| Literature DB >> 24454031 |
P Arularasan1, G Chakkaravarthi2, R Mohan1.
Abstract
In the polymeric title compound, [Ba(NO3)2(C6H9N3O2)2] n , the Ba(II) atom is located on a crystallographic twofold axis and is coordinated by ten O atoms. Six are derived from two zwitterionic l-histidine mol-ecules that simultaneously chelate one Ba(II) atom and bridge to another. The remaining four O atoms are derived from two chelating nitrates. The mol-ecules assemble to form a chain along [010]. In the crystal, chains are linked via N-H⋯O and N-H⋯N hydrogen bonds, generating a three-dimensional network.Entities:
Year: 2013 PMID: 24454031 PMCID: PMC3884255 DOI: 10.1107/S1600536813027402
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ba(NO3)2(C6H9N3O2)2] | |
| Monoclinic, | Mo |
| Hall symbol: C 2y | Cell parameters from 6604 reflections |
| θ = 2.6–34.9° | |
| µ = 2.18 mm−1 | |
| β = 105.432 (1)° | Block, colourless |
| 0.18 × 0.14 × 0.12 mm | |
| Bruker Kappa APEXII diffractometer | 3281 independent reflections |
| Radiation source: fine-focus sealed tube | 3281 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 34.9°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 6598 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3281 reflections | Δρmax = 1.40 e Å−3 |
| 142 parameters | Δρmin = −1.32 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 1164 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.004 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.31466 (7) | 0.2871 (5) | 0.4170 (3) | 0.0239 (4) | |
| C2 | 0.26202 (8) | 0.1922 (6) | 0.3475 (3) | 0.0304 (4) | |
| H2 | 0.2451 | 0.0343 | 0.3795 | 0.036* | |
| C3 | 0.27774 (8) | 0.5757 (17) | 0.2181 (3) | 0.0335 (5) | |
| H3 | 0.2722 | 0.7264 | 0.1436 | 0.040* | |
| C4 | 0.35756 (8) | 0.1666 (6) | 0.5623 (3) | 0.0290 (5) | |
| H4A | 0.3439 | −0.0118 | 0.5935 | 0.035* | |
| H4B | 0.3623 | 0.2948 | 0.6561 | 0.035* | |
| C5 | 0.41435 (6) | 0.1163 (13) | 0.5298 (2) | 0.0215 (7) | |
| H5 | 0.4297 | 0.3001 | 0.5099 | 0.026* | |
| C6 | 0.45415 (7) | −0.0175 (5) | 0.6835 (2) | 0.0210 (3) | |
| N1 | 0.23922 (7) | 0.3754 (6) | 0.2217 (3) | 0.0325 (4) | |
| H1 | 0.2062 | 0.3656 | 0.1559 | 0.039* | |
| N2 | 0.32423 (7) | 0.5272 (4) | 0.3354 (3) | 0.0295 (5) | |
| N3 | 0.40970 (7) | −0.0632 (4) | 0.3806 (2) | 0.0228 (3) | |
| H3A | 0.3830 | −0.1914 | 0.3737 | 0.034* | |
