Literature DB >> 21583189

Bis(5,6-dicarboxy-benzimidazolium) sulfate monohydrate.

Yue Cui1, Qian Gao, Chao-Yan Zhang, Ya-Bo Xie.   

Abstract

In the title compound, 2C(9)H(7)N(2)O(4) (+)·SO(4) (2-)·H(2)O, the sulfate S atom and the water O atom reside on a crystallographic twofold axis. In the crystal, the component species are linked by N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network structure. An intramol-ecular O-H⋯O link is seen in the cation.

Entities:  

Year:  2009        PMID: 21583189      PMCID: PMC2969668          DOI: 10.1107/S1600536809018182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure that contains a benzimidazole mol­ecule, see: Gao et al. (2008 ▶). For the pharmacokinetics of an anti­allergic benzimidazole derivative, see: Sakai et al. (1989 ▶). For the synthesis and chemoluminescence of an amino drivative, see: White & Matsuo (1967 ▶).

Experimental

Crystal data

2C9H7N2O4 +·SO4 2−·H2O M = 528.41 Orthorhombic, a = 14.691 (3) Å b = 7.7968 (17) Å c = 17.983 (4) Å V = 2059.8 (8) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.12 × 0.11 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.971, T max = 0.976 11525 measured reflections 2413 independent reflections 1994 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.138 S = 1.00 2413 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.40 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018182/si2172sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018182/si2172Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C9H7N2O4+·SO42·H2OF(000) = 1088
Mr = 528.41Dx = 1.704 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 2413 reflections
a = 14.691 (3) Åθ = 2.3–25.0°
b = 7.7968 (17) ŵ = 0.24 mm1
c = 17.983 (4) ÅT = 296 K
V = 2059.8 (8) Å3Block, colorless
Z = 40.12 × 0.11 × 0.10 mm
Bruker SMART CCD area-detector diffractometer2413 independent reflections
Radiation source: fine-focus sealed tube1994 reflections with I > 2σ(I)
graphiteRint = 0.060
φ and ω scansθmax = 27.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −17→16
Tmin = 0.971, Tmax = 0.976k = −9→9
11525 measured reflectionsl = −21→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0847P)2 + 0.8915P] where P = (Fo2 + 2Fc2)/3
2413 reflections(Δ/σ)max < 0.001
168 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.35417 (10)0.1890 (2)0.09502 (8)0.0418 (4)
H280.36850.19030.14080.050*
O20.22201 (11)0.2483 (3)0.15019 (8)0.0553 (5)
O30.00994 (12)0.3035 (2)0.08983 (10)0.0586 (5)
O40.08286 (11)0.05673 (19)0.07644 (9)0.0474 (4)
H210.04650.01720.10890.057*
N10.29633 (11)0.4817 (2)−0.16017 (8)0.0344 (4)
H250.35350.4982−0.17180.041*
N20.15053 (11)0.5073 (2)−0.17520 (9)0.0358 (4)
H220.09690.5355−0.19620.043*
C10.26786 (14)0.2354 (2)0.09487 (10)0.0339 (4)
C20.23266 (12)0.2806 (2)0.01950 (9)0.0280 (4)
C30.29283 (11)0.3365 (2)−0.03408 (10)0.0293 (4)
H3A0.35540.3271−0.02760.035*
C40.25595 (12)0.4077 (2)−0.09819 (9)0.0282 (4)
C50.23151 (14)0.5390 (3)−0.20452 (11)0.0381 (4)
H5A0.24130.5936−0.24980.046*
C60.16218 (12)0.4236 (2)−0.10814 (10)0.0295 (4)
C70.10081 (12)0.3636 (2)−0.05544 (10)0.0316 (4)
H7A0.03830.3721−0.06260.038*
C80.13689 (12)0.2909 (2)0.00784 (10)0.0301 (4)
C90.07088 (12)0.2201 (3)0.06351 (11)0.0345 (4)
S10.0000−0.14201 (8)0.25000.0295 (2)
