Literature DB >> 24427054

N'-[(E)-1-(2-Hy-droxy-phen-yl)ethyl-idene]pyrazine-2-carbohydrazide.

Shahid Hameed1, Mushtaq Ahmad2, M Nawaz Tahir3, Muhammad Israr4, Muhammad Anwar4.   

Abstract

The title compound, C13H12N4O2, crystallized with two independent mol-ecules (A and B) in the asymmetric unit. Mol-ecule B is planar to within 0.044 (3) Å for all non-H atoms, while mol-ecule A is slightly twisted, with a dihedral angle of 6.29 (4)° between the mean planes of the pyrazine-2-carbohydrazide and 1-(2-hy-droxy-phen-yl)ethanone moieties (r.m.s. deviations = 0.0348 and 0.0428 Å, respectively). S(5) and S(6) ring motifs are formed in both mol-ecules due to the presence of intra-molecular O-H⋯N and N-H⋯N hydrogen bonds. In the crystal, mol-ecules A and B are linked by a C-H⋯O hydrogen bond. They stack along the a-axis direction, forming columns with π-π inter-actions involving inversion-related pyrazine and benzene rings [centroid-centroid distances = 3.5489 (13)-3.8513 (16) Å].

Entities:  

Year:  2013        PMID: 24427054      PMCID: PMC3884444          DOI: 10.1107/S1600536813022137

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure and other studies, see: Hameed et al. (2013 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H12N4O2 M = 256.27 Triclinic, a = 7.1767 (7) Å b = 10.1743 (10) Å c = 17.1150 (17) Å α = 86.172 (3)° β = 85.275 (2)° γ = 80.963 (4)° V = 1228.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.28 × 0.23 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.973, T max = 0.981 19042 measured reflections 4821 independent reflections 2608 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.138 S = 1.00 4821 reflections 361 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813022137/su2634sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813022137/su2634Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813022137/su2634Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N4O2Z = 4
Mr = 256.27F(000) = 536
Triclinic, P1Dx = 1.386 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1767 (7) ÅCell parameters from 2608 reflections
b = 10.1743 (10) Åθ = 1.2–26.0°
c = 17.1150 (17) ŵ = 0.10 mm1
α = 86.172 (3)°T = 296 K
β = 85.275 (2)°Prism, colourless
γ = 80.963 (4)°0.28 × 0.23 × 0.20 mm
V = 1228.2 (2) Å3
Bruker Kappa APEXII CCD diffractometer4821 independent reflections
Radiation source: fine-focus sealed tube2608 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
Detector resolution: 8.00 pixels mm-1θmax = 26.0°, θmin = 1.2°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→12
