Literature DB >> 24427049

tert-Butyl N-(thio-phen-2-yl)carbamate.

Gene C Hsu1, Laci M Singer1, David B Cordes1, Michael Findlater1.   

Abstract

In the title compound, C9H13NO2S, the dihedral angle between the thiophene ring and the carbamate group is 15.79 (14)°. In the crystal structure, intra-molecular C-H⋯O inter-actions in tandem with the tert-butyl groups render the packing of adjacent mol-ecules in the [001] direction nearly perpendicular [the angle between adjacent thio-phene rings is 74.83 (7)°]. An inter-molecular N-H⋯O hydrogen bond gives rise to a chain extending along [001]. The crystal studied was found to be a racemic twin.

Entities:  

Year:  2013        PMID: 24427049      PMCID: PMC3884429          DOI: 10.1107/S160053681302196X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Binder et al. (1977 ▶); Kruse et al. (1989 ▶). For related structures, see: Arsenyan et al. (2008 ▶); Elshaarawy & Janiak (2011 ▶); Low et al. (2009 ▶); Hsu et al. (2013 ▶).

Experimental

Crystal data

C9H13NO2S M = 199.26 Orthorhombic, a = 11.732 (2) Å b = 8.6513 (17) Å c = 9.879 (2) Å V = 1002.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 153 K 0.20 × 0.10 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.944, T max = 0.977 2112 measured reflections 2112 independent reflections 1816 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.078 S = 1.04 2112 reflections 125 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack x determined using 703 quotients [(I+)−(I−)]/[(I+)+(I−)] (Parsons & Flack, 2004 ▶) Absolute structure parameter: 0.53 (4) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: COLLECT; data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, enCIFer (Allen et al., 2004 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681302196X/zs2273sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302196X/zs2273Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681302196X/zs2273Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H13NO2SDx = 1.320 Mg m3
Mr = 199.26Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pca21Cell parameters from 1327 reflections
a = 11.732 (2) Åθ = 1.0–27.5°
b = 8.6513 (17) ŵ = 0.29 mm1
c = 9.879 (2) ÅT = 153 K
V = 1002.7 (3) Å3Rod, colorless
Z = 40.20 × 0.10 × 0.08 mm
F(000) = 424
Nonius KappaCCD diffractometer2112 independent reflections
Radiation source: fine-focus sealed tube1816 reflections with I > 2σ(I)
φ and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997)h = −15→15
Tmin = 0.944, Tmax = 0.977k = −11→11
2112 measured reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.078w = 1/[σ2(Fo2) + (0.0301P)2 + 0.2397P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2112 reflectionsΔρmax = 0.25 e Å3
125 parametersΔρmin = −0.19 e Å3
2 restraintsAbsolute structure: Flack x determined using 703 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004).
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.53 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.13622 (6)0.05380 (7)0.63359 (7)0.02745 (19)
O10.29399 (16)0.2992 (2)0.61913 (19)0.0273 (4)
O20.32467 (18)0.4564 (2)0.80079 (18)0.0289 (5)
N10.23352 (19)0.2367 (2)0.8305 (2)0.0224 (5)
H1N0.238 (3)0.264 (4)0.919 (2)0.036 (9)*
C10.1713 (2)0.1041 (3)0.7987 (3)0.0209 (5)
C20.1219 (3)0.0067 (3)0.8902 (3)0.0241 (6)
H20.13170.01500.98540.029*
C30.0542 (2)−0.1082 (3)0.8269 (3)0.0289 (6)
H30.0137−0.18550.87540.035*
C40.0533 (3)−0.0964 (3)0.6907 (3)0.0306 (7)
H40.0115−0.16350.63290.037*
C50.2857 (2)0.3295 (3)0.7389 (3)0.0220 (6)
