Literature DB >> 24427061

2-Hy-droxy-methyl-1,3-dimethyl-1H-benzimidazol-3-ium iodide.

Mohamed El Hadi Said1, Sofiane Bouacida1, Hocine Merazig1, Ali Belfaitah2, Aissa Chibani1, Abdelmalek Bouraiou2.   

Abstract

In the cation of the title compound, C10H13N2O(+)·I(-), all non-H atoms, with the exception of the O atom, are essentially coplanar, with a maximum deviation of 0.04 (1) Å. In the crystal, the cations and anions are arranged in layers parallel to (100). The cations are connected to the anions via an O-H⋯I hydrogen bond and there are significant π-π stacking inter-actions between cation layers, with centroid-centroid distances in the range 3.606 (5)-3.630 (5) Å. A weak intra-molecular C-H⋯O hydrogen bond is also observed. The crystal studied was an inversion twin with refined components of 0.52 (5) and 0.48 (5).

Entities:  

Year:  2013        PMID: 24427061      PMCID: PMC3884380          DOI: 10.1107/S1600536813022307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of this class of compounds, see: Tonelli et al. (2010 ▶); Preston (1974 ▶); Hazelton et al. (1995 ▶); Kucukguzel et al. (2001 ▶); Islam et al. (1991 ▶); Li et al. (2003 ▶); Abboud et al. (2006 ▶). For our previous work on imidazole derivatives, see: Bahnous et al. (2012 ▶); Zama et al. (2013 ▶); Chelghoum et al. (2011 ▶).

Experimental

Crystal data

C10H13N2O+·I− M = 304.12 Orthorhombic, a = 6.5690 (7) Å b = 10.1342 (10) Å c = 16.9357 (19) Å V = 1127.4 (2) Å3 Z = 4 Mo Kα radiation μ = 2.81 mm−1 T = 150 K 0.14 × 0.13 × 0.12 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.647, T max = 0.747 10018 measured reflections 4002 independent reflections 3243 reflections with I > 2σ(I) R int = 0.02