Tmin = 0.973, Tmax = 0.981l = −21→21
19042 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0537P)2 + 0.2363P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4821 reflectionsΔρmax = 0.23 e Å3
361 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0083 (12)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4150 (3)0.07549 (16)−0.16151 (9)0.0602 (7)
O20.2080 (2)−0.19271 (16)−0.05633 (10)0.0582 (6)
N10.2781 (2)0.04641 (18)−0.02111 (10)0.0372 (6)
N20.2155 (3)−0.04221 (18)0.03446 (11)0.0398 (7)
N30.0878 (2)−0.20255 (18)0.14825 (12)0.0456 (7)
N40.0423 (3)−0.46305 (19)0.11955 (14)0.0545 (8)
C10.4198 (3)0.2026 (2)−0.14404 (14)0.0421 (8)
C20.4732 (3)0.2888 (3)−0.20396 (15)0.0561 (10)
C30.4803 (3)0.4192 (3)−0.19149 (17)0.0604 (11)
C40.4368 (3)0.4658 (2)−0.11752 (17)0.0560 (10)
C50.3875 (3)0.3803 (2)−0.05687 (14)0.0448 (8)
C60.3735 (3)0.2475 (2)−0.06741 (13)0.0358 (7)
C70.3094 (3)0.1610 (2)−0.00190 (12)0.0352 (7)
C80.2827 (3)0.2063 (2)0.08019 (13)0.0515 (9)
C90.1834 (3)−0.1606 (2)0.01156 (14)0.0382 (8)
C100.1186 (3)−0.2501 (2)0.07671 (13)0.0371 (8)
C110.0343 (3)−0.2871 (3)0.20495 (16)0.0561 (10)
C120.0136 (3)−0.4158 (3)0.19042 (17)0.0573 (10)
C130.0928 (3)−0.3772 (2)0.06276 (15)0.0469 (9)
O30.2432 (3)0.48626 (18)0.34993 (10)0.0754 (8)
O40.1729 (3)0.7739 (2)0.48091 (12)0.0870 (9)
N50.2460 (3)0.5031 (2)0.49687 (11)0.0491 (7)
N60.2206 (3)0.5847 (2)0.55841 (12)0.0557 (8)
N70.1834 (3)0.7165 (2)0.68710 (12)0.0550 (8)
N80.0968 (3)0.9941 (2)0.68391 (16)0.0754 (10)
C140.2858 (3)0.3535 (3)0.36491 (14)0.0500 (9)
C150.3115 (4)0.2738 (3)0.30127 (15)0.0617 (11)
C160.3510 (4)0.1389 (3)0.31072 (17)0.0671 (11)
C170.3662 (4)0.0795 (3)0.38440 (19)0.0747 (11)
C180.3421 (4)0.1569 (3)0.44851 (16)0.0682 (11)
C190.3018 (3)0.2958 (2)0.44095 (13)0.0454 (8)
C200.2773 (3)0.3760 (3)0.51033 (13)0.0496 (9)
C210.2897 (7)0.3111 (4)0.5907 (2)0.104 (2)
C220.1843 (4)0.7184 (3)0.54528 (16)0.0556 (10)
C230.1605 (3)0.7897 (3)0.62001 (15)0.0502 (9)
C240.1623 (4)0.7838 (3)0.75194 (15)0.0633 (10)
C250.1216 (4)0.9200 (3)0.74989 (18)0.0689 (11)
C260.1158 (4)0.9267 (3)0.61878 (17)0.0693 (11)
H10.368900.03550−0.123400.0900*
H20.505200.25780−0.253900.0670*
H2A0.202 (3)−0.031 (2)0.0805 (13)0.0480*
H30.514500.47650−0.233000.0720*
H40.440800.55450−0.108800.0670*
H50.362500.41190−0.006800.0540*
H8A0.272200.131100.116400.0770*
H8B0.169500.270200.085700.0770*
H8C0.389400.246600.091100.0770*
H110.01000−0.258900.255900.0670*
H12−0.02200−0.471800.232300.0690*
H130.11150−0.404200.011500.0560*
H3A0.236900.524400.391000.1130*
H60.234 (4)0.557 (3)0.6029 (15)0.0670*