C60.3798 (2)0.5829 (3)0.7233 (3)0.0250 (6)
C70.3034 (3)0.6385 (4)0.6108 (4)0.0438 (9)
H7A0.29280.55540.54460.066*
H7B0.33840.72800.56630.066*
H7C0.22920.66840.64830.066*
C80.4940 (3)0.5271 (4)0.6722 (4)0.0445 (9)
H8A0.53840.48560.74800.067*
H8B0.53540.61350.63100.067*
H8C0.48230.44580.60450.067*
C90.3945 (3)0.7083 (3)0.8284 (4)0.0459 (9)
H9A0.31960.74080.86170.069*
H9B0.43370.79700.78780.069*
H9C0.43990.66850.90400.069*
U11U22U33U12U13U23
S10.0369 (4)0.0261 (3)0.0194 (3)−0.0050 (3)0.0003 (3)−0.0034 (3)
O10.0377 (11)0.0268 (9)0.0173 (10)−0.0043 (8)0.0014 (9)−0.0012 (8)
O20.0425 (12)0.0258 (10)0.0182 (9)−0.0120 (8)0.0029 (9)0.0003 (8)
N10.0293 (13)0.0232 (11)0.0147 (9)−0.0051 (9)0.0006 (10)−0.0009 (10)
C10.0234 (13)0.0211 (12)0.0183 (12)0.0033 (11)0.0000 (11)−0.0012 (11)
C20.0277 (16)0.0226 (13)0.0221 (13)0.0002 (11)−0.0017 (11)0.0006 (11)
C30.0300 (16)0.0227 (14)0.0340 (15)−0.0037 (12)−0.0002 (13)0.0029 (13)
C40.0329 (18)0.0259 (15)0.0330 (15)−0.0030 (12)−0.0029 (14)−0.0039 (13)
C50.0238 (15)0.0227 (14)0.0195 (15)0.0016 (11)−0.0023 (11)−0.0005 (11)
C60.0288 (17)0.0228 (14)0.0234 (13)−0.0047 (12)0.0053 (11)0.0019 (11)
C70.0453 (19)0.0306 (15)0.056 (2)−0.0046 (14)−0.0128 (18)0.0135 (16)
C80.0299 (17)0.0339 (16)0.070 (2)−0.0022 (13)0.0128 (18)0.0021 (16)
C90.070 (2)0.0327 (17)0.0347 (17)−0.0212 (17)0.0122 (17)−0.0068 (15)
S1—C41.718 (3)C4—H40.9500
S1—C11.737 (3)C6—C71.507 (4)
O1—C51.216 (3)C6—C81.511 (4)
O2—C51.337 (3)C6—C91.512 (4)
O2—C61.484 (3)C7—H7A0.9800
N1—C51.356 (3)C7—H7B0.9800
N1—C11.396 (3)C7—H7C0.9800
N1—H1N0.90 (2)C8—H8A0.9800
C1—C21.365 (4)C8—H8B0.9800
C2—C31.418 (4)C8—H8C0.9800
C2—H20.9500C9—H9A0.9800
C3—C41.350 (4)C9—H9B0.9800
C3—H30.9500C9—H9C0.9800
C4—S1—C190.88 (14)C7—C6—C8112.6 (3)
C5—O2—C6121.3 (2)O2—C6—C9103.0 (2)
C5—N1—C1124.9 (2)C7—C6—C9110.2 (3)
C5—N1—H1N117 (2)C8—C6—C9111.0 (3)
C1—N1—H1N118 (2)C6—C7—H7A109.5
C2—C1—N1125.4 (2)C6—C7—H7B109.5
C2—C1—S1111.5 (2)H7A—C7—H7B109.5
N1—C1—S1122.77 (19)C6—C7—H7C109.5
C1—C2—C3112.2 (3)H7A—C7—H7C109.5
C1—C2—H2123.9H7B—C7—H7C109.5
C3—C2—H2123.9C6—C8—H8A109.5
C4—C3—C2113.0 (3)C6—C8—H8B109.5
C4—C3—H3123.5H8A—C8—H8B109.5
C2—C3—H3123.5C6—C8—H8C109.5
C3—C4—S1112.3 (2)H8A—C8—H8C109.5
C3—C4—H4123.8H8B—C8—H8C109.5
S1—C4—H4123.8C6—C9—H9A109.5
O1—C5—O2126.4 (2)C6—C9—H9B109.5
O1—C5—N1123.9 (2)H9A—C9—H9B109.5
O2—C5—N1109.6 (2)C6—C9—H9C109.5
O2—C6—C7110.9 (2)H9A—C9—H9C109.5
O2—C6—C8108.8 (2)H9B—C9—H9C109.5
C5—N1—C1—C2177.5 (3)C1—S1—C4—C3−0.9 (3)
C5—N1—C1—S1−8.9 (4)C6—O2—C5—O13.3 (4)
C4—S1—C1—C20.9 (2)C6—O2—C5—N1−176.4 (2)
C4—S1—C1—N1−173.5 (2)C1—N1—C5—O1−7.8 (4)
N1—C1—C2—C3173.6 (2)C1—N1—C5—O2171.9 (2)
S1—C1—C2—C3−0.7 (3)C5—O2—C6—C754.5 (3)
C1—C2—C3—C40.0 (4)C5—O2—C6—C8−69.8 (3)
C2—C3—C4—S10.7 (4)C5—O2—C6—C9172.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.90 (2)2.04 (2)2.920 (3)165 (3)
C7—H7A···O10.982.332.938 (4)119
C8—H8C···O10.982.553.109 (4)116
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.90 (2)2.04 (2)2.920 (3)165 (3)
C7—H7A⋯O10.982.332.938 (4)119
C8—H8C⋯O10.982.553.109 (4)116

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, tubulin binding, antineoplastic evaluation, and structure-activity relationship of oncodazole analogues.

Authors:  L I Kruse; D L Ladd; P B Harrsch; F L McCabe; S M Mong; L Faucette; R Johnson
Journal:  J Med Chem       Date:  1989-02       Impact factor: 7.446

3.  Thio-phene-2-carbonyl azide.

Authors:  Gene C Hsu; Laci M Singer; David B Cordes; Michael Findlater
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-24
  3 in total

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