| H3B | 0.4420 | −0.1508 | 0.3889 | 0.034* | |
| H3C | 0.4014 | 0.0447 | 0.2896 | 0.034* | |
| N4 | 0.37614 (8) | −0.6072 (6) | 1.0220 (3) | 0.0332 (4) | |
| O1 | 0.47815 (7) | −0.2417 (4) | 0.6626 (2) | 0.0307 (3) | |
| O2 | 0.45918 (6) | 0.1055 (13) | 0.81973 (19) | 0.0294 (4) | |
| O3 | 0.41918 (7) | −0.6466 (7) | 1.1390 (3) | 0.0470 (6) | |
| O4 | 0.33641 (9) | −0.7646 (8) | 1.0069 (4) | 0.0721 (10) | |
| O5 | 0.37673 (8) | −0.4073 (15) | 0.9258 (3) | 0.0556 (6) | |
| Ba1 | 0.5000 | −0.4123 | 1.0000 | 0.01742 (4) |
| C1 | 0.0190 (6) | 0.0295 (10) | 0.0223 (8) | 0.0045 (7) | 0.0037 (6) | −0.0027 (7) |
| C2 | 0.0230 (7) | 0.0366 (11) | 0.0318 (10) | 0.0004 (7) | 0.0078 (7) | −0.0016 (9) |
| C3 | 0.0314 (7) | 0.0362 (14) | 0.0296 (8) | 0.0084 (12) | 0.0024 (6) | 0.004 (2) |
| C4 | 0.0245 (7) | 0.0423 (15) | 0.0203 (8) | 0.0088 (7) | 0.0060 (6) | 0.0015 (7) |
| C5 | 0.0199 (5) | 0.026 (2) | 0.0174 (6) | 0.0013 (9) | 0.0026 (4) | 0.0025 (9) |
| C6 | 0.0183 (6) | 0.0243 (8) | 0.0183 (7) | −0.0019 (6) | 0.0015 (5) | 0.0044 (6) |
| N1 | 0.0196 (6) | 0.0449 (12) | 0.0288 (9) | 0.0058 (7) | −0.0007 (6) | −0.0050 (8) |
| N2 | 0.0245 (6) | 0.0315 (14) | 0.0288 (8) | 0.0010 (6) | 0.0006 (6) | −0.0009 (7) |
| N3 | 0.0214 (6) | 0.0292 (9) | 0.0173 (7) | 0.0016 (6) | 0.0043 (5) | 0.0019 (6) |
| N4 | 0.0239 (7) | 0.0451 (13) | 0.0306 (10) | −0.0018 (8) | 0.0074 (7) | −0.0103 (9) |
| O1 | 0.0340 (7) | 0.0345 (9) | 0.0228 (7) | 0.0136 (7) | 0.0059 (6) | 0.0055 (6) |
| O2 | 0.0357 (5) | 0.0258 (12) | 0.0207 (5) | −0.0022 (12) | −0.0031 (4) | −0.0052 (12) |
| O3 | 0.0274 (7) | 0.0762 (18) | 0.0357 (10) | −0.0054 (9) | 0.0056 (7) | 0.0222 (11) |
| O4 | 0.0427 (11) | 0.092 (2) | 0.088 (2) | −0.0382 (13) | 0.0288 (13) | −0.0513 (19) |
| O5 | 0.0467 (9) | 0.0721 (16) | 0.0462 (11) | 0.020 (2) | 0.0091 (8) | 0.018 (3) |
| Ba1 | 0.01895 (5) | 0.01937 (6) | 0.01343 (5) | 0.000 | 0.00342 (3) | 0.000 |
| C1—C2 | 1.360 (3) | N3—H3B | 0.8900 |
| C1—N2 | 1.374 (3) | N3—H3C | 0.8900 |
| C1—C4 | 1.496 (3) | N4—O4 | 1.217 (3) |
| C2—N1 | 1.360 (4) | N4—O5 | 1.240 (6) |
| C2—H2 | 0.9300 | N4—O3 | 1.255 (3) |
| C3—N2 | 1.320 (3) | N4—Ba1 | 3.271 (2) |
| C3—N1 | 1.353 (7) | O1—Ba1 | 2.8300 (17) |
| C3—H3 | 0.9300 | O2—Ba1i | 2.767 (5) |
| C4—C5 | 1.528 (3) | O2—Ba1 | 2.907 (5) |
| C4—H4A | 0.9700 | O3—Ba1 | 2.8022 (19) |
| C4—H4B | 0.9700 | O5—Ba1 | 2.9664 (18) |
