Literature DB >> 24453075

New insights into the nature of observable reaction intermediates in cytochrome P450 NO reductase by using a combination of spectroscopy and quantum mechanics/molecular mechanics calculations.

Christoph Riplinger1, Eckhard Bill, Andreas Daiber, Volker Ullrich, Hirofumi Shoun, Frank Neese.   

Abstract

Cytochrome P450 NO reductase is an unusual member of the cytochrome P450 superfamily. It catalyzes the reduction of nitric oxide to nitrous oxide. The reaction intermediates were studied in detail by a combination of experimental and computational methods. They have been characterized experimentally by UV/Vis, EPR, Mössbauer, and MCD spectroscopy. In conjunction with quantum mechanics/molecular mechanics (QM/MM) calculations, we sought to characterize the resting state and the two detectable intermediates in detail and to elucidate the nature of the key intermediate I of the reaction. Six possible candidates were taken into account for the unknown key intermediate in the computational study, differing in protonation state and electronic structure. Two out of the six candidates could be identified as putative intermediates I with the help of the spectroscopic data: singlet diradicals Fe(III)-NHO(·)(-) and Fe(III)-NHOH(.). In a companion publication (C. Riplinger, F. Neese, ChemPhysChem- 2011, 12, 3192) we have used QM/MM models based on these structures and performed a kinetic simulation. The combination of these two studies shows the nature of the key intermediate to be the singlet diradical, Fe(III)-NHOH(·).
Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  enzymes; metalloenzymes; qm/mm calculations; spectroscopy; theoretical spectroscopy

Mesh:

Substances:

Year:  2014        PMID: 24453075     DOI: 10.1002/chem.201302443

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  7 in total

Review 1.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

2.  Over or under: hydride attack at the metal versus the coordinated nitrosyl ligand in ferric nitrosyl porphyrins.

Authors:  E G Abucayon; R L Khade; D R Powell; M J Shaw; Y Zhang; G B Richter-Addo
Journal:  Dalton Trans       Date:  2016-11-15       Impact factor: 4.390

Review 3.  The dual function of flavodiiron proteins: oxygen and/or nitric oxide reductases.

Authors:  Célia V Romão; João B Vicente; Patrícia T Borges; Carlos Frazão; Miguel Teixeira
Journal:  J Biol Inorg Chem       Date:  2016-01-14       Impact factor: 3.358

4.  Short-lived intermediate in N2O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography.

Authors:  Takashi Nomura; Tetsunari Kimura; Yusuke Kanematsu; Daichi Yamada; Keitaro Yamashita; Kunio Hirata; Go Ueno; Hironori Murakami; Tamao Hisano; Raika Yamagiwa; Hanae Takeda; Chai Gopalasingam; Ryota Kousaka; Sachiko Yanagisawa; Osami Shoji; Takashi Kumasaka; Masaki Yamamoto; Yu Takano; Hiroshi Sugimoto; Takehiko Tosha; Minoru Kubo; Yoshitsugu Shiro
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

5.  Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.

Authors:  Takehiko Tosha; Takashi Nomura; Takuma Nishida; Naoya Saeki; Kouta Okubayashi; Raika Yamagiwa; Michihiro Sugahara; Takanori Nakane; Keitaro Yamashita; Kunio Hirata; Go Ueno; Tetsunari Kimura; Tamao Hisano; Kazumasa Muramoto; Hitomi Sawai; Hanae Takeda; Eiichi Mizohata; Ayumi Yamashita; Yusuke Kanematsu; Yu Takano; Eriko Nango; Rie Tanaka; Osamu Nureki; Osami Shoji; Yuka Ikemoto; Hironori Murakami; Shigeki Owada; Kensuke Tono; Makina Yabashi; Masaki Yamamoto; Hideo Ago; So Iwata; Hiroshi Sugimoto; Yoshitsugu Shiro; Minoru Kubo
Journal:  Nat Commun       Date:  2017-11-17       Impact factor: 14.919

Review 6.  Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling.

Authors:  Christopher J Reed; Quan N Lam; Evan N Mirts; Yi Lu
Journal:  Chem Soc Rev       Date:  2021-03-01       Impact factor: 54.564

7.  Anharmonic Vibrational Analysis of Biomolecules and Solvated Molecules Using Hybrid QM/MM Computations.

Authors:  Kiyoshi Yagi; Kenta Yamada; Chigusa Kobayashi; Yuji Sugita
Journal:  J Chem Theory Comput       Date:  2019-02-21       Impact factor: 6.006

  7 in total

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