Literature DB >> 24454031

catena-Poly[[bis-(nitrato-κ(2) O,O')barium]-bis-(μ-l-histidine-κ(3) O,O':O].

P Arularasan1, G Chakkaravarthi2, R Mohan1.   

Abstract

In the polymeric title compound, [Ba(NO3)2(C6H9N3O2)2] n , the Ba(II) atom is located on a crystallographic twofold axis and is coordinated by ten O atoms. Six are derived from two zwitterionic l-histidine mol-ecules that simultaneously chelate one Ba(II) atom and bridge to another. The remaining four O atoms are derived from two chelating nitrates. The mol-ecules assemble to form a chain along [010]. In the crystal, chains are linked via N-H⋯O and N-H⋯N hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454031      PMCID: PMC3884255          DOI: 10.1107/S1600536813027402

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of histidine, see: Eichler et al. (2005 ▶); Wimalasena et al. (2007 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For related structures, see: Andra et al. (2010 ▶); Gokul Raj et al. (2006 ▶).

Experimental

Crystal data

[Ba(NO3)2(C6H9N3O2)2] M = 571.68 Monoclinic, a = 24.9063 (8) Å b = 4.7226 (1) Å c = 8.3180 (3) Å β = 105.432 (1)° V = 943.11 (5) Å3 Z = 2 Mo Kα radiation μ = 2.18 mm−1 T = 295 K 0.18 × 0.14 × 0.12 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.695, T max = 0.780 6598 measured reflections 3281 independent reflections 3281 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.048 S = 1.15 3281 reflections 142 parameters 2 restraints H-atom parameters constrained Δρmax = 1.40 e Å−3 Δρmin = −1.32 e Å−3 Absolute structure: Flack (1983 ▶), 1164 Friedel pairs Absolute structure parameter: 0.004 (13) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813027402/tk5259sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027402/tk5259Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027402/tk5259Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ba(NO3)2(C6H9N3O2)2]F(000) = 564
Mr = 571.68Dx = 2.013 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 6604 reflections
a = 24.9063 (8) Åθ = 2.6–34.9°
b = 4.7226 (1) ŵ = 2.18 mm1
c = 8.3180 (3) ÅT = 295 K
β = 105.432 (1)°Block, colourless
V = 943.11 (5) Å30.18 × 0.14 × 0.12 mm
