| Literature DB >> 24454080 |
Mushtaq Ahmad1, Shahid Hameed2, M Nawaz Tahir3, Muhammad Anwar4, Muhammad Israr4.
Abstract
In the title compound, C12H9BrN4O, the dihedral angle between the aromatic rings is 12.16 (12)°. An intra-molecular N-H⋯N hydrogen bond closes an S(5) ring. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into C(6) chains propagating in [010]. Very weak aromatic π-π stacking [centroid-centroid separations = 3.9189 (15) and 3.9357 (15) Å] is also observed.Entities:
Year: 2013 PMID: 24454080 PMCID: PMC3884304 DOI: 10.1107/S1600536813027426
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9BrN4O | |
| Monoclinic, | Mo |
| Cell parameters from 1670 reflections | |
| θ = 1.5–26.3° | |
| µ = 3.43 mm−1 | |
| β = 104.379 (2)° | |
| Prism, colorless | |
| 0.34 × 0.25 × 0.23 mm |
| Bruker Kappa APEXII CCD diffractometer | 2415 independent reflections |
| Radiation source: fine-focus sealed tube | 1670 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.00 pixels mm-1 | θmax = 26.3°, θmin = 1.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 9373 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2415 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.62227 (2) | 0.43755 (5) | 0.23030 (2) | 0.07124 (14) | |
| O1 | 0.34544 (12) | 0.8178 (3) | −0.01354 (6) | 0.0572 (5) | |
| N1 | 0.15137 (16) | 0.8142 (4) | −0.15404 (8) | 0.0650 (6) | |
| N2 | 0.23320 (14) | 0.4402 (3) | −0.10560 (7) | 0.0489 (5) | |
| N3 | 0.35102 (14) | 0.4532 (3) | −0.01526 (7) | 0.0501 (5) | |
| H3A | 0.3313 | 0.3401 | −0.0328 | 0.060* | |
| N4 | 0.41296 (14) | 0.4300 (3) | 0.03159 (7) | 0.0470 (5) | |
| C1 | 0.25220 (16) | 0.6348 (4) | −0.08500 (8) | 0.0421 (5) | |
| C2 | 0.21160 (18) | 0.8185 (5) | −0.10872 (9) | 0.0565 (7) | |
| H2 | 0.2266 | 0.9502 | −0.0927 | 0.068* | |
| C3 | 0.13278 (19) | 0.6199 (5) | −0.17444 (10) | 0.0620 (8) | |
| H3 | 0.0911 | 0.6087 | −0.2060 | 0.074* | |
| C4 | 0.17254 (18) | 0.4358 (5) | −0.15084 (9) | 0.0567 (7) | |
| H4 | 0.1568 | 0.3041 | −0.1668 | 0.068* | |
| C5 | 0.32089 (16) | 0.6472 (4) | −0.03412 (8) | 0.0432 (6) | |
| C6 | 0.43789 (17) | 0.2363 (4) | 0.04277 (8) | 0.0488 (6) | |
| H6 | 0.4144 | 0.1287 | 0.0195 | 0.059* | |
| C7 | 0.50180 (16) | 0.1759 (4) | 0.09064 (8) | 0.0429 (5) | |
| C8 | 0.52751 (15) | 0.3190 (4) | 0.13043 (8) | 0.0441 (6) | |
