Literature DB >> 24454029

catena-Poly[[di-aqua-bis-(μ3-5-carboxyl-ato-1H-pyrazole-3-carb-oxy-lic acid-κ(3) O (3):O (3);O (5))dilithium(I)] monohydrate].

Wojciech Starosta1, Janusz Leciejewicz1.   

Abstract

The basic structural unit of the title polymeric ribbon, {[Li2(C5H3N2O2)2(H2O)2]·H2O} n , is a centrosymmetric dinuclear complex in which the two Li(I) ions are bridged by two carboxyl-ato O atoms, to generate a centrosymmetric Li2O2 core. These are connected into a chain along [01-1] by carboxylic acid-carbonyl-O bonds. The tetra-hedral coordination of the Li(I) cation is completed by an aqua ligand. The carboxylic acid is involved in an intra-ribbon hydrogen bond. A solvate water molecule showing positional (50:50) disorder is observed. Polymeric ribbons along [01-1] are connected by O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds into a three-dimensional architecture.

Entities:  

Year:  2013        PMID: 24454029      PMCID: PMC3884253          DOI: 10.1107/S1600536813026408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the pyrazole-3,5-di­carb­oxy­lic acid hydrate, see: Ching et al. (2000 ▶).

Experimental

Crystal data

[Li2(C5H3N2O2)2(H2O)2]·H2O M = 378.12 Triclinic, a = 7.2610 (15) Å b = 7.5835 (15) Å c = 8.5751 (17) Å α = 68.38 (3)° β = 89.07 (3)° γ = 63.66 (3)° V = 387.19 (13) Å3 Z = 1 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.32 × 0.19 × 0.15 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.963, T max = 0.983 2319 measured reflections 2139 independent reflections 1631 reflections with I > 2σ(I) R int = 0.051 3 standard reflections every 200 reflections intensity decay: 3.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.139 S = 1.04 2139 reflections 148 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.43 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813026408/kp2459sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026408/kp2459Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li2(C5H3N2O2)2(H2O)2]·H2OZ = 1
Mr = 378.12F(000) = 194
Triclinic, P1Dx = 1.622 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2610 (15) ÅCell parameters from 25 reflections
b = 7.5835 (15) Åθ = 6–15°
c = 8.5751 (17) ŵ = 0.15 mm1
α = 68.38 (3)°T = 293 K
β = 89.07 (3)°Blocks, colourless
γ = 63.66 (3)°0.32 × 0.19 × 0.15 mm
V = 387.19 (13) Å3
Kuma KM-4 four-circle diffractometer1631 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
Graphite monochromatorθmax = 30.1°, θmin = 2.6°
profile data from ω/2θ scanh = −9→9
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→9
Tmin = 0.963, Tmax = 0.983l = −11→11
2319 measured reflections3 standard reflections every 200 reflections
2139 independent reflections intensity decay: 3.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0979P)2 + 0.0513P] where P = (Fo2 + 2Fc2)/3
2139 reflections(Δ/σ)max < 0.001
148 parametersΔρmax = 0.36 e Å3
4 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.31476 (15)0.19235 (16)0.41828 (13)0.0317 (3)
O3−0.04302 (15)1.06450 (16)−0.29666 (13)0.0330 (3)
H3−0.00661.1326−0.37790.050*
N2−0.12574 (16)0.83399 (17)−0.01238 (13)0.0229 (2)
O40.30113 (16)0.84618 (17)−0.21398 (14)0.0352 (3)
O2−0.02499 (16)0.33302 (17)0.43139 (13)0.0361 (3)
N1−0.11472 (16)0.68180 (16)0.13403 (13)0.0219 (2)
C50.08191 (17)0.51952 (18)0.19965 (15)0.0208 (3)
C40.20777 (18)0.56837 (19)0.08850 (15)0.0236 (3)
H40.35120.48840.09770.028*
C30.07157 (18)0.76495 (18)−0.04109 (14)0.0209 (3)
C70.12037 (19)0.8962 (2)−0.19328 (15)0.0230 (3)
C60.12709 (19)0.33371 (19)0.36231 (15)0.0218 (3)
