Literature DB >> 24427075

(E)-3-{[([1,1'-Biphen-yl]-3-ylmeth-yl)iminium-yl]meth-yl}-6,8-di-chloro-2H-chromen-4-olate.

Yoshinobu Ishikawa1, Yuya Motohashi1.   

Abstract

In the crystal of the title compound, C23H17Cl2NO2, the H atom of the -OH group is transferred to the N atom of the imine, forming a zwitterion. This results in a six-membered intra-molecular O⋯H-N hydrogen-bonded ring, rather than that formed with an O-H⋯N hydrogen bond. The dihedral angle between the rings of the biphenyl unit is 13.88 (10)°. In the crystal, mol-ecules are linked by N-H⋯O and C-H⋯O inter-actions.

Entities:  

Year:  2013        PMID: 24427075      PMCID: PMC3884411          DOI: 10.1107/S160053681302285X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological propertries of similar structures, see: Khan et al. (2009 ▶); Tu et al. (2013 ▶). For related structures, see: Benaouida et al. (2013 ▶); Małecka & Budzisz (2006 ▶); Ishikawa & Motohashi (2013a ▶,b ▶).

Experimental

Crystal data

C23H17Cl2NO2 M = 410.30 Monoclinic, a = 17.996 (8) Å b = 9.127 (6) Å c = 11.649 (7) Å β = 102.00 (4)° V = 1871.5 (19) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 100 K 0.40 × 0.25 × 0.25 mm