| C5—N3 | 1.482 (4) | Ba1—O2ii | 2.767 (5) |
| C5—C6 | 1.530 (3) | Ba1—O2iii | 2.767 (5) |
| C5—H5 | 0.9800 | Ba1—O3iv | 2.8022 (19) |
| C6—O2 | 1.249 (4) | Ba1—O1iv | 2.8300 (17) |
| C6—O1 | 1.251 (3) | Ba1—O2iv | 2.907 (5) |
| C6—Ba1 | 3.180 (2) | Ba1—O5iv | 2.9664 (18) |
| N1—H1 | 0.8600 | Ba1—C6iv | 3.180 (2) |
| N3—H3A | 0.8900 | ||
| C2—C1—N2 | 109.63 (19) | O3—Ba1—O1iv | 70.91 (6) |
| C2—C1—C4 | 128.2 (2) | O2ii—Ba1—O1 | 75.58 (9) |
| N2—C1—C4 | 122.15 (19) | O2iii—Ba1—O1 | 135.86 (7) |
| N1—C2—C1 | 106.0 (2) | O3iv—Ba1—O1 | 70.91 (6) |
| N1—C2—H2 | 127.0 | O3—Ba1—O1 | 123.50 (5) |
| C1—C2—H2 | 127.0 | O1iv—Ba1—O1 | 146.92 (9) |
| N2—C3—N1 | 110.5 (5) | O2ii—Ba1—O2iv | 178.12 (13) |
| N2—C3—H3 | 124.8 | O2iii—Ba1—O2iv | 112.65 (5) |
| N1—C3—H3 | 124.8 | O3iv—Ba1—O2iv | 110.73 (6) |
| C1—C4—C5 | 114.35 (19) | O3—Ba1—O2iv | 108.08 (8) |
| C1—C4—H4A | 108.7 | O1iv—Ba1—O2iv | 45.61 (7) |
| C5—C4—H4A | 108.7 | O1—Ba1—O2iv | 102.75 (7) |
| C1—C4—H4B | 108.7 | O2ii—Ba1—O2 | 112.65 (5) |
| C5—C4—H4B | 108.7 | O2iii—Ba1—O2 | 178.12 (14) |
| H4A—C4—H4B | 107.6 | O3iv—Ba1—O2 | 108.08 (8) |
| N3—C5—C4 | 111.5 (2) | O3—Ba1—O2 | 110.73 (6) |
| N3—C5—C6 | 110.6 (3) | O1iv—Ba1—O2 | 102.75 (7) |
| C4—C5—C6 | 109.95 (18) | O1—Ba1—O2 | 45.61 (7) |
| N3—C5—H5 | 108.2 | O2iv—Ba1—O2 | 65.47 (13) |
| C4—C5—H5 | 108.2 | O2ii—Ba1—O5iv | 109.27 (11) |
| C6—C5—H5 | 108.2 | O2iii—Ba1—O5iv | 71.53 (14) |
| O2—C6—O1 | 125.7 (3) | O3iv—Ba1—O5iv | 43.25 (9) |
| O2—C6—C5 | 116.9 (3) | O3—Ba1—O5iv | 137.28 (10) |
| O1—C6—C5 | 117.4 (2) | O1iv—Ba1—O5iv | 82.88 (6) |
| O2—C6—Ba1 | 66.1 (3) | O1—Ba1—O5iv | 96.85 (7) |
| O1—C6—Ba1 | 62.55 (11) | O2iv—Ba1—O5iv | 71.66 (13) |
| C5—C6—Ba1 | 160.70 (18) | O2—Ba1—O5iv | 107.53 (13) |
| C3—N1—C2 | 107.9 (2) | O2ii—Ba1—O5 | 71.53 (14) |
| C3—N1—H1 | 126.0 | O2iii—Ba1—O5 | 109.27 (11) |
| C2—N1—H1 | 126.0 | O3iv—Ba1—O5 | 137.28 (10) |
| C3—N2—C1 | 105.9 (3) | O3—Ba1—O5 | 43.25 (9) |
| C5—N3—H3A | 109.5 | O1iv—Ba1—O5 | 96.85 (7) |
| C5—N3—H3B | 109.5 | O1—Ba1—O5 | 82.88 (6) |
| H3A—N3—H3B | 109.5 | O2iv—Ba1—O5 | 107.53 (13) |
| C5—N3—H3C | 109.5 | O2—Ba1—O5 | 71.66 (13) |
| H3A—N3—H3C | 109.5 | O5iv—Ba1—O5 | 179.1 (3) |
| H3B—N3—H3C | 109.5 | O2ii—Ba1—C6iv | 158.50 (8) |
| O4—N4—O5 | 123.2 (3) | O2iii—Ba1—C6iv | 91.99 (9) |
| O4—N4—O3 | 119.5 (3) | O3iv—Ba1—C6iv | 115.73 (5) |
| O5—N4—O3 | 117.3 (2) | O3—Ba1—C6iv | 91.67 (7) |
