Literature DB >> 24454080

N'-[(E)-3-Bromo-benzyl-idene]pyrazine-2-carbohydrazide.

Mushtaq Ahmad1, Shahid Hameed2, M Nawaz Tahir3, Muhammad Anwar4, Muhammad Israr4.   

Abstract

In the title compound, C12H9BrN4O, the dihedral angle between the aromatic rings is 12.16 (12)°. An intra-molecular N-H⋯N hydrogen bond closes an S(5) ring. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into C(6) chains propagating in [010]. Very weak aromatic π-π stacking [centroid-centroid separations = 3.9189 (15) and 3.9357 (15) Å] is also observed.

Entities:  

Year:  2013        PMID: 24454080      PMCID: PMC3884304          DOI: 10.1107/S1600536813027426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hameed et al. (2013a ▶,b ▶).

Experimental

Crystal data

C12H9BrN4O M = 305.14 Monoclinic, a = 14.4115 (8) Å b = 6.2128 (3) Å c = 27.5992 (15) Å β = 104.379 (2)° V = 2393.7 (2) Å3 Z = 8 Mo Kα radiation μ = 3.43 mm−1 T = 296 K 0.34 × 0.25 × 0.23 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.389, T max = 0.506 9373 measured reflections 2415 independent reflections 1670 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.02 2415 reflections 163 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813027426/hb7147sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027426/hb7147Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027426/hb7147Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9BrN4OF(000) = 1216
Mr = 305.14Dx = 1.693 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 14.4115 (8) ÅCell parameters from 1670 reflections
b = 6.2128 (3) Åθ = 1.5–26.3°
c = 27.5992 (15) ŵ = 3.43 mm1
β = 104.379 (2)°T = 296 K
V = 2393.7 (2) Å3Prism, colorless
Z = 80.34 × 0.25 × 0.23 mm
Bruker Kappa APEXII CCD diffractometer2415 independent reflections
Radiation source: fine-focus sealed tube1670 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 8.00 pixels mm-1θmax = 26.3°, θmin = 1.5°
ω scansh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −5→7
Tmin = 0.389, Tmax = 0.506l = −34→34
9373 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0348P)2 + 1.0725P] where P = (Fo2 + 2Fc2)/3
2415 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.62227 (2)0.43755 (5)0.23030 (2)0.07124 (14)
O10.34544 (12)0.8178 (3)−0.01354 (6)0.0572 (5)
N10.15137 (16)0.8142 (4)−0.15404 (8)0.0650 (6)
N20.23320 (14)0.4402 (3)−0.10560 (7)0.0489 (5)
N30.35102 (14)0.4532 (3)−0.01526 (7)0.0501 (5)
H3A0.33130.3401−0.03280.060*
N40.41296 (14)0.4300 (3)0.03159 (7)0.0470 (5)
C10.25220 (16)0.6348 (4)−0.08500 (8)0.0421 (5)
C20.21160 (18)0.8185 (5)−0.10872 (9)0.0565 (7)
H20.22660.9502−0.09270.068*
C30.13278 (19)0.6199 (5)−0.17444 (10)0.0620 (8)
H30.09110.6087−0.20600.074*
C40.17254 (18)0.4358 (5)−0.15084 (9)0.0567 (7)
H40.15680.3041−0.16680.068*
C50.32089 (16)0.6472 (4)−0.03412 (8)0.0432 (6)
C60.43789 (17)0.2363 (4)0.04277 (8)0.0488 (6)
H60.41440.12870.01950.059*
C70.50180 (16)0.1759 (4)0.09064 (8)0.0429 (5)
C80.52751 (15)0.3190 (4)0.13043 (8)0.0441 (6)
H80.50430.45930.12740.053*
C90.58834 (16)0.2486 (4)0.17454 (8)0.0457 (6)
C100.62372 (18)0.0415 (4)0.17990 (10)0.0557 (7)
H100.6649−0.00270.20980.067*
C110.59711 (19)−0.0986 (4)0.14028 (11)0.0599 (7)
H110.6210−0.23830.14340.072*
C120.53564 (19)−0.0348 (4)0.09608 (10)0.0538 (6)
H120.5167−0.13220.06990.065*
U11U22U33U12U13U23
Br10.0841 (2)0.0729 (2)0.04238 (16)−0.00330 (16)−0.01146 (13)−0.00346 (13)
O10.0665 (11)0.0511 (11)0.0501 (10)−0.0134 (9)0.0073 (8)−0.0144 (8)
N10.0630 (15)0.0746 (17)0.0523 (13)0.0077 (13)0.0045 (11)0.0107 (12)
