| Literature DB >> 24427001 |
P S Kannan1, A S Ganeshraja2, K Anbalagan2, E Govindan3, A Subbiahpandi3.
Abstract
The title mol-ecule, [CoCl2(C5H5N)2(H2O)2], has -1 symmetry with the Co(II) ion situated on an inversion centre. The cation has a distorted octa-hedral coordination environment and is surrounded by two N and two Cl atoms in the equatorial plane, while the coordinating water O atoms occupy the axial positions. The crystal exhibits nonmerohedral twinning with two domain states, the volume fractions of which were refined to 0.883 (2) and 0.117 (3). The crystal packing is stabilized by O-H⋯Cl hydrogen-bond inter-actions, forming two-dimensional networks lying parallel to (001). The crystal packing also features π-π inter-actions between the pyridine rings, with centroid-centroid separations of 3.493 (3) and 3.545 (3) Å.Entities:
Year: 2013 PMID: 24427001 PMCID: PMC3884431 DOI: 10.1107/S1600536813022484
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [CoCl2(C5H5N)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2211 reflections | |
| θ = 2.6–26.7° | |
| µ = 1.77 mm−1 | |
| α = 109.734 (2)° | |
| β = 102.621 (3)° | Block, pink |
| γ = 97.031 (2)° | 0.25 × 0.2 × 0.18 mm |
| Oxford Diffraction Xcalibur diffractometer | 2211 independent reflections |
| Radiation source: Fine-focus sealed tube, Enhance (Mo) X-ray Source | 1926 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.7°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 2211 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2211 reflections | (Δ/σ)max < 0.001 |
| 88 parameters | Δρmax = 0.71 e Å−3 |
| 3 restraints | Δρmin = −0.99 e Å−3 |
| 22 constraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.2308 (7) | 0.2281 (6) | 0.3845 (5) | 0.0301 (9) | |
| H1 | 0.3593 | 0.2270 | 0.3453 | 0.036* | |
| C2 | 0.2576 (7) | 0.3179 (7) | 0.5588 (5) | 0.0374 (10) | |
| H2 | 0.4012 | 0.3792 | 0.6352 | 0.045* | |
| C3 | 0.0695 (8) | 0.3160 (7) | 0.6187 (5) | 0.0380 (10) | |
| H3 | 0.0834 | 0.3749 | 0.7361 | 0.046* | |
| C4 | −0.1391 (7) | 0.2252 (7) | 0.5014 (5) | 0.0339 (9) | |
| H4 | −0.2690 | 0.2200 | 0.5386 | 0.041* | |
| C5 | −0.1549 (7) | 0.1418 (7) | 0.3281 (5) | 0.0297 (8) | |
| H5 | −0.2975 | 0.0832 | 0.2499 | 0.036* | |
| N1 | 0.0267 (5) | 0.1418 (5) | 0.2680 (4) | 0.0247 (7) | |
| O1 | 0.2699 (4) | 0.2637 (4) | 0.0415 (4) | 0.0299 (7) | |
| H1A | 0.264 (8) | 0.388 (4) | 0.045 (6) | 0.045* | |
| H1B | 0.365 (6) | 0.210 (6) | 0.000 (6) | 0.045* | |
| Cl1 | −0.27270 (14) | 0.23327 (14) | −0.06014 (12) | 0.0295 (3) | |
| Co1 | 0.0000 | 0.0000 | 0.0000 | 0.0209 (2) |
| C1 | 0.028 (2) | 0.028 (2) | 0.029 (2) | 0.0014 (16) | 0.0024 (16) | 0.0087 (17) |
