| Literature DB >> 24109376 |
Gene C Hsu1, Laci M Singer, David B Cordes, Michael Findlater.
Abstract
The title compound, C5H3N3OS, is almost planar (r.m.s. deviation for the ten non-H atoms = 0.018 Å) and forms an extended layer structure in the (100) plane, held together via hydrogen-bonding inter-actions between adjacent mol-ecules. Of particular note is the occurrence of RC-H⋯N(-)=N(+)=NR inter-actions between an aromatic C-H group and an azide moiety which, in conjunction with a complementary C-H⋯O=C inter-action, forms a nine-membered ring.Entities:
Year: 2013 PMID: 24109376 PMCID: PMC3793789 DOI: 10.1107/S1600536813019740
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H3N3OS | |
| Monoclinic, | Mo |
| Cell parameters from 1494 reflections | |
| θ = 1.0–27.5° | |
| µ = 0.43 mm−1 | |
| β = 95.91 (3)° | |
| Block, colourless | |
| 0.20 × 0.16 × 0.15 mm |
| Nonius KappaCCD diffractometer | 1152 reflections with |
| Radiation source: fine focus sealed tube | |
| φ and ω scans | θmax = 27.4°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 2728 measured reflections | |
| 1459 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1459 reflections | (Δ/σ)max = 0.001 |
| 91 parameters | Δρmax = 0.59 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.3676 (2) | 0.0373 (4) | 0.57926 (15) | 0.0260 (6) | |
| C2 | 0.3494 (2) | −0.1827 (4) | 0.59864 (15) | 0.0238 (6) | |
| H2 | 0.3401 | −0.2988 | 0.5609 | 0.029* | |
| C3 | 0.3478 (2) | −0.1956 (5) | 0.68730 (18) | 0.0334 (7) | |
| H3 | 0.3368 | −0.3267 | 0.7150 | 0.040* | |
| C4 | 0.3632 (2) | −0.0048 (5) | 0.72675 (17) | 0.0347 (7) | |
| H4 | 0.3647 | 0.0105 | 0.7845 | 0.042* | |
| C5 | 0.3763 (2) | 0.1133 (5) | 0.49575 (15) | 0.0271 (6) | |
| N1 | 0.3946 (2) | 0.3386 (4) | 0.49385 (13) | 0.0323 (6) | |
| N2 | 0.39920 (19) | 0.4093 (4) | 0.42227 (13) | 0.0308 (6) | |
| N3 | 0.4044 (2) | 0.4879 (5) | 0.36125 (15) | 0.0401 (7) | |
| O1 | 0.36928 (17) | −0.0003 (4) | 0.43538 (12) | 0.0382 (5) | |
| S1 | 0.37950 (6) | 0.20165 (12) | 0.66320 (4) | 0.0360 (3) |
| C1 | 0.0249 (13) | 0.0295 (14) | 0.0237 (12) | −0.0011 (11) | 0.0039 (10) | −0.0039 (10) |
| C2 | 0.0247 (13) | 0.0226 (13) | 0.0248 (12) | 0.0005 (10) | 0.0062 (10) | 0.0053 (10) |
| C3 | 0.0358 (16) | 0.0308 (16) | 0.0340 (15) | −0.0005 (12) | 0.0055 (12) | 0.0079 (12) |
| C4 | 0.0364 (16) | 0.0438 (18) | 0.0240 (13) | 0.0034 (14) | 0.0035 (11) | 0.0026 (12) |
| C5 | 0.0251 (13) | 0.0311 (15) | 0.0255 (13) | −0.0021 (11) | 0.0045 (10) | −0.0028 (11) |
| N1 | 0.0438 (14) | 0.0336 (13) | 0.0196 (11) | −0.0007 (11) | 0.0028 (9) | −0.0002 (9) |
| N2 | 0.0317 (13) | 0.0335 (14) | 0.0266 (12) | −0.0035 (10) | 0.0002 (9) | −0.0026 (10) |
| N3 | 0.0461 (16) | 0.0450 (16) | 0.0286 (13) | −0.0109 (13) | 0.0005 (10) | 0.0039 (12) |
| O1 | 0.0519 (14) | 0.0382 (12) | 0.0255 (10) | −0.0086 (10) | 0.0080 (8) | −0.0072 (9) |
| S1 | 0.0487 (5) | 0.0318 (4) | 0.0275 (4) | −0.0028 (3) | 0.0036 (3) | −0.0018 (3) |
| C1—C2 | 1.428 (4) | C4—S1 | 1.679 (3) |
| C1—C5 | 1.464 (4) | C4—H4 | 0.9500 |
| C1—S1 | 1.708 (3) | C5—O1 | 1.212 (3) |
| C2—C3 | 1.459 (4) | C5—N1 | 1.420 (4) |
| C2—H2 | 0.9500 | N1—N2 | 1.260 (3) |
| C3—C4 | 1.355 (4) | N2—N3 | 1.122 (3) |
| C3—H3 | 0.9500 | ||
| C2—C1—C5 | 123.1 (2) | C3—C4—S1 | 113.2 (2) |
| C2—C1—S1 | 113.34 (19) | C3—C4—H4 | 123.4 |
| C5—C1—S1 | 123.5 (2) | S1—C4—H4 | 123.4 |
| C1—C2—C3 | 107.1 (2) | O1—C5—N1 | 123.7 (2) |
| C1—C2—H2 | 126.5 | O1—C5—C1 | 124.8 (3) |
| C3—C2—H2 | 126.5 | N1—C5—C1 | 111.5 (2) |
| C4—C3—C2 | 114.3 (3) | N2—N1—C5 | 112.8 (2) |
| C4—C3—H3 | 122.8 | N3—N2—N1 | 174.5 (3) |
| C2—C3—H3 | 122.8 | C4—S1—C1 | 92.11 (14) |
| C5—C1—C2—C3 | 178.9 (2) | S1—C1—C5—N1 | −0.6 (3) |
| S1—C1—C2—C3 | −0.5 (3) | O1—C5—N1—N2 | 2.1 (4) |
| C1—C2—C3—C4 | 0.0 (3) | C1—C5—N1—N2 | −178.0 (2) |
| C2—C3—C4—S1 | 0.5 (4) | C3—C4—S1—C1 | −0.7 (3) |
| C2—C1—C5—O1 | −0.1 (4) | C2—C1—S1—C4 | 0.7 (2) |
| S1—C1—C5—O1 | 179.2 (2) | C5—C1—S1—C4 | −178.7 (2) |
| C2—C1—C5—N1 | −179.9 (2) |
| H··· | ||||
| C2—H2···N1i | 0.95 | 2.63 | 3.512 (4) | 155 |
| C3—H3···N3ii | 0.95 | 2.66 | 3.396 (4) | 135 |
| C4—H4···O1ii | 0.95 | 2.47 | 3.415 (4) | 173 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯N1i | 0.95 | 2.63 | 3.512 (4) | 155 |
| C3—H3⋯N3ii | 0.95 | 2.66 | 3.396 (4) | 135 |
| C4—H4⋯O1ii | 0.95 | 2.47 | 3.415 (4) | 173 |
Symmetry codes: (i) ; (ii) .