H150.301400.313400.250900.0740*
H160.367600.087200.267200.0810*
H170.39280−0.012800.391200.0900*
H180.353000.115400.498400.0820*
H21A0.250 (6)0.367 (4)0.628 (3)0.1560*
H21B0.409 (6)0.269 (4)0.598 (2)0.1560*
H21C0.210 (6)0.246 (4)0.597 (2)0.1560*
H240.175700.737000.800200.0760*
H250.111000.962300.796900.0820*
H260.098300.973800.570800.0830*
U11U22U33U12U13U23
O10.0827 (13)0.0529 (11)0.0456 (11)−0.0117 (9)0.0008 (9)−0.0108 (9)
O20.0818 (12)0.0506 (10)0.0459 (11)−0.0196 (9)−0.0032 (9)−0.0089 (9)
N10.0369 (10)0.0324 (10)0.0419 (11)−0.0046 (8)−0.0035 (8)0.0004 (9)
N20.0458 (11)0.0354 (11)0.0388 (12)−0.0082 (8)−0.0029 (9)−0.0019 (10)
N30.0471 (11)0.0425 (12)0.0472 (13)−0.0096 (9)−0.0004 (9)−0.0001 (10)
N40.0479 (12)0.0366 (12)0.0775 (17)−0.0067 (9)−0.0032 (11)0.0063 (12)
C10.0404 (13)0.0423 (14)0.0440 (15)−0.0061 (10)−0.0073 (10)−0.0003 (12)
C20.0533 (16)0.0713 (19)0.0426 (16)−0.0109 (13)−0.0040 (12)0.0079 (14)
C30.0508 (16)0.066 (2)0.066 (2)−0.0227 (13)−0.0113 (14)0.0253 (16)
C40.0527 (15)0.0438 (15)0.075 (2)−0.0178 (12)−0.0159 (14)0.0102 (15)
C50.0430 (13)0.0397 (14)0.0530 (16)−0.0082 (10)−0.0080 (11)−0.0020 (12)
C60.0310 (11)0.0341 (13)0.0418 (14)−0.0024 (9)−0.0072 (9)0.0012 (10)
C70.0321 (11)0.0322 (13)0.0409 (14)−0.0008 (9)−0.0061 (9)−0.0049 (10)
C80.0696 (16)0.0409 (14)0.0450 (15)−0.0124 (12)−0.0007 (12)−0.0045 (12)
C90.0372 (12)0.0332 (13)0.0449 (15)−0.0032 (10)−0.0080 (10)−0.0054 (11)
C100.0305 (11)0.0331 (13)0.0468 (15)−0.0021 (9)−0.0048 (10)−0.0005 (11)
C110.0584 (16)0.0580 (17)0.0517 (17)−0.0135 (13)0.0022 (12)0.0015 (14)
C120.0470 (15)0.0517 (17)0.071 (2)−0.0116 (12)0.0003 (13)0.0166 (15)
C130.0451 (14)0.0353 (14)0.0600 (17)−0.0040 (11)−0.0044 (12)−0.0044 (13)
O30.1333 (18)0.0556 (12)0.0381 (11)−0.0212 (11)0.0008 (11)−0.0001 (9)
O40.148 (2)0.0666 (13)0.0462 (13)−0.0209 (13)−0.0017 (12)0.0016 (11)
N50.0622 (13)0.0506 (13)0.0357 (12)−0.0122 (10)0.0009 (9)−0.0085 (10)
N60.0763 (15)0.0575 (15)0.0338 (12)−0.0110 (11)−0.0004 (11)−0.0090 (12)
N70.0584 (13)0.0605 (14)0.0467 (14)−0.0059 (10)−0.0033 (10)−0.0146 (12)
N80.0934 (19)0.0602 (16)0.0776 (19)−0.0186 (13)−0.0074 (15)−0.0238 (15)
C140.0542 (15)0.0568 (17)0.0399 (15)−0.0139 (12)0.0040 (11)−0.0066 (13)
C150.0750 (19)0.071 (2)0.0413 (16)−0.0182 (15)0.0036 (13)−0.0133 (14)
C160.0650 (18)0.080 (2)0.058 (2)−0.0068 (15)−0.0027 (14)−0.0279 (17)
C170.092 (2)0.0533 (17)0.077 (2)0.0073 (15)−0.0161 (17)−0.0223 (17)
C180.087 (2)0.0600 (19)0.0557 (18)−0.0001 (15)−0.0147 (15)−0.0041 (15)
C190.0470 (14)0.0497 (15)0.0397 (15)−0.0068 (11)−0.0023 (11)−0.0055 (12)