Li10.4462 (4)−0.0115 (4)0.6522 (3)0.0310 (5)
O50.50246 (15)0.15574 (18)0.75835 (14)0.0331 (3)
O60.4576 (4)0.5520 (4)0.5472 (4)0.0493 (6)0.50
H1−0.225 (4)0.700 (4)0.173 (3)0.046 (6)*
H520.531 (5)0.254 (4)0.683 (4)0.070 (8)*
H510.630 (5)0.063 (5)0.832 (4)0.078 (9)*
H620.328 (4)0.602 (6)0.559 (9)0.14 (3)*0.50
H610.508 (15)0.57 (3)0.624 (19)0.38 (11)*0.50
U11U22U33U12U13U23
O10.0179 (4)0.0260 (5)0.0233 (4)0.0000 (4)0.0017 (3)0.0056 (4)
O30.0216 (5)0.0280 (5)0.0247 (5)−0.0075 (4)0.0030 (4)0.0095 (4)
N20.0175 (5)0.0181 (5)0.0188 (5)−0.0056 (4)0.0027 (3)0.0038 (4)
O40.0215 (5)0.0304 (5)0.0329 (5)−0.0091 (4)0.0097 (4)0.0044 (4)
O20.0212 (5)0.0292 (5)0.0296 (5)−0.0066 (4)0.0068 (4)0.0106 (4)
N10.0148 (5)0.0178 (5)0.0188 (5)−0.0047 (4)0.0032 (3)0.0034 (4)
C50.0156 (5)0.0166 (5)0.0182 (5)−0.0050 (4)0.0025 (4)0.0019 (4)
C40.0150 (5)0.0183 (5)0.0218 (5)−0.0034 (4)0.0040 (4)0.0023 (4)
C30.0173 (5)0.0175 (5)0.0178 (5)−0.0067 (4)0.0038 (4)0.0014 (4)
C70.0210 (6)0.0189 (5)0.0195 (5)−0.0082 (4)0.0047 (4)0.0006 (4)
C60.0172 (5)0.0173 (5)0.0177 (5)−0.0048 (4)0.0018 (4)0.0022 (4)
Li10.0219 (10)0.0268 (11)0.0278 (11)−0.0074 (9)0.0077 (8)0.0006 (9)
O50.0173 (4)0.0320 (5)0.0309 (5)−0.0070 (4)0.0031 (4)0.0012 (4)
O60.0359 (13)0.0414 (14)0.0517 (15)−0.0200 (11)0.0027 (10)0.0030 (11)
O1—C61.2578 (16)C5—C61.4816 (17)
O1—Li1i1.929 (3)C4—C31.3935 (17)
Li1—O11.948 (3)C4—H40.9300
O3—C71.2958 (17)C3—C71.4698 (16)
O3—H30.8200Li1—O4iii1.910 (3)
N2—N11.3298 (14)Li1—O1i1.930 (3)
N2—C31.3436 (16)Li1—O51.981 (3)
O4—C71.2240 (16)Li1—Li1i2.679 (5)
O4—Li1ii1.910 (3)O5—H520.89 (3)
O2—C61.2458 (15)O5—H510.93 (3)
N1—C51.3513 (16)O6—O6iv1.296 (6)
N1—H10.84 (2)O6—H620.87 (2)
C5—C41.3758 (16)O6—H610.86 (2)
C6—O1—Li1i141.01 (13)O3—C7—C3113.68 (11)
C6—O1—Li1128.30 (12)O2—C6—O1126.09 (12)
Li1i—O1—Li187.41 (12)O2—C6—C5116.69 (11)
C7—O3—H3109.5O1—C6—C5117.22 (12)
N1—N2—C3104.63 (10)O4iii—Li1—O1i114.50 (14)
C7—O4—Li1ii136.31 (12)O4iii—Li1—O1118.27 (14)
N2—N1—C5112.49 (10)O1i—Li1—O192.59 (12)
N2—N1—H1117.8 (16)O4iii—Li1—O5111.34 (13)
C5—N1—H1129.7 (16)O1i—Li1—O5114.31 (14)
N1—C5—C4106.99 (10)O1—Li1—O5104.38 (13)
N1—C5—C6120.84 (11)O4iii—Li1—Li1i130.02 (19)
C4—C5—C6132.17 (11)O1i—Li1—Li1i46.58 (9)
C5—C4—C3104.29 (10)O1—Li1—Li1i46.02 (8)
C5—C4—H4127.9O5—Li1—Li1i118.50 (16)
C3—C4—H4127.9Li1—O5—H52111.3 (17)
N2—C3—C4111.59 (11)Li1—O5—H51106.9 (16)
N2—C3—C7120.02 (11)H52—O5—H51101 (2)
C4—C3—C7128.37 (11)O6iv—O6—H62126 (6)
O4—C7—O3125.27 (12)O6iv—O6—H61133 (7)
O4—C7—C3121.04 (12)H62—O6—H61100 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2ii0.821.732.5159 (16)160
N1—H1···O5v0.84 (2)2.02 (2)2.8233 (17)161 (2)
O5—H52···O60.89 (3)1.94 (3)2.749 (3)150 (3)
O5—H52···O6iv0.89 (3)2.01 (3)2.851 (3)157 (3)
O5—H51···N2vi0.93 (3)1.89 (3)2.810 (2)169 (3)
O5—H51···O3vi0.93 (3)2.60 (3)3.1235 (16)116 (2)
O6—H62···O2v0.87 (2)2.03 (3)2.886 (3)167 (7)
Table 1

Selected bond lengths (Å)

Li1—O11.948 (3)
Li1—O4i 1.910 (3)
Li1—O1ii 1.930 (3)
Li1—O51.981 (3)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O2iii 0.821.732.5159 (16)160
N1—H1⋯O5iv 0.84 (2)2.02 (2)2.8233 (17)161 (2)
O5—H52⋯O60.89 (3)1.94 (3)2.749 (3)150 (3)
O5—H52⋯O6v 0.89 (3)2.01 (3)2.851 (3)157 (3)
O5—H51⋯N2vi 0.93 (3)1.89 (3)2.810 (2)169 (3)
O5—H51⋯O3vi 0.93 (3)2.60 (3)3.1235 (16)116 (2)
O6—H62⋯O2iv 0.87 (2)2.03 (3)2.886 (3)167 (7)

Symmetry codes: (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  3,5-Pyrazoledicarboxylic acid monohydrate

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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