Z = 2
Bruker Kappa APEXII diffractometer3281 independent reflections
Radiation source: fine-focus sealed tube3281 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
ω and φ scanθmax = 34.9°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −39→40
Tmin = 0.695, Tmax = 0.780k = −6→7
6598 measured reflectionsl = −13→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019H-atom parameters constrained
wR(F2) = 0.048w = 1/[σ2(Fo2) + (0.021P)2] where P = (Fo2 + 2Fc2)/3
S = 1.15(Δ/σ)max < 0.001
3281 reflectionsΔρmax = 1.40 e Å3
142 parametersΔρmin = −1.32 e Å3
2 restraintsAbsolute structure: Flack (1983), 1164 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.004 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.31466 (7)0.2871 (5)0.4170 (3)0.0239 (4)
C20.26202 (8)0.1922 (6)0.3475 (3)0.0304 (4)
H20.24510.03430.37950.036*
C30.27774 (8)0.5757 (17)0.2181 (3)0.0335 (5)
H30.27220.72640.14360.040*
C40.35756 (8)0.1666 (6)0.5623 (3)0.0290 (5)
H4A0.3439−0.01180.59350.035*
H4B0.36230.29480.65610.035*
C50.41435 (6)0.1163 (13)0.5298 (2)0.0215 (7)
H50.42970.30010.50990.026*
C60.45415 (7)−0.0175 (5)0.6835 (2)0.0210 (3)
N10.23922 (7)0.3754 (6)0.2217 (3)0.0325 (4)
H10.20620.36560.15590.039*
N20.32423 (7)0.5272 (4)0.3354 (3)0.0295 (5)
N30.40970 (7)−0.0632 (4)0.3806 (2)0.0228 (3)
H3A0.3830−0.19140.37370.034*
H3B0.4420−0.15080.38890.034*
H3C0.40140.04470.28960.034*
N40.37614 (8)−0.6072 (6)1.0220 (3)0.0332 (4)
O10.47815 (7)−0.2417 (4)0.6626 (2)0.0307 (3)
O20.45918 (6)0.1055 (13)0.81973 (19)0.0294 (4)
O30.41918 (7)−0.6466 (7)1.1390 (3)0.0470 (6)
O40.33641 (9)−0.7646 (8)1.0069 (4)0.0721 (10)
O50.37673 (8)−0.4073 (15)0.9258 (3)0.0556 (6)
Ba10.5000−0.41231.00000.01742 (4)
U11U22U33U12U13U23
C10.0190 (6)0.0295 (10)0.0223 (8)0.0045 (7)0.0037 (6)−0.0027 (7)
C20.0230 (7)0.0366 (11)0.0318 (10)0.0004 (7)0.0078 (7)−0.0016 (9)
C30.0314 (7)0.0362 (14)0.0296 (8)0.0084 (12)0.0024 (6)0.004 (2)
C40.0245 (7)0.0423 (15)0.0203 (8)0.0088 (7)0.0060 (6)0.0015 (7)
C50.0199 (5)0.026 (2)0.0174 (6)0.0013 (9)0.0026 (4)0.0025 (9)
C60.0183 (6)0.0243 (8)0.0183 (7)−0.0019 (6)0.0015 (5)0.0044 (6)
N10.0196 (6)0.0449 (12)0.0288 (9)0.0058 (7)−0.0007 (6)−0.0050 (8)