C200.0567 (15)0.0554 (17)0.0361 (14)−0.0074 (12)−0.0025 (11)−0.0026 (12)
C210.194 (5)0.072 (3)0.0387 (19)0.002 (3)−0.011 (2)0.0014 (17)
C220.0675 (17)0.0532 (18)0.0481 (18)−0.0152 (13)−0.0005 (13)−0.0078 (14)
C230.0532 (15)0.0532 (16)0.0468 (17)−0.0140 (12)−0.0013 (12)−0.0101 (13)
C240.0668 (17)0.075 (2)0.0491 (17)−0.0044 (14)−0.0086 (13)−0.0206 (15)
C250.0684 (19)0.076 (2)0.066 (2)−0.0119 (16)−0.0047 (15)−0.0304 (18)
C260.091 (2)0.0570 (19)0.063 (2)−0.0200 (15)−0.0050 (15)−0.0071 (16)
O1—C11.353 (3)C11—C121.382 (4)
O2—C91.219 (3)C2—H20.9300
O1—H10.8200C3—H30.9300
O3—C141.349 (3)C4—H40.9300
O4—C221.207 (3)C5—H50.9300
O3—H3A0.8200C8—H8B0.9600
N1—N21.364 (3)C8—H8C0.9600
N1—C71.290 (3)C8—H8A0.9600
N2—C91.350 (3)C11—H110.9300
N3—C111.327 (3)C12—H120.9300
N3—C101.335 (3)C13—H130.9300
N4—C131.329 (3)C14—C151.384 (4)
N4—C121.323 (4)C14—C191.398 (3)
N2—H2A0.80 (2)C15—C161.359 (4)
N5—N61.367 (3)C16—C171.367 (4)
N5—C201.286 (4)C17—C181.377 (4)
N6—C221.351 (4)C18—C191.397 (4)
N7—C241.328 (3)C19—C201.469 (3)
N7—C231.334 (3)C20—C211.489 (4)
N8—C251.324 (4)C22—C231.497 (4)
N8—C261.334 (4)C23—C261.380 (4)
N6—H60.80 (3)C24—C251.369 (4)
C1—C61.414 (3)C15—H150.9300
C1—C21.374 (4)C16—H160.9300
C2—C31.367 (4)C17—H170.9300
C3—C41.376 (4)C18—H180.9300
C4—C51.369 (3)C21—H21A0.88 (5)
C5—C61.395 (3)C21—H21B0.91 (4)
C6—C71.468 (3)C21—H21C0.94 (4)
C7—C81.496 (3)C24—H240.9300
C9—C101.484 (3)C25—H250.9300
C10—C131.374 (3)C26—H260.9300
C1—O1—H1109.00C7—C8—H8A109.00
C14—O3—H3A110.00N3—C11—H11119.00
N2—N1—C7120.53 (18)C12—C11—H11119.00
N1—N2—C9118.47 (18)N4—C12—H12118.00
C10—N3—C11115.5 (2)C11—C12—H12119.00
C12—N4—C13115.0 (2)C10—C13—H13119.00
C9—N2—H2A116.9 (15)N4—C13—H13119.00
N1—N2—H2A124.6 (15)C15—C14—C19120.1 (3)
N6—N5—C20119.58 (19)O3—C14—C15117.3 (2)
N5—N6—C22120.3 (2)O3—C14—C19122.6 (2)
C23—N7—C24115.9 (2)C14—C15—C16121.5 (3)
C25—N8—C26115.2 (2)C15—C16—C17119.8 (3)
C22—N6—H6117 (2)C16—C17—C18119.7 (3)
N5—N6—H6123 (2)C17—C18—C19122.0 (3)
O1—C1—C2117.5 (2)C18—C19—C20120.9 (2)
C2—C1—C6120.1 (2)C14—C19—C18116.9 (2)
O1—C1—C6122.37 (19)C14—C19—C20122.2 (2)
C1—C2—C3121.3 (2)N5—C20—C21123.2 (3)
C2—C3—C4120.0 (3)N5—C20—C19116.0 (2)
C3—C4—C5119.4 (2)C19—C20—C21120.8 (3)
C4—C5—C6122.5 (2)O4—C22—N6124.0 (3)
C1—C6—C5116.7 (2)O4—C22—C23123.9 (3)
C1—C6—C7122.37 (18)N6—C22—C23112.0 (2)
C5—C6—C7120.9 (2)C22—C23—C26120.6 (2)
N1—C7—C6115.00 (18)N7—C23—C22117.8 (3)
C6—C7—C8121.04 (18)N7—C23—C26121.6 (2)
N1—C7—C8123.96 (19)N7—C24—C25122.0 (3)
O2—C9—N2123.4 (2)N8—C25—C24122.9 (3)
O2—C9—C10122.60 (19)N8—C26—C23122.4 (3)
N2—C9—C10114.0 (2)C14—C15—H15119.00