O90.07896 (13)−0.2429 (2)0.22937 (9)0.0630 (6)
O11−0.02520 (10)−0.0310 (2)0.18688 (9)0.0533 (5)
O1W0.00000.3439 (3)0.25000.0540 (6)
H1WA−0.024 (5)0.266 (8)0.286 (3)0.20 (3)*
U11U22U33U12U13U23
O10.0398 (8)0.0540 (9)0.0318 (7)0.0075 (6)−0.0091 (6)0.0022 (6)
O20.0509 (9)0.0893 (13)0.0258 (7)0.0019 (9)0.0010 (6)−0.0032 (7)
O30.0511 (10)0.0602 (10)0.0645 (11)0.0225 (8)0.0302 (8)0.0198 (9)
O40.0501 (9)0.0412 (8)0.0510 (9)0.0022 (7)0.0229 (7)0.0079 (7)
N10.0301 (8)0.0445 (9)0.0285 (8)−0.0057 (7)0.0029 (6)0.0030 (6)
N20.0331 (8)0.0436 (9)0.0306 (8)−0.0038 (7)−0.0061 (6)0.0050 (7)
C10.0392 (10)0.0365 (10)0.0260 (9)−0.0010 (8)−0.0034 (7)−0.0017 (7)
C20.0283 (8)0.0305 (9)0.0253 (8)0.0027 (7)−0.0014 (6)−0.0028 (6)
C30.0239 (8)0.0355 (10)0.0284 (8)−0.0007 (7)−0.0010 (6)−0.0025 (7)
C40.0264 (8)0.0330 (9)0.0252 (8)−0.0035 (7)0.0010 (6)−0.0035 (7)
C50.0404 (10)0.0445 (11)0.0295 (9)−0.0061 (9)−0.0012 (8)0.0035 (8)
C60.0281 (8)0.0328 (9)0.0275 (8)−0.0020 (7)−0.0039 (6)−0.0003 (7)
C70.0222 (8)0.0381 (10)0.0345 (9)−0.0011 (7)0.0002 (7)0.0012 (7)
C80.0292 (8)0.0321 (9)0.0291 (9)0.0009 (7)0.0040 (7)−0.0014 (7)
C90.0287 (9)0.0426 (11)0.0323 (9)0.0032 (7)0.0055 (7)0.0038 (8)
S10.0309 (3)0.0334 (4)0.0243 (3)0.0000.0043 (2)0.000
O90.0814 (13)0.0702 (12)0.0374 (8)0.0449 (10)0.0205 (8)0.0090 (8)
O110.0300 (7)0.0781 (11)0.0517 (9)0.0056 (8)0.0054 (6)0.0308 (8)
O1W0.0597 (16)0.0487 (14)0.0538 (15)0.000−0.0195 (11)0.000
O1—C11.319 (2)C2—C81.425 (2)
O1—H280.8499C3—C41.389 (3)
O2—C11.205 (2)C3—H3A0.9300
O3—C91.204 (2)C4—C61.395 (3)
O4—C91.306 (3)C5—H5A0.9300
O4—H210.8496C6—C71.389 (3)
N1—C51.320 (3)C7—C81.377 (3)
N1—C41.388 (2)C7—H7A0.9300
N1—H250.8747C8—C91.499 (2)
N2—C51.325 (3)S1—O9i1.4498 (16)
N2—C61.382 (2)S1—O91.4498 (16)
N2—H220.9011S1—O11i1.4745 (15)
C1—C21.493 (2)S1—O111.4745 (15)
C2—C31.379 (2)O1W—H1WA0.95 (6)
C1—O1—H28103.7N1—C5—H5A124.9
C9—O4—H21113.0N2—C5—H5A124.9
C5—N1—C4108.51 (16)N2—C6—C7132.38 (17)
C5—N1—H25119.9N2—C6—C4106.03 (15)
C4—N1—H25131.5C7—C6—C4121.58 (17)
C5—N2—C6108.92 (16)C8—C7—C6116.90 (17)
C5—N2—H22124.9C8—C7—H7A121.6
C6—N2—H22126.1C6—C7—H7A121.6
O2—C1—O1123.95 (17)C7—C8—C2121.67 (16)
O2—C1—C2122.41 (18)C7—C8—C9117.03 (16)
O1—C1—C2113.55 (16)C2—C8—C9121.30 (16)
C3—C2—C8120.82 (16)O3—C9—O4123.86 (18)
C3—C2—C1119.15 (16)O3—C9—C8122.97 (18)
C8—C2—C1119.28 (16)O4—C9—C8113.02 (16)
C2—C3—C4117.14 (16)O9i—S1—O9114.29 (17)
C2—C3—H3A121.4O9i—S1—O11i108.80 (9)
C4—C3—H3A121.4O9—S1—O11i108.33 (10)
N1—C4—C3131.72 (17)O9i—S1—O11108.33 (10)
N1—C4—C6106.39 (15)O9—S1—O11108.80 (9)
C3—C4—C6121.81 (16)O11i—S1—O11108.15 (16)
N1—C5—N2110.14 (17)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3i0.96 (6)2.26 (5)2.9012 (11)123.6
O1W—H1WA···O11i0.96 (6)2.47 (6)3.1575 (16)128.4
O4—H21···O110.851.792.6330 (11)169
N2—H22···O1Wii0.901.962.8365 (10)163
N1—H25···O11iii0.881.822.6931 (12)175
O1—H28···O9iv0.851.842.6616 (11)161
C5—H5A···O2v0.932.203.098 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H22⋯O1Wii0.901.962.8365 (10)163
N1—H25⋯O11iii0.881.822.6931 (12)175
C5—H5A⋯O2v0.932.203.098 (3)162
O1—H28⋯O9iv0.851.842.6616 (11)161
O4—H21⋯O110.851.792.6330 (11)169
O1W—H1WA⋯O3i0.96 (6)2.26 (5)2.9012 (11)123.6
O1W—H1WA⋯O11i0.96 (6)2.47 (6)3.1575 (16)128.4

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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