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.068 S = 1.05 4002 reflections 131 parameters 1 restraint H-atom parameters constrained Δρmax = 1.34 e Å−3 Δρmin = −0.72 e Å−3 Absolute structure: Flack (1983 ▶), 1518 Friedel pairs Absolute structure parameter: 0.48 (5) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and CRYSCAL (T. Roisnel, local program). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813022307/lh5638sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813022307/lh5638Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813022307/lh5638Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13N2O+·IF(000) = 592
Mr = 304.12Dx = 1.792 Mg m3
Orthorhombic, P21nbMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2bc 2aCell parameters from 4274 reflections
a = 6.5690 (7) Åθ = 2.4–34.0°
b = 10.1342 (10) ŵ = 2.81 mm1
c = 16.9357 (19) ÅT = 150 K
V = 1127.4 (2) Å3Cube, colorless
Z = 40.14 × 0.13 × 0.12 mm
Bruker APEXII CCD diffractometer3243 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.02
CCD rotation images, thin slices scansθmax = 34.2°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −9→10
Tmin = 0.647, Tmax = 0.747k = −16→15
10018 measured reflectionsl = −26→19
4002 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.068w = 1/[σ2(Fo2) + (0.0263P)2 + 1.1204P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.003
4002 reflectionsΔρmax = 1.34 e Å3
131 parametersΔρmin = −0.72 e Å3
1 restraintAbsolute structure: Flack (1983), 1518 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.48 (5)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.0638 (4)0.0386 (3)0.05918 (17)0.0303 (8)
N10.9055 (15)0.3459 (2)0.11990 (13)0.0203 (5)
N20.9033 (12)0.2982 (2)−0.00606 (12)0.0168 (5)
C10.893 (2)0.1018 (3)0.0837 (2)0.0284 (9)
C20.9025 (18)0.2473 (2)0.06700 (14)0.0192 (5)
C30.9014 (18)0.4343 (2)−0.00046 (14)0.0165 (5)
C40.9022 (15)0.4649 (2)0.07953 (15)0.0179 (6)
C50.9046 (16)0.2214 (3)−0.07961 (15)0.0226 (7)
C60.893 (2)0.3340 (3)0.20631 (18)0.0326 (11)
C70.901 (2)0.5947 (2)0.10657 (18)0.0239 (6)
C80.9001 (18)0.6923 (2)0.0495 (2)0.0277 (7)
C90.9004 (16)0.6620 (3)−0.03096 (19)0.0255 (7)
C100.9028 (14)0.5327 (2)−0.05820 (16)0.0218 (6)
I10.3999 (3)0.08238 (2)0.21526 (1)0.0330 (1)
H11.153700.047500.092360.0454*
H1A0.775900.064270.057120.0341*
H1B0.876060.088120.139990.0341*
H5A0.983630.14266−0.072230.0339*
H5B0.767640.19799−0.093520.0339*
H5C0.963520.27334−0.121140.0339*
H6A0.837950.249320.219930.0487*
H6B1.026770.342810.228610.0487*
H6C0.806480.402230.226790.0487*
H70.901360.614650.160170.0287*
H80.899070.780240.065120.0333*
H90.899020.73060−0.067450.0306*
H100.905170.51273−0.111800.0262*
U11U22U33U12U13U23
O10.0335 (14)0.0250 (11)0.0324 (14)0.0107 (11)−0.0066 (12)−0.0073 (10)
N10.0282 (11)0.0161 (8)0.0166 (9)−0.002 (3)0.000 (4)−0.0013 (7)
N20.0179 (9)0.0168 (8)0.0158 (9)−0.011 (2)0.001 (3)−0.0022 (7)
C10.045 (2)0.0144 (10)0.0258 (13)0.009 (3)0.004 (4)0.0015 (9)
C20.0215 (10)0.0150 (8)0.0210 (10)0.003 (3)0.003 (5)−0.0004 (8)
C30.0142 (8)0.0155 (9)0.0197 (10)−0.001 (3)0.001 (5)−0.0004 (7)
C40.0179 (10)0.0152 (9)0.0206 (11)0.006 (3)−0.003 (4)−0.0020 (8)
C50.0248 (13)0.0236 (11)0.0194 (11)−0.010 (3)−0.003 (4)−0.0061 (9)
C60.053 (3)0.0289 (12)0.0158 (12)0.003 (4)−0.001 (4)−0.0010 (9)
C70.0250 (11)0.0174 (9)0.0292 (13)0.005 (4)0.001 (6)−0.0065 (9)
C80.0222 (11)0.0130 (9)0.0480 (17)0.000 (4)−0.001 (6)−0.0015 (10)
C90.0183 (11)0.0205 (10)0.0377 (15)−0.008 (3)−0.003 (5)0.0089 (10)
C100.0188 (10)0.0226 (10)0.0240 (12)0.002 (4)−0.001 (5)0.0059 (9)
I10.0493 (1)0.0319 (1)0.0177 (1)−0.0001 (3)−0.0001 (4)−0.0009 (1)
O1—C11.357 (11)C9—C101.389 (4)
O1—H10.8200C1—H1A0.9700
N1—C41.387 (3)C1—H1B0.9700
N1—C61.471 (4)C5—H5A0.9600
N1—C21.342 (3)C5—H5B0.9600
N2—C31.383 (3)C5—H5C0.9600
N2—C51.469 (3)C6—H6A0.9600
N2—C21.341 (3)C6—H6B0.9600
C1—C21.503 (4)C6—H6C0.9600
C3—C101.397 (3)C7—H70.9300
C3—C41.390 (3)C8—H80.9300
C4—C71.393 (3)C9—H90.9300
C7—C81.383 (4)C10—H100.9300
C8—C91.397 (5)
C1—O1—H1109.00C2—C1—H1A109.00
C2—N1—C4108.6 (2)C2—C1—H1B109.00
C2—N1—C6127.0 (2)H1A—C1—H1B108.00
C4—N1—C6124.1 (2)N2—C5—H5A109.00
C2—N2—C3108.69 (19)N2—C5—H5B109.00
C2—N2—C5125.4 (2)N2—C5—H5C109.00
C3—N2—C5125.9 (2)H5A—C5—H5B109.00
O1—C1—C2111.8 (8)H5A—C5—H5C109.00
N1—C2—C1127.3 (2)H5B—C5—H5C109.00
N2—C2—C1123.5 (2)N1—C6—H6A109.00
N1—C2—N2109.24 (19)N1—C6—H6B109.00
N2—C3—C10131.6 (2)N1—C6—H6C109.00
C4—C3—C10121.5 (2)H6A—C6—H6B109.00
N2—C3—C4106.82 (19)H6A—C6—H6C110.00
N1—C4—C7131.3 (2)H6B—C6—H6C109.00
C3—C4—C7122.1 (2)C4—C7—H7122.00
N1—C4—C3106.66 (19)C8—C7—H7122.00
C4—C7—C8116.5 (3)C7—C8—H8119.00
C7—C8—C9121.6 (2)C9—C8—H8119.00
C8—C9—C10122.1 (3)C8—C9—H9119.00
C3—C10—C9116.2 (2)C10—C9—H9119.00
O1—C1—H1A109.00C3—C10—H10122.00
O1—C1—H1B109.00C9—C10—H10122.00
C2—N1—C4—C7179.2 (12)C3—N2—C2—C1176.7 (11)
C6—N1—C4—C74.8 (19)O1—C1—C2—N266.5 (13)
C4—N1—C2—N21.8 (13)O1—C1—C2—N1−115.6 (11)
C6—N1—C2—N2175.9 (10)N2—C3—C10—C9−179.9 (11)
C4—N1—C2—C1−176.4 (11)C4—C3—C10—C9−1.4 (15)
C6—N1—C2—C1−2 (2)C10—C3—C4—C71.1 (17)
C6—N1—C4—C3−175.6 (10)N2—C3—C4—N10.3 (12)
C2—N1—C4—C3−1.2 (12)N2—C3—C4—C7179.9 (10)
C5—N2—C2—N1178.8 (9)C10—C3—C4—N1−178.6 (10)
C5—N2—C2—C1−3.0 (17)N1—C4—C7—C8179.2 (11)
C3—N2—C2—N1−1.6 (13)C3—C4—C7—C8−0.4 (17)
C5—N2—C3—C4−179.6 (9)C4—C7—C8—C90.0 (18)
C2—N2—C3—C10179.5 (12)C7—C8—C9—C10−0.4 (18)
C2—N2—C3—C40.8 (12)C8—C9—C10—C31.1 (15)
C5—N2—C3—C10−0.9 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1···I1i0.82002.66003.473 (3)171.00
C5—H5A···O10.96002.52003.170 (5)125.00
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯I1i 0.822.663.473 (3)171
C5—H5A⋯O10.962.523.170 (5)125

Symmetry code: (i) .

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