N3—C10—C13122.1 (2)C16—C15—H15119.00
C9—C10—C13120.3 (2)C15—C16—H16120.00
N3—C10—C9117.61 (18)C17—C16—H16120.00
N3—C11—C12121.8 (3)C16—C17—H17120.00
N4—C12—C11122.9 (3)C18—C17—H17120.00
N4—C13—C10122.7 (2)C17—C18—H18119.00
C3—C2—H2119.00C19—C18—H18119.00
C1—C2—H2119.00C20—C21—H21A113 (3)
C2—C3—H3120.00C20—C21—H21B111 (2)
C4—C3—H3120.00C20—C21—H21C109 (2)
C3—C4—H4120.00H21A—C21—H21B111 (4)
C5—C4—H4120.00H21A—C21—H21C106 (4)
C4—C5—H5119.00H21B—C21—H21C107 (4)
C6—C5—H5119.00N7—C24—H24119.00
H8A—C8—H8B110.00C25—C24—H24119.00
H8A—C8—H8C109.00N8—C25—H25119.00
C7—C8—H8C109.00C24—C25—H25119.00
C7—C8—H8B109.00N8—C26—H26119.00
H8B—C8—H8C110.00C23—C26—H26119.00
C7—N1—N2—C9179.6 (2)C1—C6—C7—N1−7.5 (3)
N2—N1—C7—C6−179.11 (18)C1—C6—C7—C8173.0 (2)
N2—N1—C7—C80.5 (3)C5—C6—C7—C8−8.5 (3)
N1—N2—C9—O20.2 (3)N2—C9—C10—N34.2 (3)
N1—N2—C9—C10179.11 (18)N2—C9—C10—C13−175.6 (2)
C11—N3—C10—C9−178.49 (19)O2—C9—C10—N3−177.0 (2)
C11—N3—C10—C131.2 (3)O2—C9—C10—C133.3 (3)
C10—N3—C11—C120.5 (3)N3—C10—C13—N4−2.5 (3)
C13—N4—C12—C110.0 (3)C9—C10—C13—N4177.2 (2)
C12—N4—C13—C101.8 (3)N3—C11—C12—N4−1.1 (4)
C20—N5—N6—C22−178.8 (2)O3—C14—C15—C16−178.7 (3)
N6—N5—C20—C19179.7 (2)C19—C14—C15—C160.5 (4)
N6—N5—C20—C21−0.7 (4)O3—C14—C19—C18178.5 (2)
N5—N6—C22—O4−0.4 (4)O3—C14—C19—C20−1.3 (3)
N5—N6—C22—C23179.8 (2)C15—C14—C19—C18−0.6 (3)
C24—N7—C23—C22179.6 (2)C15—C14—C19—C20179.5 (2)
C24—N7—C23—C26−0.6 (4)C14—C15—C16—C17−0.1 (4)
C23—N7—C24—C25−0.7 (4)C15—C16—C17—C18−0.3 (4)
C26—N8—C25—C24−0.5 (4)C16—C17—C18—C190.1 (4)
C25—N8—C26—C23−0.8 (4)C17—C18—C19—C140.3 (4)
O1—C1—C6—C5178.8 (2)C17—C18—C19—C20−179.8 (2)
O1—C1—C6—C7−2.6 (3)C14—C19—C20—N5−2.1 (3)
C2—C1—C6—C7177.9 (2)C14—C19—C20—C21178.2 (3)
O1—C1—C2—C3179.5 (2)C18—C19—C20—N5178.1 (2)
C2—C1—C6—C5−0.8 (3)C18—C19—C20—C21−1.7 (4)
C6—C1—C2—C3−0.9 (3)O4—C22—C23—N7−177.6 (3)
C1—C2—C3—C41.2 (4)O4—C22—C23—C262.6 (4)
C2—C3—C4—C50.3 (3)N6—C22—C23—N72.2 (3)
C3—C4—C5—C6−2.1 (3)N6—C22—C23—C26−177.6 (2)
C4—C5—C6—C7−176.4 (2)N7—C23—C26—N81.4 (4)
C4—C5—C6—C12.3 (3)C22—C23—C26—N8−178.8 (2)
C5—C6—C7—N1171.1 (2)N7—C24—C25—N81.3 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.822.537 (2)145
N2—H2A···N30.80 (2)2.26 (2)2.654 (3)111.5 (17)
O3—H3A···N50.821.822.534 (3)145
N6—H6···N70.80 (3)2.21 (3)2.628 (3)113 (3)
C3—H3···O3i0.932.593.403 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.821.822.537 (2)145
N2—H2A⋯N30.80 (2)2.26 (2)2.654 (3)111.5 (17)
O3—H3A⋯N50.821.822.534 (3)145
N6—H6⋯N70.80 (3)2.21 (3)2.628 (3)113 (3)
C3—H3⋯O3i 0.932.593.403 (3)146

Symmetry code: (i) .

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