N20.0511 (11)0.0532 (13)0.0392 (10)−0.0028 (11)0.0048 (9)−0.0096 (10)
N30.0553 (12)0.0501 (13)0.0367 (10)−0.0022 (11)−0.0042 (9)−0.0109 (9)
N40.0491 (11)0.0522 (13)0.0345 (9)−0.0025 (10)0.0004 (8)−0.0063 (9)
C10.0402 (13)0.0502 (15)0.0365 (11)−0.0016 (11)0.0110 (10)−0.0043 (10)
C20.0604 (16)0.0557 (17)0.0519 (14)0.0006 (14)0.0110 (12)−0.0003 (13)
C30.0508 (16)0.089 (2)0.0411 (13)−0.0007 (15)0.0011 (12)0.0039 (14)
C40.0538 (15)0.0694 (19)0.0416 (13)−0.0048 (14)0.0018 (11)−0.0103 (13)
C50.0432 (13)0.0496 (15)0.0375 (12)−0.0041 (12)0.0113 (10)−0.0053 (11)
C60.0544 (15)0.0505 (16)0.0385 (12)−0.0080 (13)0.0058 (10)−0.0083 (11)
C70.0425 (13)0.0453 (15)0.0408 (12)−0.0035 (11)0.0102 (10)−0.0001 (10)
C80.0458 (13)0.0422 (14)0.0412 (12)−0.0002 (11)0.0048 (10)0.0016 (11)
C90.0432 (13)0.0499 (15)0.0418 (12)−0.0046 (12)0.0064 (10)0.0019 (11)
C100.0482 (14)0.0611 (18)0.0537 (15)0.0025 (13)0.0049 (11)0.0138 (13)
C110.0620 (17)0.0510 (17)0.0680 (17)0.0106 (13)0.0183 (14)0.0095 (13)
C120.0620 (16)0.0472 (15)0.0547 (15)0.0002 (13)0.0195 (13)−0.0038 (12)
Br1—C91.901 (2)C3—H30.9300
O1—C51.213 (3)C4—H40.9300
N1—C31.331 (4)C6—C71.459 (3)
N1—C21.334 (3)C6—H60.9300
N2—C41.335 (3)C7—C81.390 (3)
N2—C11.335 (3)C7—C121.392 (4)
N3—C51.341 (3)C8—C91.383 (3)
N3—N41.384 (2)C8—H80.9300
N3—H3A0.8600C9—C101.378 (4)
N4—C61.272 (3)C10—C111.376 (4)
C1—C21.372 (3)C10—H100.9300
C1—C51.506 (3)C11—C121.376 (4)
C2—H20.9300C11—H110.9300
C3—C41.369 (4)C12—H120.9300
C3—N1—C2115.5 (2)N4—C6—C7122.6 (2)
C4—N2—C1115.7 (2)N4—C6—H6118.7
C5—N3—N4121.85 (19)C7—C6—H6118.7
C5—N3—H3A119.1C8—C7—C12119.9 (2)
N4—N3—H3A119.1C8—C7—C6122.4 (2)
C6—N4—N3113.77 (18)C12—C7—C6117.7 (2)
N2—C1—C2122.1 (2)C9—C8—C7118.7 (2)
N2—C1—C5117.5 (2)C9—C8—H8120.7
C2—C1—C5120.4 (2)C7—C8—H8120.7
N1—C2—C1122.1 (3)C10—C9—C8121.8 (2)
N1—C2—H2118.9C10—C9—Br1118.40 (18)
C1—C2—H2118.9C8—C9—Br1119.78 (19)
N1—C3—C4122.7 (2)C11—C10—C9118.9 (2)
N1—C3—H3118.7C11—C10—H10120.6
C4—C3—H3118.7C9—C10—H10120.6
N2—C4—C3121.8 (3)C10—C11—C12120.9 (2)
N2—C4—H4119.1C10—C11—H11119.6
C3—C4—H4119.1C12—C11—H11119.6
O1—C5—N3125.1 (2)C11—C12—C7119.9 (2)
O1—C5—C1121.9 (2)C11—C12—H12120.1
N3—C5—C1113.0 (2)C7—C12—H12120.1
C5—N3—N4—C6−176.9 (2)C2—C1—C5—N3177.4 (2)
C4—N2—C1—C20.3 (4)N3—N4—C6—C7−179.2 (2)
C4—N2—C1—C5−179.6 (2)N4—C6—C7—C810.8 (4)
C3—N1—C2—C10.5 (4)N4—C6—C7—C12−170.6 (2)
N2—C1—C2—N1−0.7 (4)C12—C7—C8—C91.3 (3)
C5—C1—C2—N1179.2 (2)C6—C7—C8—C9179.9 (2)
C2—N1—C3—C4−0.1 (4)C7—C8—C9—C100.0 (4)
C1—N2—C4—C30.1 (4)C7—C8—C9—Br1−178.32 (17)
N1—C3—C4—N2−0.3 (4)C8—C9—C10—C11−0.4 (4)
N4—N3—C5—O11.9 (4)Br1—C9—C10—C11177.9 (2)
N4—N3—C5—C1−178.7 (2)C9—C10—C11—C12−0.5 (4)
N2—C1—C5—O1176.8 (2)C10—C11—C12—C71.8 (4)
C2—C1—C5—O1−3.1 (4)C8—C7—C12—C11−2.3 (4)
N2—C1—C5—N3−2.7 (3)C6—C7—C12—C11179.1 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N20.862.242.646 (3)109
C6—H6···O1i0.932.263.150 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯N20.862.242.646 (3)109
C6—H6⋯O1i 0.932.263.150 (3)160

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

3.  N'-[(E)-4-Bromo-benzyl-idene]pyrazine-2-carbohydrazide.

Authors:  Shahid Hameed; Mushtaq Ahmad; M Nawaz Tahir; Muhammad Abdullah Shah; Hazoor Ahmad Shad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-22

4.  N'-[(E)-1-(2-Hy-droxy-phen-yl)ethyl-idene]pyrazine-2-carbohydrazide.

Authors:  Shahid Hameed; Mushtaq Ahmad; M Nawaz Tahir; Muhammad Israr; Muhammad Anwar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-14
  4 in total

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