N20.0245 (6)0.0315 (14)0.0288 (8)0.0010 (6)0.0006 (6)−0.0009 (7)
N30.0214 (6)0.0292 (9)0.0173 (7)0.0016 (6)0.0043 (5)0.0019 (6)
N40.0239 (7)0.0451 (13)0.0306 (10)−0.0018 (8)0.0074 (7)−0.0103 (9)
O10.0340 (7)0.0345 (9)0.0228 (7)0.0136 (7)0.0059 (6)0.0055 (6)
O20.0357 (5)0.0258 (12)0.0207 (5)−0.0022 (12)−0.0031 (4)−0.0052 (12)
O30.0274 (7)0.0762 (18)0.0357 (10)−0.0054 (9)0.0056 (7)0.0222 (11)
O40.0427 (11)0.092 (2)0.088 (2)−0.0382 (13)0.0288 (13)−0.0513 (19)
O50.0467 (9)0.0721 (16)0.0462 (11)0.020 (2)0.0091 (8)0.018 (3)
Ba10.01895 (5)0.01937 (6)0.01343 (5)0.0000.00342 (3)0.000
C1—C21.360 (3)N3—H3B0.8900
C1—N21.374 (3)N3—H3C0.8900
C1—C41.496 (3)N4—O41.217 (3)
C2—N11.360 (4)N4—O51.240 (6)
C2—H20.9300N4—O31.255 (3)
C3—N21.320 (3)N4—Ba13.271 (2)
C3—N11.353 (7)O1—Ba12.8300 (17)
C3—H30.9300O2—Ba1i2.767 (5)
C4—C51.528 (3)O2—Ba12.907 (5)
C4—H4A0.9700O3—Ba12.8022 (19)
C4—H4B0.9700O5—Ba12.9664 (18)
C5—N31.482 (4)Ba1—O2ii2.767 (5)
C5—C61.530 (3)Ba1—O2iii2.767 (5)
C5—H50.9800Ba1—O3iv2.8022 (19)
C6—O21.249 (4)Ba1—O1iv2.8300 (17)
C6—O11.251 (3)Ba1—O2iv2.907 (5)
C6—Ba13.180 (2)Ba1—O5iv2.9664 (18)
N1—H10.8600Ba1—C6iv3.180 (2)
N3—H3A0.8900
C2—C1—N2109.63 (19)O3—Ba1—O1iv70.91 (6)
C2—C1—C4128.2 (2)O2ii—Ba1—O175.58 (9)
N2—C1—C4122.15 (19)O2iii—Ba1—O1135.86 (7)
N1—C2—C1106.0 (2)O3iv—Ba1—O170.91 (6)
N1—C2—H2127.0O3—Ba1—O1123.50 (5)
C1—C2—H2127.0O1iv—Ba1—O1146.92 (9)
N2—C3—N1110.5 (5)O2ii—Ba1—O2iv178.12 (13)
N2—C3—H3124.8O2iii—Ba1—O2iv112.65 (5)
N1—C3—H3124.8O3iv—Ba1—O2iv110.73 (6)
C1—C4—C5114.35 (19)O3—Ba1—O2iv108.08 (8)
C1—C4—H4A108.7O1iv—Ba1—O2iv45.61 (7)
C5—C4—H4A108.7O1—Ba1—O2iv102.75 (7)
C1—C4—H4B108.7O2ii—Ba1—O2112.65 (5)
C5—C4—H4B108.7O2iii—Ba1—O2178.12 (14)
H4A—C4—H4B107.6O3iv—Ba1—O2108.08 (8)
N3—C5—C4111.5 (2)O3—Ba1—O2110.73 (6)
N3—C5—C6110.6 (3)O1iv—Ba1—O2102.75 (7)
C4—C5—C6109.95 (18)O1—Ba1—O245.61 (7)
N3—C5—H5108.2O2iv—Ba1—O265.47 (13)
C4—C5—H5108.2O2ii—Ba1—O5iv109.27 (11)
C6—C5—H5108.2O2iii—Ba1—O5iv71.53 (14)
O2—C6—O1125.7 (3)O3iv—Ba1—O5iv43.25 (9)
O2—C6—C5116.9 (3)O3—Ba1—O5iv137.28 (10)
O1—C6—C5117.4 (2)O1iv—Ba1—O5iv82.88 (6)
O2—C6—Ba166.1 (3)O1—Ba1—O5iv96.85 (7)
O1—C6—Ba162.55 (11)O2iv—Ba1—O5iv71.66 (13)
