Literature DB >> 24448568

Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology.

Felix Meissner1, Matthias Mann1.   

Abstract

Mesh：

Year:  2014        PMID： 24448568     DOI： 10.1038/ni.2781

Source DB:  PubMed          Journal:  Nat Immunol        ISSN： 1529-2908            Impact factor:   25.606


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  39 in total

Review 1.  Trends in ultrasensitive proteomics.

Authors:  A F Maarten Altelaar; Albert J R Heck
Journal:  Curr Opin Chem Biol       Date:  2012-01-07       Impact factor: 8.822

Review 2.  Technologies for MHC class I immunoproteomics.

Authors:  Rieuwert Hoppes; Reggy Ekkebus; Ton N M Schumacher; Huib Ovaa
Journal:  J Proteomics       Date:  2010-06-08       Impact factor: 4.044

Review 3.  Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book.

Authors:  Rovshan G Sadygov; Daniel Cociorva; John R Yates
Journal:  Nat Methods       Date:  2004-12       Impact factor: 28.547

4.  Reporting protein identification data: the next generation of guidelines.

Authors:  Ralph A Bradshaw; Alma L Burlingame; Steven Carr; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2006-05       Impact factor: 5.911

Review 5.  Analysis of protein complexes using mass spectrometry.

Authors:  Anne-Claude Gingras; Matthias Gstaiger; Brian Raught; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2007-08       Impact factor: 94.444

6.  Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline.

Authors:  David C Trudgian; Gabriela Ridlova; Roman Fischer; Mukram M Mackeen; Nicola Ternette; Oreste Acuto; Benedikt M Kessler; Benjamin Thomas
Journal:  Proteomics       Date:  2011-06-08       Impact factor: 3.984

Review 7.  Contemporary positional proteomics strategies to study protein processing.

Authors:  Kim Plasman; Petra Van Damme; Kris Gevaert
Journal:  Curr Opin Chem Biol       Date:  2013-01-03       Impact factor: 8.822

8.  Mapping a dynamic innate immunity protein interaction network regulating type I interferon production.

Authors:  Shitao Li; Lingyan Wang; Michael Berman; Young-Yun Kong; Martin E Dorf
Journal:  Immunity       Date:  2011-09-08       Impact factor: 31.745

9.  The phagosomal proteome in interferon-gamma-activated macrophages.

Authors:  Matthias Trost; Luc English; Sébastien Lemieux; Mathieu Courcelles; Michel Desjardins; Pierre Thibault
Journal:  Immunity       Date:  2009-01-16       Impact factor: 31.745

10.  QuaNCAT: quantitating proteome dynamics in primary cells.

Authors:  Andrew J M Howden; Vincent Geoghegan; Kristin Katsch; Georgios Efstathiou; Bhaskar Bhushan; Omar Boutureira; Benjamin Thomas; David C Trudgian; Benedikt M Kessler; Daniela C Dieterich; Benjamin G Davis; Oreste Acuto
Journal:  Nat Methods       Date:  2013-03-10       Impact factor: 28.547
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  32 in total

1.  Label-Free Quantitative Proteomics Distinguishes General and Site-Specific Host Responses to Pseudomonas aeruginosa Infection at the Ocular Surface.

Authors:  Jason Yeung; Mihaela Gadjeva; Jennifer Geddes-McAlister
Journal:  Proteomics       Date:  2020-01-07       Impact factor: 3.984

2.  Social network architecture of human immune cells unveiled by quantitative proteomics.

Authors:  Jan C Rieckmann; Roger Geiger; Daniel Hornburg; Tobias Wolf; Ksenya Kveler; David Jarrossay; Federica Sallusto; Shai S Shen-Orr; Antonio Lanzavecchia; Matthias Mann; Felix Meissner
Journal:  Nat Immunol       Date:  2017-03-06       Impact factor: 25.606

3.  A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation.

Authors:  Anke Graessel; Stefanie M Hauck; Christine von Toerne; Edda Kloppmann; Tatyana Goldberg; Herwig Koppensteiner; Michael Schindler; Bettina Knapp; Linda Krause; Katharina Dietz; Carsten B Schmidt-Weber; Kathrin Suttner
Journal:  Mol Cell Proteomics       Date:  2015-05-19       Impact factor: 5.911

4.  Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.

Authors:  Kristin E Burnum-Johnson; Song Nie; Cameron P Casey; Matthew E Monroe; Daniel J Orton; Yehia M Ibrahim; Marina A Gritsenko; Therese R W Clauss; Anil K Shukla; Ronald J Moore; Samuel O Purvine; Tujin Shi; Weijun Qian; Tao Liu; Erin S Baker; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2016-09-25       Impact factor: 5.911

5.  Immunogenetic factors driving formation of ultralong VH CDR3 in Bos taurus antibodies.

Authors:  Thaddeus C Deiss; Melissa Vadnais; Feng Wang; Patricia L Chen; Ali Torkamani; Waithaka Mwangi; Marie-Paule Lefranc; Michael F Criscitiello; Vaughn V Smider
Journal:  Cell Mol Immunol       Date:  2017-12-04       Impact factor: 11.530

6.  Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages.

Authors:  Sandra Söderholm; Denis E Kainov; Tiina Öhman; Oxana V Denisova; Bert Schepens; Evgeny Kulesskiy; Susumu Y Imanishi; Garry Corthals; Petteri Hintsanen; Tero Aittokallio; Xavier Saelens; Sampsa Matikainen; Tuula A Nyman
Journal:  Mol Cell Proteomics       Date:  2016-08-02       Impact factor: 5.911

Review 7.  Recent advances in quantitative and chemical proteomics for autophagy studies.

Authors:  Yin-Kwan Wong; Jianbin Zhang; Zi-Chun Hua; Qingsong Lin; Han-Ming Shen; Jigang Wang
Journal:  Autophagy       Date:  2017-08-18       Impact factor: 16.016

8.  A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function.

Authors:  Stefanie Kälin; Maike Becker; Verena B Ott; Isabelle Serr; Fabian Hosp; Mohammad M H Mollah; Susanne Keipert; Daniel Lamp; Francoise Rohner-Jeanrenaud; Victoria K Flynn; Martin G Scherm; Lucas F R Nascimento; Katharina Gerlach; Vanessa Popp; Sarah Dietzen; Tobias Bopp; Purna Krishnamurthy; Mark H Kaplan; Manuel Serrano; Stephen C Woods; Philipp Tripal; Ralf Palmisano; Martin Jastroch; Matthias Blüher; Christian Wolfrum; Benno Weigmann; Anette-Gabriele Ziegler; Matthias Mann; Matthias H Tschöp; Carolin Daniel
Journal:  Cell Metab       Date:  2017-09-05       Impact factor: 27.287

9.  Quantitative Proteomic Approach Identifies Vpr Binding Protein as Novel Host Factor Supporting Influenza A Virus Infections in Human Cells.

Authors:  Anne Sadewasser; Katharina Paki; Katrin Eichelbaum; Boris Bogdanow; Sandra Saenger; Matthias Budt; Markus Lesch; Klaus-Peter Hinz; Andreas Herrmann; Thomas F Meyer; Alexander Karlas; Matthias Selbach; Thorsten Wolff
Journal:  Mol Cell Proteomics       Date:  2017-03-13       Impact factor: 5.911

10.  Supernatant protein biomarkers of red blood cell storage hemolysis as determined through an absolute quantification proteomics technology.

Authors:  Angelo D'Alessandro; Monika Dzieciatkowska; Ryan C Hill; Kirk C Hansen
Journal:  Transfusion       Date:  2016-01-26       Impact factor: 3.157
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