C6—C5—N2 | −179.34 (16) |
| C5—C6—C7—C2 | −0.1 (3) | C7—C6—C5—C4 | 1.2 (2) |
| C5—C6—C7—C8 | −179.48 (16) | C4—C5—N2—C9 | 0.16 (18) |
| C3—C2—C7—C6 | −1.1 (3) | C6—C5—N2—C9 | −179.36 (17) |
| C1—C2—C7—C6 | 179.06 (18) | C5—N2—C9—N1 | −0.22 (19) |
| C3—C2—C7—C8 | 178.23 (17) | N2—C9—N1—C4 | 0.19 (18) |
| C1—C2—C7—C8 | −1.6 (3) | C5—C4—N1—C9 | −0.09 (16) |
| N1—C4—C5—N2 | −0.04 (16) | C3—C4—N1—C9 | −179.40 (17) |
| H··· | ||||
| N2—H2···O1i | 0.96 (3) | 2.31 (3) | 3.043 (3) | 133.0 (15) |
| N2—H2···O3i | 0.96 (3) | 1.86 (3) | 2.797 (3) | 165 (2) |
| N1—H1···O1ii | 0.90 (3) | 2.60 (2) | 3.191 (3) | 123.8 (17) |
| N1—H1···O2ii | 0.90 (3) | 1.89 (2) | 2.797 (3) | 178 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O1i | 0.96 (3) | 2.31 (3) | 3.043 (3) | 133.0 (15) |
| N2—H2⋯O3i | 0.96 (3) | 1.86 (3) | 2.797 (3) | 165 (2) |
| N1—H1⋯O1ii | 0.90 (3) | 2.60 (2) | 3.191 (3) | 123.8 (17) |
| N1—H1⋯O2ii | 0.90 (3) | 1.89 (2) | 2.797 (3) | 178 (2) |
Symmetry codes: (i) ; (ii) .