C5—C6—Ba1160.70 (18)O2—Ba1—O5iv107.53 (13)
C3—N1—C2107.9 (2)O2ii—Ba1—O571.53 (14)
C3—N1—H1126.0O2iii—Ba1—O5109.27 (11)
C2—N1—H1126.0O3iv—Ba1—O5137.28 (10)
C3—N2—C1105.9 (3)O3—Ba1—O543.25 (9)
C5—N3—H3A109.5O1iv—Ba1—O596.85 (7)
C5—N3—H3B109.5O1—Ba1—O582.88 (6)
H3A—N3—H3B109.5O2iv—Ba1—O5107.53 (13)
C5—N3—H3C109.5O2—Ba1—O571.66 (13)
H3A—N3—H3C109.5O5iv—Ba1—O5179.1 (3)
H3B—N3—H3C109.5O2ii—Ba1—C6iv158.50 (8)
O4—N4—O5123.2 (3)O2iii—Ba1—C6iv91.99 (9)
O4—N4—O3119.5 (3)O3iv—Ba1—C6iv115.73 (5)
O5—N4—O3117.3 (2)O3—Ba1—C6iv91.67 (7)
O4—N4—Ba1156.8 (2)O1iv—Ba1—C6iv23.09 (6)
O5—N4—Ba164.94 (12)O1—Ba1—C6iv125.88 (6)
O3—N4—Ba157.42 (12)O2iv—Ba1—C6iv23.14 (7)
C6—O1—Ba194.36 (13)O2—Ba1—C6iv86.16 (8)
C6—O2—Ba1i143.9 (3)O5iv—Ba1—C6iv72.50 (9)
C6—O2—Ba190.8 (3)O5—Ba1—C6iv106.94 (10)
Ba1i—O2—Ba1112.65 (5)O2ii—Ba1—C691.99 (9)
N4—O3—Ba1100.40 (16)O2iii—Ba1—C6158.50 (8)
N4—O5—Ba192.81 (15)O3iv—Ba1—C691.67 (7)
O2ii—Ba1—O2iii69.23 (15)O3—Ba1—C6115.73 (5)
O2ii—Ba1—O3iv69.64 (6)O1iv—Ba1—C6125.88 (6)
O2iii—Ba1—O3iv72.42 (8)O1—Ba1—C623.09 (6)
O2ii—Ba1—O372.42 (8)O2iv—Ba1—C686.16 (8)
O2iii—Ba1—O369.64 (6)O2—Ba1—C623.14 (7)
O3iv—Ba1—O3133.48 (13)O5iv—Ba1—C6106.94 (10)
O2ii—Ba1—O1iv135.86 (7)O5—Ba1—C672.50 (9)
O2iii—Ba1—O1iv75.58 (9)C6iv—Ba1—C6108.20 (8)
O3iv—Ba1—O1iv123.50 (5)
N2—C1—C2—N10.3 (3)C6—O2—Ba1—O1iv178.66 (13)
C4—C1—C2—N1178.7 (2)Ba1i—O2—Ba1—O1iv26.92 (7)
C2—C1—C4—C5129.1 (3)C6—O2—Ba1—O19.91 (11)
N2—C1—C4—C5−52.6 (4)Ba1i—O2—Ba1—O1−141.84 (10)
C1—C4—C5—N3−54.6 (4)C6—O2—Ba1—O2iv151.75 (17)
C1—C4—C5—C6−177.8 (3)Ba1i—O2—Ba1—O2iv0.0
N3—C5—C6—O2−176.0 (3)C6—O2—Ba1—O5iv92.20 (15)
C4—C5—C6—O2−52.3 (4)Ba1i—O2—Ba1—O5iv−59.54 (9)
N3—C5—C6—O13.0 (3)C6—O2—Ba1—O5−88.25 (17)
C4—C5—C6—O1126.7 (3)Ba1i—O2—Ba1—O5120.00 (11)
N3—C5—C6—Ba1−81.9 (5)C6—O2—Ba1—C6iv162.49 (12)
C4—C5—C6—Ba141.8 (9)Ba1i—O2—Ba1—C6iv10.74 (6)
N2—C3—N1—C20.4 (4)Ba1i—O2—Ba1—C6−151.75 (17)
C1—C2—N1—C3−0.4 (3)N4—O5—Ba1—O2ii69.8 (3)
N1—C3—N2—C1−0.3 (4)N4—O5—Ba1—O2iii10.7 (3)
C2—C1—N2—C30.0 (3)N4—O5—Ba1—O3iv95.3 (2)
C4—C1—N2—C3−178.6 (3)N4—O5—Ba1—O3−13.90 (19)
O2—C6—O1—Ba120.7 (3)N4—O5—Ba1—O1iv−66.4 (3)
C5—C6—O1—Ba1−158.23 (19)N4—O5—Ba1—O1146.9 (3)
O1—C6—O2—Ba1i112.2 (4)N4—O5—Ba1—O2iv−111.9 (3)