Data collection

Rigaku AFC-7R diffractometer 5086 measured reflections 4254 independent reflections 3499 reflections with F 2 > 2σ(F 2) R int = 0.090 3 standard reflections every 150 reflections intensity decay: −0.7%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.115 S = 1.01 4254 reflections 253 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.69 e Å−3 Data collection: WinAFC (Rigaku, 1999 ▶); cell refinement: WinAFC; data reduction: WinAFC; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalStructure (Rigaku, 2010 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablock(s) General, I. DOI: 10.1107/S160053681302285X/hb7114sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302285X/hb7114Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H17Cl2NO2F(000) = 848.00
Mr = 410.30Dx = 1.456 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 17.996 (8) Åθ = 15.7–17.5°
b = 9.127 (6) ŵ = 0.37 mm1
c = 11.649 (7) ÅT = 100 K
β = 102.00 (4)°Block, yellow
V = 1871.5 (19) Å30.40 × 0.25 × 0.25 mm
Z = 4
Rigaku AFC-7R diffractometerθmax = 27.5°
ω–2θ scansh = −13→23
5086 measured reflectionsk = 0→11
4254 independent reflectionsl = −15→14
3499 reflections with F2 > 2σ(F2)3 standard reflections every 150 reflections
Rint = 0.090 intensity decay: −0.7%
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0505P)2 + 2.0486P] where P = (Fo2 + 2Fc2)/3
4254 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.69 e Å3
Primary atom site location: structure-invariant direct methods
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Cl10.80025 (2)0.62806 (6)0.19342 (4)0.02502 (13)
Cl20.86878 (3)1.10381 (7)0.46874 (5)0.03284 (15)
O30.64501 (7)0.69744 (16)0.20224 (12)0.0213 (3)
O40.57129 (8)0.98666 (17)0.42256 (13)0.0251 (3)
N50.42765 (9)0.8598 (2)0.34156 (15)0.0228 (4)
C60.32275 (10)0.7096 (3)0.39377 (16)0.0189 (4)
C70.82564 (10)0.8699 (3)0.32979 (16)0.0193 (4)
C80.59004 (10)0.9131 (3)0.34336 (17)0.0203 (4)
C90.67152 (10)0.9075 (2)0.33128 (16)0.0181 (4)
C100.69432 (10)0.7945 (2)0.26495 (15)0.0174 (4)
C110.77212 (10)0.7748 (2)0.26781 (15)0.0177 (4)
C120.13573 (10)0.5180 (3)0.40462 (15)0.0188 (4)
C130.24573 (10)0.6722 (3)0.37163 (16)0.0192 (4)
C140.34775 (11)0.5149 (3)0.53488 (17)0.0244 (4)
C150.08092 (10)0.6104 (3)0.33894 (17)0.0216 (4)
C16−0.01848 (11)0.4374 (3)0.35077 (18)0.0271 (5)
C170.53989 (10)0.8232 (3)0.26182 (17)0.0206 (4)
C180.11133 (11)0.3843 (3)0.44211 (17)0.0240 (4)
C190.21812 (10)0.5583 (2)0.43059 (15)0.0174 (4)
C200.72538 (10)1.0033 (3)0.39433 (16)0.0199 (4)
C210.27091 (11)0.4809 (3)0.51376 (17)0.0234 (4)
C220.37403 (10)0.6290 (3)0.47505 (16)0.0211 (4)
C230.80161 (10)0.9837 (3)0.39174 (16)0.0209 (4)
C240.03495 (12)0.3446 (3)0.41568 (18)0.0278 (5)
C250.56977 (10)0.7595 (3)0.16214 (17)0.0214 (4)
C260.00452 (11)0.5703 (3)0.31196 (18)0.0254 (4)