| C2 | 0.040 (2) | 0.029 (2) | 0.031 (2) | 0.0004 (18) | −0.0014 (19) | 0.0059 (18) |
| C3 | 0.063 (3) | 0.026 (2) | 0.025 (2) | 0.013 (2) | 0.014 (2) | 0.0074 (18) |
| C4 | 0.046 (3) | 0.030 (2) | 0.034 (2) | 0.0138 (18) | 0.0216 (19) | 0.0147 (19) |
| C5 | 0.029 (2) | 0.027 (2) | 0.030 (2) | 0.0039 (16) | 0.0112 (16) | 0.0053 (17) |
| N1 | 0.0250 (16) | 0.0209 (15) | 0.0256 (16) | 0.0024 (12) | 0.0082 (13) | 0.0057 (13) |
| O1 | 0.0244 (15) | 0.0231 (14) | 0.0428 (17) | 0.0016 (11) | 0.0134 (13) | 0.0117 (14) |
| Cl1 | 0.0237 (5) | 0.0240 (5) | 0.0383 (6) | 0.0052 (4) | 0.0082 (4) | 0.0089 (4) |
| Co1 | 0.0170 (3) | 0.0183 (4) | 0.0228 (4) | −0.0001 (2) | 0.0053 (3) | 0.0035 (3) |
| C1—N1 | 1.347 (5) | C5—H5 | 0.9300 |
| C1—C2 | 1.376 (5) | N1—Co1 | 2.133 (3) |
| C1—H1 | 0.9300 | O1—Co1 | 2.136 (2) |
| C2—C3 | 1.375 (6) | O1—H1A | 0.817 (10) |
| C2—H2 | 0.9300 | O1—H1B | 0.812 (10) |
| C3—C4 | 1.372 (6) | Cl1—Co1 | 2.5078 (9) |
| C3—H3 | 0.9300 | Co1—N1i | 2.133 (3) |
| C4—C5 | 1.379 (6) | Co1—O1i | 2.136 (2) |
| C4—H4 | 0.9300 | Co1—Cl1i | 2.5078 (9) |
| C5—N1 | 1.338 (5) | ||
| N1—C1—C2 | 122.9 (4) | Co1—O1—H1A | 129 (3) |
| N1—C1—H1 | 118.6 | Co1—O1—H1B | 108 (3) |
| C2—C1—H1 | 118.6 | H1A—O1—H1B | 115 (3) |
| C3—C2—C1 | 119.2 (4) | N1—Co1—N1i | 180.0 |
| C3—C2—H2 | 120.4 | N1—Co1—O1i | 92.24 (11) |
| C1—C2—H2 | 120.4 | N1i—Co1—O1i | 87.76 (11) |
| C4—C3—C2 | 118.5 (4) | N1—Co1—O1 | 87.76 (11) |
| C4—C3—H3 | 120.8 | N1i—Co1—O1 | 92.24 (11) |
| C2—C3—H3 | 120.8 | O1i—Co1—O1 | 180.0 |
| C3—C4—C5 | 119.5 (4) | N1—Co1—Cl1i | 89.65 (8) |
| C3—C4—H4 | 120.2 | N1i—Co1—Cl1i | 90.35 (8) |
| C5—C4—H4 | 120.2 | O1i—Co1—Cl1i | 88.46 (7) |
| N1—C5—C4 | 122.6 (4) | O1—Co1—Cl1i | 91.54 (7) |
| N1—C5—H5 | 118.7 | N1—Co1—Cl1 | 90.35 (8) |
| C4—C5—H5 | 118.7 | N1i—Co1—Cl1 | 89.65 (8) |
| C5—N1—C1 | 117.3 (3) | O1i—Co1—Cl1 | 91.54 (7) |
| C5—N1—Co1 | 122.1 (3) | O1—Co1—Cl1 | 88.46 (7) |
| C1—N1—Co1 | 120.5 (3) | Cl1i—Co1—Cl1 | 180.0 |
| N1—C1—C2—C3 | 1.5 (6) | C5—N1—Co1—O1i | −37.2 (3) |
| C1—C2—C3—C4 | −0.4 (6) | C1—N1—Co1—O1i | 140.2 (3) |
| C2—C3—C4—C5 | −0.9 (6) | C5—N1—Co1—O1 | 142.8 (3) |
| C3—C4—C5—N1 | 1.2 (6) | C1—N1—Co1—O1 | −39.8 (3) |
| C4—C5—N1—C1 | −0.1 (6) | C5—N1—Co1—Cl1i | −125.6 (3) |
| C4—C5—N1—Co1 | 177.4 (3) | C1—N1—Co1—Cl1i | 51.8 (3) |
| C2—C1—N1—C5 | −1.3 (6) | C5—N1—Co1—Cl1 | 54.4 (3) |
| C2—C1—N1—Co1 | −178.8 (3) | C1—N1—Co1—Cl1 | −128.2 (3) |
| H··· | ||||
| O1—H1 | 0.82 (3) | 2.45 (3) | 3.266 (3) | 176 (5) |
| O1—H1 | 0.81 (4) | 2.41 (4) | 3.156 (3) | 153 (4) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.82 (3) | 2.45 (3) | 3.266 (3) | 176 (5) |
| O1—H1 | 0.81 (4) | 2.41 (4) | 3.156 (3) | 153 (4) |
Symmetry codes: (i) ; (ii) .