C5—C6—O2—Ba1i−68.9 (4)N4—O5—Ba1—O2−167.6 (3)
Ba1—C6—O2—Ba1i132.2 (3)N4—O5—Ba1—C6iv−87.7 (3)
O1—C6—O2—Ba1−20.0 (3)N4—O5—Ba1—C6168.1 (3)
C5—C6—O2—Ba1158.9 (2)O2—C6—Ba1—O2ii154.08 (15)
O4—N4—O3—Ba1153.1 (2)O1—C6—Ba1—O2ii−44.19 (13)
O5—N4—O3—Ba1−26.4 (3)C5—C6—Ba1—O2ii50.8 (6)
O4—N4—O5—Ba1−155.0 (3)O2—C6—Ba1—O2iii−177.57 (18)
O3—N4—O5—Ba124.4 (3)O1—C6—Ba1—O2iii−15.8 (2)
N4—O3—Ba1—O2ii−67.5 (2)C5—C6—Ba1—O2iii79.2 (6)
N4—O3—Ba1—O2iii−141.3 (2)O2—C6—Ba1—O3iv−136.24 (14)
N4—O3—Ba1—O3iv−104.1 (2)O1—C6—Ba1—O3iv25.49 (14)
N4—O3—Ba1—O1iv137.5 (2)C5—C6—Ba1—O3iv120.5 (6)
N4—O3—Ba1—O1−9.1 (2)O2—C6—Ba1—O382.67 (16)
N4—O3—Ba1—O2iv110.6 (2)O1—C6—Ba1—O3−115.60 (14)
N4—O3—Ba1—O240.7 (2)C5—C6—Ba1—O3−20.6 (6)
N4—O3—Ba1—O5iv−167.1 (2)O2—C6—Ba1—O1iv−1.61 (15)
N4—O3—Ba1—O514.0 (2)O1—C6—Ba1—O1iv160.12 (10)
N4—O3—Ba1—C6iv127.2 (2)C5—C6—Ba1—O1iv−104.9 (6)
N4—O3—Ba1—C616.0 (2)O2—C6—Ba1—O1−161.7 (2)
C6—O1—Ba1—O2ii134.00 (14)C5—C6—Ba1—O195.0 (6)
C6—O1—Ba1—O2iii171.74 (13)O2—C6—Ba1—O2iv−25.57 (16)
C6—O1—Ba1—O3iv−152.92 (15)O1—C6—Ba1—O2iv136.16 (13)
C6—O1—Ba1—O376.98 (16)C5—C6—Ba1—O2iv−128.8 (6)
C6—O1—Ba1—O1iv−30.33 (12)O1—C6—Ba1—O2161.7 (2)
C6—O1—Ba1—O2iv−45.12 (14)C5—C6—Ba1—O2−103.3 (6)
C6—O1—Ba1—O2−9.93 (12)O2—C6—Ba1—O5iv−95.07 (16)
C6—O1—Ba1—O5iv−117.80 (18)O1—C6—Ba1—O5iv66.65 (17)
C6—O1—Ba1—O561.31 (18)C5—C6—Ba1—O5iv161.7 (6)
C6—O1—Ba1—C6iv−44.47 (16)O2—C6—Ba1—O584.17 (19)
C6—O2—Ba1—O2ii−28.25 (17)O1—C6—Ba1—O5−114.11 (18)
Ba1i—O2—Ba1—O2ii180.000 (1)C5—C6—Ba1—O5−19.1 (6)
C6—O2—Ba1—O3iv46.66 (15)O2—C6—Ba1—C6iv−18.42 (12)
Ba1i—O2—Ba1—O3iv−105.09 (7)O1—C6—Ba1—C6iv143.31 (14)
C6—O2—Ba1—O3−107.18 (14)C5—C6—Ba1—C6iv−121.7 (6)
Ba1i—O2—Ba1—O3101.07 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4v0.862.292.854 (3)123
N1—H1···O5vi0.862.373.121 (3)146
N3—H3B···O1vii0.892.193.029 (2)158
N3—H3C···O3viii0.892.052.867 (3)153
N3—H3A···N2ii0.891.942.827 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O4i 0.862.292.854 (3)123
N1—H1⋯O5ii 0.862.373.121 (3)146
N3—H3B⋯O1iii 0.892.193.029 (2)158
N3—H3C⋯O3iv 0.892.052.867 (3)153
N3—H3A⋯N2v 0.891.942.827 (3)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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