| H8 | 0.5043 | 0.4593 | 0.1274 | 0.053* | |
| C9 | 0.58834 (16) | 0.2486 (4) | 0.17454 (8) | 0.0457 (6) | |
| C10 | 0.62372 (18) | 0.0415 (4) | 0.17990 (10) | 0.0557 (7) | |
| H10 | 0.6649 | −0.0027 | 0.2098 | 0.067* | |
| C11 | 0.59711 (19) | −0.0986 (4) | 0.14028 (11) | 0.0599 (7) | |
| H11 | 0.6210 | −0.2383 | 0.1434 | 0.072* | |
| C12 | 0.53564 (19) | −0.0348 (4) | 0.09608 (10) | 0.0538 (6) | |
| H12 | 0.5167 | −0.1322 | 0.0699 | 0.065* |
| Br1 | 0.0841 (2) | 0.0729 (2) | 0.04238 (16) | −0.00330 (16) | −0.01146 (13) | −0.00346 (13) |
| O1 | 0.0665 (11) | 0.0511 (11) | 0.0501 (10) | −0.0134 (9) | 0.0073 (8) | −0.0144 (8) |
| N1 | 0.0630 (15) | 0.0746 (17) | 0.0523 (13) | 0.0077 (13) | 0.0045 (11) | 0.0107 (12) |
| N2 | 0.0511 (11) | 0.0532 (13) | 0.0392 (10) | −0.0028 (11) | 0.0048 (9) | −0.0096 (10) |
| N3 | 0.0553 (12) | 0.0501 (13) | 0.0367 (10) | −0.0022 (11) | −0.0042 (9) | −0.0109 (9) |
| N4 | 0.0491 (11) | 0.0522 (13) | 0.0345 (9) | −0.0025 (10) | 0.0004 (8) | −0.0063 (9) |
| C1 | 0.0402 (13) | 0.0502 (15) | 0.0365 (11) | −0.0016 (11) | 0.0110 (10) | −0.0043 (10) |
| C2 | 0.0604 (16) | 0.0557 (17) | 0.0519 (14) | 0.0006 (14) | 0.0110 (12) | −0.0003 (13) |
| C3 | 0.0508 (16) | 0.089 (2) | 0.0411 (13) | −0.0007 (15) | 0.0011 (12) | 0.0039 (14) |
| C4 | 0.0538 (15) | 0.0694 (19) | 0.0416 (13) | −0.0048 (14) | 0.0018 (11) | −0.0103 (13) |
| C5 | 0.0432 (13) | 0.0496 (15) | 0.0375 (12) | −0.0041 (12) | 0.0113 (10) | −0.0053 (11) |
| C6 | 0.0544 (15) | 0.0505 (16) | 0.0385 (12) | −0.0080 (13) | 0.0058 (10) | −0.0083 (11) |
| C7 | 0.0425 (13) | 0.0453 (15) | 0.0408 (12) | −0.0035 (11) | 0.0102 (10) | −0.0001 (10) |
| C8 | 0.0458 (13) | 0.0422 (14) | 0.0412 (12) | −0.0002 (11) | 0.0048 (10) | 0.0016 (11) |
| C9 | 0.0432 (13) | 0.0499 (15) | 0.0418 (12) | −0.0046 (12) | 0.0064 (10) | 0.0019 (11) |
| C10 | 0.0482 (14) | 0.0611 (18) | 0.0537 (15) | 0.0025 (13) | 0.0049 (11) | 0.0138 (13) |
| C11 | 0.0620 (17) | 0.0510 (17) | 0.0680 (17) | 0.0106 (13) | 0.0183 (14) | 0.0095 (13) |
| C12 | 0.0620 (16) | 0.0472 (15) | 0.0547 (15) | 0.0002 (13) | 0.0195 (13) | −0.0038 (12) |
| Br1—C9 | 1.901 (2) | C3—H3 | 0.9300 |
| O1—C5 | 1.213 (3) | C4—H4 | 0.9300 |
| N1—C3 | 1.331 (4) | C6—C7 | 1.459 (3) |
| N1—C2 | 1.334 (3) | C6—H6 | 0.9300 |
| N2—C4 | 1.335 (3) | C7—C8 | 1.390 (3) |
| N2—C1 | 1.335 (3) | C7—C12 | 1.392 (4) |