C270.46441 (10)0.8011 (3)0.26553 (17)0.0213 (4)
C280.34598 (10)0.8407 (3)0.32960 (19)0.0245 (4)
H50.45310.91150.40060.0273*
H70.87810.85730.32980.0231*
H130.21110.72630.31450.0231*
H140.38270.45970.59080.0293*
H150.09600.70190.31230.0259*
H16−0.07060.41040.33290.0326*
H180.14750.31940.48640.0288*
H200.71011.08100.43850.0239*
H210.25390.40360.55650.0280*
H220.42670.65170.48970.0253*
H240.01950.25340.44230.0334*
H25A0.53470.68210.12360.0256*
H25B0.57200.83690.10340.0256*
H26−0.03190.63420.26680.0305*
H270.43620.73760.20790.0255*
H28A0.32260.83120.24520.0294*
H28B0.32500.93020.35890.0294*
U11U22U33U12U13U23
Cl10.0160 (2)0.0271 (3)0.0341 (3)−0.00033 (17)0.01027 (17)−0.00751 (19)
Cl20.0235 (3)0.0419 (4)0.0342 (3)−0.0135 (2)0.00837 (19)−0.0155 (3)
O30.0121 (6)0.0221 (7)0.0293 (7)−0.0002 (5)0.0033 (5)−0.0028 (6)
O40.0202 (7)0.0294 (8)0.0273 (7)0.0023 (6)0.0089 (6)−0.0024 (6)
N50.0145 (7)0.0272 (9)0.0273 (8)−0.0018 (7)0.0056 (6)0.0010 (7)
C60.0147 (8)0.0237 (10)0.0196 (8)−0.0003 (7)0.0067 (7)−0.0000 (7)
C70.0139 (8)0.0257 (10)0.0186 (8)−0.0009 (7)0.0043 (7)0.0031 (7)
C80.0158 (8)0.0216 (9)0.0253 (9)0.0025 (7)0.0084 (7)0.0053 (8)
C90.0153 (8)0.0213 (9)0.0188 (8)0.0012 (7)0.0058 (7)0.0042 (7)
C100.0132 (8)0.0208 (9)0.0184 (8)−0.0003 (7)0.0036 (6)0.0038 (7)
C110.0146 (8)0.0213 (9)0.0186 (8)0.0025 (7)0.0069 (7)0.0016 (7)
C120.0170 (8)0.0246 (10)0.0160 (8)−0.0036 (7)0.0061 (7)−0.0036 (7)
C130.0156 (8)0.0226 (10)0.0204 (9)0.0011 (7)0.0058 (7)0.0017 (7)
C140.0211 (9)0.0314 (11)0.0195 (9)0.0023 (8)0.0015 (7)0.0035 (8)
C150.0191 (9)0.0237 (10)0.0230 (9)−0.0020 (8)0.0066 (7)−0.0003 (8)
C160.0188 (9)0.0342 (12)0.0302 (10)−0.0083 (8)0.0090 (8)−0.0097 (9)
C170.0149 (8)0.0227 (10)0.0247 (9)0.0019 (7)0.0050 (7)0.0045 (8)
C180.0230 (9)0.0276 (11)0.0222 (9)−0.0031 (8)0.0066 (7)0.0004 (8)
C190.0158 (8)0.0219 (9)0.0156 (8)−0.0009 (7)0.0058 (7)−0.0021 (7)
C200.0202 (9)0.0229 (9)0.0178 (8)0.0001 (8)0.0068 (7)0.0002 (7)
C210.0231 (9)0.0276 (11)0.0202 (9)−0.0036 (8)0.0061 (7)0.0043 (8)
C220.0148 (8)0.0273 (10)0.0210 (9)−0.0014 (8)0.0035 (7)−0.0029 (8)
C230.0188 (9)0.0260 (10)0.0180 (8)−0.0064 (8)0.0041 (7)0.0000 (7)
C240.0279 (11)0.0287 (11)0.0296 (10)−0.0113 (9)0.0122 (8)−0.0035 (9)
C250.0126 (8)0.0242 (10)0.0264 (9)−0.0002 (7)0.0019 (7)0.0004 (8)
C260.0172 (9)0.0317 (11)0.0276 (10)−0.0009 (8)0.0050 (8)−0.0027 (9)
C270.0171 (9)0.0222 (10)0.0243 (9)−0.0014 (7)0.0037 (7)0.0048 (8)
C280.0128 (8)0.0277 (11)0.0338 (11)0.0017 (8)0.0069 (7)0.0087 (9)
Cl1—C111.727 (3)C16—C241.383 (3)
Cl2—C231.737 (2)C16—C261.387 (4)
O3—C101.355 (3)C17—C251.495 (3)
O3—C251.452 (3)C17—C271.383 (3)
O4—C81.243 (3)C18—C241.393 (3)
N5—C271.324 (3)C19—C211.399 (3)
N5—C281.458 (3)C20—C231.390 (3)
C6—C131.398 (3)N5—H50.880
C6—C221.388 (3)C7—H70.950
C6—C281.515 (3)C13—H130.950
C7—C111.383 (3)C14—H140.950
C7—C231.384 (3)C15—H150.950
