Literature DB >> 24448573

Strength in numbers: comparing vaccine signatures the modular way.

W Nicholas Haining1.   

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Year:  2014        PMID: 24448573     DOI: 10.1038/ni.2807

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   25.606


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  12 in total

1.  Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Authors:  Eran Segal; Michael Shapira; Aviv Regev; Dana Pe'er; David Botstein; Daphne Koller; Nir Friedman
Journal:  Nat Genet       Date:  2003-06       Impact factor: 38.330

Review 2.  The road to modularity.

Authors:  Günter P Wagner; Mihaela Pavlicev; James M Cheverud
Journal:  Nat Rev Genet       Date:  2007-12       Impact factor: 53.242

3.  Integrating genomic signatures for immunologic discovery.

Authors:  W Nicholas Haining; E John Wherry
Journal:  Immunity       Date:  2010-02-26       Impact factor: 31.745

4.  Cell type-specific gene expression differences in complex tissues.

Authors:  Shai S Shen-Orr; Robert Tibshirani; Purvesh Khatri; Dale L Bodian; Frank Staedtler; Nicholas M Perry; Trevor Hastie; Minnie M Sarwal; Mark M Davis; Atul J Butte
Journal:  Nat Methods       Date:  2010-03-07       Impact factor: 28.547

5.  Systems scale interactive exploration reveals quantitative and qualitative differences in response to influenza and pneumococcal vaccines.

Authors:  Gerlinde Obermoser; Scott Presnell; Kelly Domico; Hui Xu; Yuanyuan Wang; Esperanza Anguiano; Luann Thompson-Snipes; Rajaram Ranganathan; Brad Zeitner; Anna Bjork; David Anderson; Cate Speake; Emily Ruchaud; Jason Skinner; Laia Alsina; Mamta Sharma; Helene Dutartre; Alma Cepika; Elisabeth Israelsson; Phuong Nguyen; Quynh-Anh Nguyen; A Carson Harrod; Sandra M Zurawski; Virginia Pascual; Hideki Ueno; Gerald T Nepom; Charlie Quinn; Derek Blankenship; Karolina Palucka; Jacques Banchereau; Damien Chaussabel
Journal:  Immunity       Date:  2013-04-18       Impact factor: 31.745

6.  Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans.

Authors:  Troy D Querec; Rama S Akondy; Eva K Lee; Weiping Cao; Helder I Nakaya; Dirk Teuwen; Ali Pirani; Kim Gernert; Jiusheng Deng; Bruz Marzolf; Kathleen Kennedy; Haiyan Wu; Soumaya Bennouna; Herold Oluoch; Joseph Miller; Ricardo Z Vencio; Mark Mulligan; Alan Aderem; Rafi Ahmed; Bali Pulendran
Journal:  Nat Immunol       Date:  2008-11-23       Impact factor: 25.606

7.  PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

Authors:  Vamsi K Mootha; Cecilia M Lindgren; Karl-Fredrik Eriksson; Aravind Subramanian; Smita Sihag; Joseph Lehar; Pere Puigserver; Emma Carlsson; Martin Ridderstråle; Esa Laurila; Nicholas Houstis; Mark J Daly; Nick Patterson; Jill P Mesirov; Todd R Golub; Pablo Tamayo; Bruce Spiegelman; Eric S Lander; Joel N Hirschhorn; David Altshuler; Leif C Groop
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

8.  Systems biology of vaccination for seasonal influenza in humans.

Authors:  Helder I Nakaya; Jens Wrammert; Eva K Lee; Luigi Racioppi; Stephanie Marie-Kunze; W Nicholas Haining; Anthony R Means; Sudhir P Kasturi; Nooruddin Khan; Gui-Mei Li; Megan McCausland; Vibhu Kanchan; Kenneth E Kokko; Shuzhao Li; Rivka Elbein; Aneesh K Mehta; Alan Aderem; Kanta Subbarao; Rafi Ahmed; Bali Pulendran
Journal:  Nat Immunol       Date:  2011-07-10       Impact factor: 25.606

9.  Molecular signatures of antibody responses derived from a systems biology study of five human vaccines.

Authors:  Shuzhao Li; Nadine Rouphael; Sai Duraisingham; Sandra Romero-Steiner; Scott Presnell; Carl Davis; Daniel S Schmidt; Scott E Johnson; Andrea Milton; Gowrisankar Rajam; Sudhir Kasturi; George M Carlone; Charlie Quinn; Damien Chaussabel; A Karolina Palucka; Mark J Mulligan; Rafi Ahmed; David S Stephens; Helder I Nakaya; Bali Pulendran
Journal:  Nat Immunol       Date:  2013-12-15       Impact factor: 25.606

10.  Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.

Authors:  Ido Amit; Manuel Garber; Nicolas Chevrier; Ana Paula Leite; Yoni Donner; Thomas Eisenhaure; Mitchell Guttman; Jennifer K Grenier; Weibo Li; Or Zuk; Lisa A Schubert; Brian Birditt; Tal Shay; Alon Goren; Xiaolan Zhang; Zachary Smith; Raquel Deering; Rebecca C McDonald; Moran Cabili; Bradley E Bernstein; John L Rinn; Alex Meissner; David E Root; Nir Hacohen; Aviv Regev
Journal:  Science       Date:  2009-09-03       Impact factor: 47.728

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