| O4—N4—Ba1 | 156.8 (2) | O1iv—Ba1—C6iv | 23.09 (6) |
| O5—N4—Ba1 | 64.94 (12) | O1—Ba1—C6iv | 125.88 (6) |
| O3—N4—Ba1 | 57.42 (12) | O2iv—Ba1—C6iv | 23.14 (7) |
| C6—O1—Ba1 | 94.36 (13) | O2—Ba1—C6iv | 86.16 (8) |
| C6—O2—Ba1i | 143.9 (3) | O5iv—Ba1—C6iv | 72.50 (9) |
| C6—O2—Ba1 | 90.8 (3) | O5—Ba1—C6iv | 106.94 (10) |
| Ba1i—O2—Ba1 | 112.65 (5) | O2ii—Ba1—C6 | 91.99 (9) |
| N4—O3—Ba1 | 100.40 (16) | O2iii—Ba1—C6 | 158.50 (8) |
| N4—O5—Ba1 | 92.81 (15) | O3iv—Ba1—C6 | 91.67 (7) |
| O2ii—Ba1—O2iii | 69.23 (15) | O3—Ba1—C6 | 115.73 (5) |
| O2ii—Ba1—O3iv | 69.64 (6) | O1iv—Ba1—C6 | 125.88 (6) |
| O2iii—Ba1—O3iv | 72.42 (8) | O1—Ba1—C6 | 23.09 (6) |
| O2ii—Ba1—O3 | 72.42 (8) | O2iv—Ba1—C6 | 86.16 (8) |
| O2iii—Ba1—O3 | 69.64 (6) | O2—Ba1—C6 | 23.14 (7) |
| O3iv—Ba1—O3 | 133.48 (13) | O5iv—Ba1—C6 | 106.94 (10) |
| O2ii—Ba1—O1iv | 135.86 (7) | O5—Ba1—C6 | 72.50 (9) |
| O2iii—Ba1—O1iv | 75.58 (9) | C6iv—Ba1—C6 | 108.20 (8) |
| O3iv—Ba1—O1iv | 123.50 (5) | ||
| N2—C1—C2—N1 | 0.3 (3) | C6—O2—Ba1—O1iv | 178.66 (13) |
| C4—C1—C2—N1 | 178.7 (2) | Ba1i—O2—Ba1—O1iv | 26.92 (7) |
| C2—C1—C4—C5 | 129.1 (3) | C6—O2—Ba1—O1 | 9.91 (11) |
| N2—C1—C4—C5 | −52.6 (4) | Ba1i—O2—Ba1—O1 | −141.84 (10) |
| C1—C4—C5—N3 | −54.6 (4) | C6—O2—Ba1—O2iv | 151.75 (17) |
| C1—C4—C5—C6 | −177.8 (3) | Ba1i—O2—Ba1—O2iv | 0.0 |
| N3—C5—C6—O2 | −176.0 (3) | C6—O2—Ba1—O5iv | 92.20 (15) |
| C4—C5—C6—O2 | −52.3 (4) | Ba1i—O2—Ba1—O5iv | −59.54 (9) |
| N3—C5—C6—O1 | 3.0 (3) | C6—O2—Ba1—O5 | −88.25 (17) |
| C4—C5—C6—O1 | 126.7 (3) | Ba1i—O2—Ba1—O5 | 120.00 (11) |
| N3—C5—C6—Ba1 | −81.9 (5) | C6—O2—Ba1—C6iv | 162.49 (12) |
| C4—C5—C6—Ba1 | 41.8 (9) | Ba1i—O2—Ba1—C6iv | 10.74 (6) |
| N2—C3—N1—C2 | 0.4 (4) | Ba1i—O2—Ba1—C6 | −151.75 (17) |
| C1—C2—N1—C3 | −0.4 (3) | N4—O5—Ba1—O2ii | 69.8 (3) |
| N1—C3—N2—C1 | −0.3 (4) | N4—O5—Ba1—O2iii | 10.7 (3) |
| C2—C1—N2—C3 | 0.0 (3) | N4—O5—Ba1—O3iv | 95.3 (2) |
| C4—C1—N2—C3 | −178.6 (3) | N4—O5—Ba1—O3 | −13.90 (19) |
| O2—C6—O1—Ba1 | 20.7 (3) | N4—O5—Ba1—O1iv | −66.4 (3) |
| C5—C6—O1—Ba1 | −158.23 (19) | N4—O5—Ba1—O1 | 146.9 (3) |
| O1—C6—O2—Ba1i | 112.2 (4) | N4—O5—Ba1—O2iv | −111.9 (3) |
| C5—C6—O2—Ba1i | −68.9 (4) | N4—O5—Ba1—O2 | −167.6 (3) |
| Ba1—C6—O2—Ba1i | 132.2 (3) | N4—O5—Ba1—C6iv | −87.7 (3) |
| O1—C6—O2—Ba1 | −20.0 (3) | N4—O5—Ba1—C6 | 168.1 (3) |
| C5—C6—O2—Ba1 | 158.9 (2) | O2—C6—Ba1—O2ii | 154.08 (15) |
| O4—N4—O3—Ba1 | 153.1 (2) | O1—C6—Ba1—O2ii | −44.19 (13) |