C8—C91.503 (3)C16—H160.950
C8—C171.426 (3)C18—H180.950
C9—C101.400 (3)C20—H200.950
C9—C201.395 (3)C21—H210.950
C10—C111.405 (3)C22—H220.950
C12—C151.398 (3)C24—H240.950
C12—C181.397 (3)C25—H25A0.990
C12—C191.496 (3)C25—H25B0.990
C13—C191.393 (3)C26—H260.950
C14—C211.388 (3)C27—H270.950
C14—C221.390 (3)C28—H28A0.990
C15—C261.394 (3)C28—H28B0.990
C10—O3—C25112.38 (16)C15—C26—C16120.20 (19)
C27—N5—C28121.46 (17)N5—C27—C17126.35 (18)
C13—C6—C22119.33 (19)N5—C28—C6115.05 (16)
C13—C6—C28117.78 (16)C27—N5—H5119.284
C22—C6—C28122.86 (17)C28—N5—H5119.257
C11—C7—C23118.94 (18)C11—C7—H7120.532
O4—C8—C9120.57 (17)C23—C7—H7120.528
O4—C8—C17124.98 (18)C6—C13—H13118.915
C9—C8—C17114.38 (18)C19—C13—H13118.918
C8—C9—C10118.70 (17)C21—C14—H14119.697
C8—C9—C20120.93 (18)C22—C14—H14119.698
C10—C9—C20120.04 (18)C12—C15—H15119.481
O3—C10—C9123.01 (17)C26—C15—H15119.484
O3—C10—C11117.81 (17)C24—C16—H16120.227
C9—C10—C11119.09 (16)C26—C16—H16120.219
Cl1—C11—C7120.24 (15)C12—C18—H18119.399
Cl1—C11—C10118.81 (14)C24—C18—H18119.395
C7—C11—C10120.95 (18)C9—C20—H20120.358
C15—C12—C18117.77 (17)C23—C20—H20120.373
C15—C12—C19121.26 (18)C14—C21—H21119.425
C18—C12—C19120.95 (17)C19—C21—H21119.422
C6—C13—C19122.17 (17)C6—C22—H22120.266
C21—C14—C22120.61 (18)C14—C22—H22120.267
C12—C15—C26121.0 (2)C16—C24—H24119.886
C24—C16—C26119.55 (19)C18—C24—H24119.877
C8—C17—C25117.46 (17)O3—C25—H25A109.370
C8—C17—C27123.6 (2)O3—C25—H25B109.364
C25—C17—C27118.80 (17)C17—C25—H25A109.360
C12—C18—C24121.21 (19)C17—C25—H25B109.359
C12—C19—C13121.59 (16)H25A—C25—H25B107.995
C12—C19—C21121.14 (18)C15—C26—H26119.894
C13—C19—C21117.25 (17)C16—C26—H26119.907
C9—C20—C23119.27 (19)N5—C27—H27116.830
C14—C21—C19121.2 (2)C17—C27—H27116.823
C6—C22—C14119.47 (18)N5—C28—H28A108.504
Cl2—C23—C7118.91 (15)N5—C28—H28B108.510
Cl2—C23—C20119.46 (16)C6—C28—H28A108.504
C7—C23—C20121.62 (18)C6—C28—H28B108.506
C16—C24—C18120.2 (3)H28A—C28—H28B107.520
O3—C25—C17111.33 (15)
C10—O3—C25—C17−53.6 (2)C15—C12—C18—H18179.6
C10—O3—C25—H25A−174.6C18—C12—C15—C260.1 (3)
C10—O3—C25—H25B67.3C18—C12—C15—H15−179.9
C25—O3—C10—C929.1 (3)C15—C12—C19—C13−13.5 (3)
C25—O3—C10—C11−154.42 (15)C15—C12—C19—C21167.82 (17)
C27—N5—C28—C691.3 (3)C19—C12—C15—C26178.03 (16)
C27—N5—C28—H28A−30.5C19—C12—C15—H15−2.0
C27—N5—C28—H28B−147.0C18—C12—C19—C13164.43 (17)
C28—N5—C27—C17173.51 (17)C18—C12—C19—C21−14.3 (3)
C28—N5—C27—H27−6.5C19—C12—C18—C24−178.38 (16)
H5—N5—C27—C17−6.5C19—C12—C18—H181.6
H5—N5—C27—H27173.5C6—C13—C19—C12−179.00 (16)
H5—N5—C28—C6−88.7C6—C13—C19—C21−0.3 (3)
H5—N5—C28—H28A149.5H13—C13—C19—C121.0
H5—N5—C28—H28B33.0H13—C13—C19—C21179.7
C13—C6—C22—C14−1.5 (3)C21—C14—C22—C60.2 (3)
C13—C6—C22—H22178.6C21—C14—C22—H22−179.8
C22—C6—C13—C191.5 (3)C22—C14—C21—C191.1 (3)
C22—C6—C13—H13−178.5C22—C14—C21—H21−178.9
C13—C6—C28—N5−170.51 (17)H14—C14—C21—C19−178.9