| N3—C5 | 1.341 (3) | C8—C9 | 1.383 (3) |
| N3—N4 | 1.384 (2) | C8—H8 | 0.9300 |
| N3—H3A | 0.8600 | C9—C10 | 1.378 (4) |
| N4—C6 | 1.272 (3) | C10—C11 | 1.376 (4) |
| C1—C2 | 1.372 (3) | C10—H10 | 0.9300 |
| C1—C5 | 1.506 (3) | C11—C12 | 1.376 (4) |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.369 (4) | C12—H12 | 0.9300 |
| C3—N1—C2 | 115.5 (2) | N4—C6—C7 | 122.6 (2) |
| C4—N2—C1 | 115.7 (2) | N4—C6—H6 | 118.7 |
| C5—N3—N4 | 121.85 (19) | C7—C6—H6 | 118.7 |
| C5—N3—H3A | 119.1 | C8—C7—C12 | 119.9 (2) |
| N4—N3—H3A | 119.1 | C8—C7—C6 | 122.4 (2) |
| C6—N4—N3 | 113.77 (18) | C12—C7—C6 | 117.7 (2) |
| N2—C1—C2 | 122.1 (2) | C9—C8—C7 | 118.7 (2) |
| N2—C1—C5 | 117.5 (2) | C9—C8—H8 | 120.7 |
| C2—C1—C5 | 120.4 (2) | C7—C8—H8 | 120.7 |
| N1—C2—C1 | 122.1 (3) | C10—C9—C8 | 121.8 (2) |
| N1—C2—H2 | 118.9 | C10—C9—Br1 | 118.40 (18) |
| C1—C2—H2 | 118.9 | C8—C9—Br1 | 119.78 (19) |
| N1—C3—C4 | 122.7 (2) | C11—C10—C9 | 118.9 (2) |
| N1—C3—H3 | 118.7 | C11—C10—H10 | 120.6 |
| C4—C3—H3 | 118.7 | C9—C10—H10 | 120.6 |
| N2—C4—C3 | 121.8 (3) | C10—C11—C12 | 120.9 (2) |
| N2—C4—H4 | 119.1 | C10—C11—H11 | 119.6 |
| C3—C4—H4 | 119.1 | C12—C11—H11 | 119.6 |
| O1—C5—N3 | 125.1 (2) | C11—C12—C7 | 119.9 (2) |
| O1—C5—C1 | 121.9 (2) | C11—C12—H12 | 120.1 |
| N3—C5—C1 | 113.0 (2) | C7—C12—H12 | 120.1 |
| C5—N3—N4—C6 | −176.9 (2) | C2—C1—C5—N3 | 177.4 (2) |
| C4—N2—C1—C2 | 0.3 (4) | N3—N4—C6—C7 | −179.2 (2) |
| C4—N2—C1—C5 | −179.6 (2) | N4—C6—C7—C8 | 10.8 (4) |
| C3—N1—C2—C1 | 0.5 (4) | N4—C6—C7—C12 | −170.6 (2) |
| N2—C1—C2—N1 | −0.7 (4) | C12—C7—C8—C9 | 1.3 (3) |
| C5—C1—C2—N1 | 179.2 (2) | C6—C7—C8—C9 | 179.9 (2) |
| C2—N1—C3—C4 | −0.1 (4) | C7—C8—C9—C10 | 0.0 (4) |
| C1—N2—C4—C3 | 0.1 (4) | C7—C8—C9—Br1 | −178.32 (17) |
| N1—C3—C4—N2 | −0.3 (4) | C8—C9—C10—C11 | −0.4 (4) |
| N4—N3—C5—O1 | 1.9 (4) | Br1—C9—C10—C11 | 177.9 (2) |
| N4—N3—C5—C1 | −178.7 (2) | C9—C10—C11—C12 | −0.5 (4) |
| N2—C1—C5—O1 | 176.8 (2) | C10—C11—C12—C7 | 1.8 (4) |
| C2—C1—C5—O1 | −3.1 (4) | C8—C7—C12—C11 | −2.3 (4) |
| N2—C1—C5—N3 | −2.7 (3) | C6—C7—C12—C11 | 179.1 (2) |
| H··· | ||||
| N3—H3 | 0.86 | 2.24 | 2.646 (3) | 109 |
| C6—H6···O1i | 0.93 | 2.26 | 3.150 (3) | 160 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.24 | 2.646 (3) | 109 |
| C6—H6⋯O1i | 0.93 | 2.26 | 3.150 (3) | 160 |
Symmetry code: (i) .