| O5—N4—O3—Ba1 | −26.4 (3) | C5—C6—Ba1—O2ii | 50.8 (6) |
| O4—N4—O5—Ba1 | −155.0 (3) | O2—C6—Ba1—O2iii | −177.57 (18) |
| O3—N4—O5—Ba1 | 24.4 (3) | O1—C6—Ba1—O2iii | −15.8 (2) |
| N4—O3—Ba1—O2ii | −67.5 (2) | C5—C6—Ba1—O2iii | 79.2 (6) |
| N4—O3—Ba1—O2iii | −141.3 (2) | O2—C6—Ba1—O3iv | −136.24 (14) |
| N4—O3—Ba1—O3iv | −104.1 (2) | O1—C6—Ba1—O3iv | 25.49 (14) |
| N4—O3—Ba1—O1iv | 137.5 (2) | C5—C6—Ba1—O3iv | 120.5 (6) |
| N4—O3—Ba1—O1 | −9.1 (2) | O2—C6—Ba1—O3 | 82.67 (16) |
| N4—O3—Ba1—O2iv | 110.6 (2) | O1—C6—Ba1—O3 | −115.60 (14) |
| N4—O3—Ba1—O2 | 40.7 (2) | C5—C6—Ba1—O3 | −20.6 (6) |
| N4—O3—Ba1—O5iv | −167.1 (2) | O2—C6—Ba1—O1iv | −1.61 (15) |
| N4—O3—Ba1—O5 | 14.0 (2) | O1—C6—Ba1—O1iv | 160.12 (10) |
| N4—O3—Ba1—C6iv | 127.2 (2) | C5—C6—Ba1—O1iv | −104.9 (6) |
| N4—O3—Ba1—C6 | 16.0 (2) | O2—C6—Ba1—O1 | −161.7 (2) |
| C6—O1—Ba1—O2ii | 134.00 (14) | C5—C6—Ba1—O1 | 95.0 (6) |
| C6—O1—Ba1—O2iii | 171.74 (13) | O2—C6—Ba1—O2iv | −25.57 (16) |
| C6—O1—Ba1—O3iv | −152.92 (15) | O1—C6—Ba1—O2iv | 136.16 (13) |
| C6—O1—Ba1—O3 | 76.98 (16) | C5—C6—Ba1—O2iv | −128.8 (6) |
| C6—O1—Ba1—O1iv | −30.33 (12) | O1—C6—Ba1—O2 | 161.7 (2) |
| C6—O1—Ba1—O2iv | −45.12 (14) | C5—C6—Ba1—O2 | −103.3 (6) |
| C6—O1—Ba1—O2 | −9.93 (12) | O2—C6—Ba1—O5iv | −95.07 (16) |
| C6—O1—Ba1—O5iv | −117.80 (18) | O1—C6—Ba1—O5iv | 66.65 (17) |
| C6—O1—Ba1—O5 | 61.31 (18) | C5—C6—Ba1—O5iv | 161.7 (6) |
| C6—O1—Ba1—C6iv | −44.47 (16) | O2—C6—Ba1—O5 | 84.17 (19) |
| C6—O2—Ba1—O2ii | −28.25 (17) | O1—C6—Ba1—O5 | −114.11 (18) |
| Ba1i—O2—Ba1—O2ii | 180.000 (1) | C5—C6—Ba1—O5 | −19.1 (6) |
| C6—O2—Ba1—O3iv | 46.66 (15) | O2—C6—Ba1—C6iv | −18.42 (12) |
| Ba1i—O2—Ba1—O3iv | −105.09 (7) | O1—C6—Ba1—C6iv | 143.31 (14) |
| C6—O2—Ba1—O3 | −107.18 (14) | C5—C6—Ba1—C6iv | −121.7 (6) |
| Ba1i—O2—Ba1—O3 | 101.07 (8) |
| H··· | ||||
| N1—H1···O4v | 0.86 | 2.29 | 2.854 (3) | 123 |
| N1—H1···O5vi | 0.86 | 2.37 | 3.121 (3) | 146 |
| N3—H3 | 0.89 | 2.19 | 3.029 (2) | 158 |
| N3—H3 | 0.89 | 2.05 | 2.867 (3) | 153 |
| N3—H3 | 0.89 | 1.94 | 2.827 (3) | 174 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O4i | 0.86 | 2.29 | 2.854 (3) | 123 |
| N1—H1⋯O5ii | 0.86 | 2.37 | 3.121 (3) | 146 |
| N3—H3 | 0.89 | 2.19 | 3.029 (2) | 158 |
| N3—H3 | 0.89 | 2.05 | 2.867 (3) | 153 |
| N3—H3 | 0.89 | 1.94 | 2.827 (3) | 174 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .