Literature DB >> 24109376

Thio-phene-2-carbonyl azide.

Gene C Hsu1, Laci M Singer, David B Cordes, Michael Findlater.   

Abstract

The title compound, C5H3N3OS, is almost planar (r.m.s. deviation for the ten non-H atoms = 0.018 Å) and forms an extended layer structure in the (100) plane, held together via hydrogen-bonding inter-actions between adjacent mol-ecules. Of particular note is the occurrence of RC-H⋯N(-)=N(+)=NR inter-actions between an aromatic C-H group and an azide moiety which, in conjunction with a complementary C-H⋯O=C inter-action, forms a nine-membered ring.

Entities:  

Year:  2013        PMID: 24109376      PMCID: PMC3793789          DOI: 10.1107/S1600536813019740

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a previous preparation of the title compound, see: Binder et al. (1977 ▶). For the synthesis of the starting material, 2-thio­phene­carbonyl chloride, see: Kruse et al. (1989 ▶). For related structures, see: Arsenyan et al. (2008 ▶); Elshaarawy & Janiak (2011 ▶); Low et al. (2009 ▶).

Experimental

Crystal data

C5H3N3OS M = 153.16 Monoclinic, a = 12.668 (3) Å b = 6.2153 (12) Å c = 16.400 (3) Å β = 95.91 (3)° V = 1284.4 (4) Å3 Z = 8 Mo Kα radiation μ = 0.43 mm−1 T = 153 K 0.20 × 0.16 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.920, T max = 0.939 2728 measured reflections 1459 independent reflections 1152 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.154 S = 1.13 1459 reflections 91 parameters H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.49 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: COLLECT; data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2013 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL, enCIFer (Allen et al., 2004 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019740/tk5242sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019740/tk5242Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019740/tk5242Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H3N3OSF(000) = 624
Mr = 153.16Dx = 1.584 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 12.668 (3) ÅCell parameters from 1494 reflections
b = 6.2153 (12) Åθ = 1.0–27.5°
c = 16.400 (3) ŵ = 0.43 mm1
β = 95.91 (3)°T = 153 K
V = 1284.4 (4) Å3Block, colourless
Z = 80.20 × 0.16 × 0.15 mm
Nonius KappaCCD diffractometer1152 reflections with I > 2σ(I)
Radiation source: fine focus sealed tubeRint = 0.025
φ and ω scansθmax = 27.4°, θmin = 2.5°
Absorption correction: multi-scan (DENZO and SCALEPACK; Otwinowski & Minor, 1997)h = −15→16
Tmin = 0.920, Tmax = 0.939k = −7→8
2728 measured reflectionsl = −21→21
1459 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0659P)2 + 3.253P] where P = (Fo2 + 2Fc2)/3
1459 reflections(Δ/σ)max = 0.001
91 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.3676 (2)0.0373 (4)0.57926 (15)0.0260 (6)
C20.3494 (2)−0.1827 (4)0.59864 (15)0.0238 (6)
H20.3401−0.29880.56090.029*
C30.3478 (2)−0.1956 (5)0.68730 (18)0.0334 (7)
H30.3368−0.32670.71500.040*
C40.3632 (2)−0.0048 (5)0.72675 (17)0.0347 (7)
H40.36470.01050.78450.042*
C50.3763 (2)0.1133 (5)0.49575 (15)0.0271 (6)
N10.3946 (2)0.3386 (4)0.49385 (13)0.0323 (6)
N20.39920 (19)0.4093 (4)0.42227 (13)0.0308 (6)
N30.4044 (2)0.4879 (5)0.36125 (15)0.0401 (7)
O10.36928 (17)−0.0003 (4)0.43538 (12)0.0382 (5)
S10.37950 (6)0.20165 (12)0.66320 (4)0.0360 (3)
U11U22U33U12U13U23
C10.0249 (13)0.0295 (14)0.0237 (12)−0.0011 (11)0.0039 (10)−0.0039 (10)
C20.0247 (13)0.0226 (13)0.0248 (12)0.0005 (10)0.0062 (10)0.0053 (10)
C30.0358 (16)0.0308 (16)0.0340 (15)−0.0005 (12)0.0055 (12)0.0079 (12)
C40.0364 (16)0.0438 (18)0.0240 (13)0.0034 (14)0.0035 (11)0.0026 (12)
C50.0251 (13)0.0311 (15)0.0255 (13)−0.0021 (11)0.0045 (10)−0.0028 (11)
N10.0438 (14)0.0336 (13)0.0196 (11)−0.0007 (11)0.0028 (9)−0.0002 (9)
N20.0317 (13)0.0335 (14)0.0266 (12)−0.0035 (10)0.0002 (9)−0.0026 (10)
N30.0461 (16)0.0450 (16)0.0286 (13)−0.0109 (13)0.0005 (10)0.0039 (12)
O10.0519 (14)0.0382 (12)0.0255 (10)−0.0086 (10)0.0080 (8)−0.0072 (9)
S10.0487 (5)0.0318 (4)0.0275 (4)−0.0028 (3)0.0036 (3)−0.0018 (3)
C1—C21.428 (4)C4—S11.679 (3)
C1—C51.464 (4)C4—H40.9500
C1—S11.708 (3)C5—O11.212 (3)
C2—C31.459 (4)C5—N11.420 (4)
C2—H20.9500N1—N21.260 (3)
C3—C41.355 (4)N2—N31.122 (3)
C3—H30.9500
C2—C1—C5123.1 (2)C3—C4—S1113.2 (2)
C2—C1—S1113.34 (19)C3—C4—H4123.4
C5—C1—S1123.5 (2)S1—C4—H4123.4
C1—C2—C3107.1 (2)O1—C5—N1123.7 (2)
C1—C2—H2126.5O1—C5—C1124.8 (3)
C3—C2—H2126.5N1—C5—C1111.5 (2)
C4—C3—C2114.3 (3)N2—N1—C5112.8 (2)
C4—C3—H3122.8N3—N2—N1174.5 (3)
C2—C3—H3122.8C4—S1—C192.11 (14)
C5—C1—C2—C3178.9 (2)S1—C1—C5—N1−0.6 (3)
S1—C1—C2—C3−0.5 (3)O1—C5—N1—N22.1 (4)
C1—C2—C3—C40.0 (3)C1—C5—N1—N2−178.0 (2)
C2—C3—C4—S10.5 (4)C3—C4—S1—C1−0.7 (3)
C2—C1—C5—O1−0.1 (4)C2—C1—S1—C40.7 (2)
S1—C1—C5—O1179.2 (2)C5—C1—S1—C4−178.7 (2)
C2—C1—C5—N1−179.9 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···N1i0.952.633.512 (4)155
C3—H3···N3ii0.952.663.396 (4)135
C4—H4···O1ii0.952.473.415 (4)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯N1i 0.952.633.512 (4)155
C3—H3⋯N3ii 0.952.663.396 (4)135
C4—H4⋯O1ii 0.952.473.415 (4)173

Symmetry codes: (i) ; (ii) .

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