C13—C6—C28—H28A−48.8H14—C14—C21—H211.1
C13—C6—C28—H28B67.8H14—C14—C22—C6−179.8
C28—C6—C13—C19−176.64 (17)H14—C14—C22—H220.2
C28—C6—C13—H133.4C12—C15—C26—C160.4 (3)
C22—C6—C28—N511.4 (3)C12—C15—C26—H26−179.6
C22—C6—C28—H28A133.1H15—C15—C26—C16−179.6
C22—C6—C28—H28B−110.3H15—C15—C26—H260.4
C28—C6—C22—C14176.60 (17)C24—C16—C26—C15−0.4 (4)
C28—C6—C22—H22−3.4C24—C16—C26—H26179.5
C11—C7—C23—Cl2−179.57 (15)C26—C16—C24—C180.1 (4)
C11—C7—C23—C200.9 (3)C26—C16—C24—H24−179.9
C23—C7—C11—Cl1−177.89 (15)H16—C16—C24—C18−179.9
C23—C7—C11—C101.5 (3)H16—C16—C24—H240.1
H7—C7—C11—Cl12.1H16—C16—C26—C15179.6
H7—C7—C11—C10−178.5H16—C16—C26—H26−0.5
H7—C7—C23—Cl20.4C8—C17—C25—O345.8 (3)
H7—C7—C23—C20−179.1C8—C17—C25—H25A166.8
O4—C8—C9—C10162.18 (17)C8—C17—C25—H25B−75.2
O4—C8—C9—C20−11.3 (3)C8—C17—C27—N51.2 (4)
O4—C8—C17—C25171.54 (17)C8—C17—C27—H27−178.8
O4—C8—C17—C27−3.7 (3)C25—C17—C27—N5−173.96 (17)
C9—C8—C17—C25−11.6 (3)C25—C17—C27—H276.0
C9—C8—C17—C27173.26 (16)C27—C17—C25—O3−138.79 (17)
C17—C8—C9—C10−14.9 (3)C27—C17—C25—H25A−17.8
C17—C8—C9—C20171.67 (16)C27—C17—C25—H25B100.2
C8—C9—C10—O36.2 (3)C12—C18—C24—C160.3 (3)
C8—C9—C10—C11−170.28 (15)C12—C18—C24—H24−179.7
C8—C9—C20—C23172.43 (15)H18—C18—C24—C16−179.7
C8—C9—C20—H20−7.6H18—C18—C24—H240.3
C10—C9—C20—C23−0.9 (3)C12—C19—C21—C14177.69 (16)
C10—C9—C20—H20179.1C12—C19—C21—H21−2.3
C20—C9—C10—O3179.67 (16)C13—C19—C21—C14−1.1 (3)
C20—C9—C10—C113.2 (3)C13—C19—C21—H21178.9
O3—C10—C11—Cl1−0.8 (3)C9—C20—C23—Cl2179.29 (15)
O3—C10—C11—C7179.83 (14)C9—C20—C23—C7−1.2 (3)
C9—C10—C11—Cl1175.86 (14)H20—C20—C23—Cl2−0.7
C9—C10—C11—C7−3.5 (3)H20—C20—C23—C7178.8
C15—C12—C18—C24−0.4 (3)
D—H···AD—HH···AD···AD—H···A
N5—H5···O40.882.202.811 (3)126
N5—H5···O4i0.882.383.081 (3)137
C25—H25A···O4ii0.992.593.546 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N5—H5⋯O40.882.202.811 (3)126
N5—H5⋯O4i 0.882.383.081 (3)137
C25—H25A⋯O4ii 0.992.593.546 (4)164

Symmetry codes: (i) ; (ii) .

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3.  Schiff bases of 3-formylchromone as thymidine phosphorylase inhibitors.

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4.  1-(4-Hy-droxy-phen-yl)-2-(2-oxidonaphthalen-1-yl)diazen-1-ium methanol hemisolvate.

Authors:  Mohamed Amine Benaouida; Souheyla Chetioui; Salah Eddine Bouaoud
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11

5.  3-[(E)-(Benzyl-iminiumyl)meth-yl]-6,8-di-chloro-2H-chromen-4-olate.

Authors:  Yoshinobu Ishikawa; Yuya Motohashi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-10

6.  (E)-6,8-Di-chloro-3-{[(naphthalen-1-ylmeth-yl)iminiumyl]meth-yl}-2H-chromen-4-olate.

Authors:  Yoshinobu Ishikawa; Yuya Motohashi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-10
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  1 in total

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