Literature DB >> 24432145

Design-driven, multi-use research agendas to enable applied synthetic biology for global health.

James M Carothers1.   

Abstract

Many of the synthetic biological devices, pathways and systems that can be engineered are multi-use, in the sense that they could be used both for commercially-important applications and to help meet global health needs. The on-going development of models and simulation tools for assembling component parts into functionally-complex devices and systems will enable successful engineering with much less trial-and-error experimentation and laboratory infrastructure. As illustrations, I draw upon recent examples from my own work and the broader Keasling research group at the University of California Berkeley and the Joint BioEnergy Institute, of which I was formerly a part. By combining multi-use synthetic biology research agendas with advanced computer-aided design tool creation, it may be possible to more rapidly engineer safe and effective synthetic biology technologies that help address a wide range of global health problems.

Keywords:  Computer-aided design; Model-driven design and engineering

Year:  2013        PMID: 24432145      PMCID: PMC3740099          DOI: 10.1007/s11693-013-9118-2

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  38 in total

1.  Model-driven engineering of RNA devices to quantitatively program gene expression.

Authors:  James M Carothers; Jonathan A Goler; Darmawi Juminaga; Jay D Keasling
Journal:  Science       Date:  2011-12-23       Impact factor: 47.728

Review 2.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

Review 3.  Manufacturing molecules through metabolic engineering.

Authors:  Jay D Keasling
Journal:  Science       Date:  2010-12-03       Impact factor: 47.728

Review 4.  Point-of-care diagnostics for global health.

Authors:  Paul Yager; Gonzalo J Domingo; John Gerdes
Journal:  Annu Rev Biomed Eng       Date:  2008       Impact factor: 9.590

5.  Functional information and the emergence of biocomplexity.

Authors:  Robert M Hazen; Patrick L Griffin; James M Carothers; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

6.  Identification and analysis of genes from Streptomyces pristinaespiralis encoding enzymes involved in the biosynthesis of the 4-dimethylamino-L-phenylalanine precursor of pristinamycin I.

Authors:  V Blanc; P Gil; N Bamas-Jacques; S Lorenzon; M Zagorec; J Schleuniger; D Bisch; F Blanche; L Debussche; J Crouzet; D Thibaut
Journal:  Mol Microbiol       Date:  1997-01       Impact factor: 3.501

7.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

Review 8.  Biosensors and their applications in microbial metabolic engineering.

Authors:  Fuzhong Zhang; Jay Keasling
Journal:  Trends Microbiol       Date:  2011-06-12       Impact factor: 17.079

9.  j5 DNA assembly design automation software.

Authors:  Nathan J Hillson; Rafael D Rosengarten; Jay D Keasling
Journal:  ACS Synth Biol       Date:  2011-12-20       Impact factor: 5.110

Review 10.  Development of a combined biological and chemical process for production of industrial aromatics from renewable resources.

Authors:  F Sima Sariaslani
Journal:  Annu Rev Microbiol       Date:  2007       Impact factor: 15.500

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  6 in total

1.  Governing synthetic biology for global health through responsible research and innovation.

Authors:  Conor M W Douglas; Dirk Stemerding
Journal:  Syst Synth Biol       Date:  2013-07-20

2.  Do-it-yourself biology: challenges and promises for an open science and technology movement.

Authors:  Thomas Landrain; Morgan Meyer; Ariel Martin Perez; Remi Sussan
Journal:  Syst Synth Biol       Date:  2013-08-02

Review 3.  Prospects for engineering dynamic CRISPR-Cas transcriptional circuits to improve bioproduction.

Authors:  Jason Fontana; William E Voje; Jesse G Zalatan; James M Carothers
Journal:  J Ind Microbiol Biotechnol       Date:  2018-05-08       Impact factor: 3.346

4.  Challenges for the European governance of synthetic biology for human health.

Authors:  Conor Mw Douglas; Dirk Stemerding
Journal:  Life Sci Soc Policy       Date:  2014-03-20

5.  The synthetic biology puzzle: a qualitative study on public reflections towards a governance framework.

Authors:  Johannes Starkbaum; Matthias Braun; Peter Dabrock
Journal:  Syst Synth Biol       Date:  2015-10-05

Review 6.  Grand challenges in space synthetic biology.

Authors:  Amor A Menezes; Michael G Montague; John Cumbers; John A Hogan; Adam P Arkin
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

  6 in total

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