Literature DB >> 21580911

A new cobalt(II) complex with 5-(4-pyrid-yl)tetra-zole ligands.

Wei-Feng Zhu, Xing-Fen Zhou.   

Abstract

A new mononuclear cobalt(II) complex, n class="Species">tetra-aqua-bis[5-(4-pyrid-yl)tetra-zolido-κN(5)]cobalt(II) dihydrate, [Co(C(6)H(4)N(5))(2)(H(2)O)(4)]·2H(2)O, has been synthesized and structurally characterized. The Co(II) atom is coordinated by two N atoms from 5-(4-pyrid-yl)tetra-zole ligands (L), as well as four O atoms from coordinated water mol-ecules. The mol-ecule is centrosymmetric, with pairs of equivalent ligands lying trans to each other in a slightly distorted octa-hedral coordination geometry. A prominent feature of the complex is the formation of a three-dimensional supra-molecular network via O-H⋯O and O-H⋯N hydrogen bonds.

Entities:  

Year:  2008        PMID: 21580911      PMCID: PMC2959662          DOI: 10.1107/S1600536808034880

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The corresponding complex with manganese(II) ion as the central n class="Chemical">metal atom (Lin et al., 2005 ▶) has a similar structure to that of the title complex. For related literature, see: Detert & Schollmeier (1999 ▶).

Experimental

Crystal data

[Co(C6H4N5)2(n class="Chemical">H2O)4]·2H2O M = 459.31 Triclinic, a = 7.2087 (16) Å b = 7.8002 (17) Å c = 8.6702 (18) Å α = 91.406 (3)° β = 90.482 (3)° γ = 100.953 (3)° V = 478.45 (18) Å3 Z = 1 Mo Kα radiation μ = 0.95 mm−1 T = 294 (2) K 0.20 × 0.20 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick 1996 ▶) T min = 0.763, T max = 0.890 2456 measured reflections 1684 independent reflections 1562 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.083 S = 1.12 1684 reflections 157 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034880/br2083sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034880/br2083Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H4N5)2(H2O)4]·2H2OZ = 1
Mr = 459.31F(000) = 237
Triclinic, P1Dx = 1.594 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2087 (16) ÅCell parameters from 1859 reflections
b = 7.8002 (17) Åθ = 2.7–26.3°
c = 8.6702 (18) ŵ = 0.95 mm1
α = 91.406 (3)°T = 294 K
β = 90.482 (3)°Block, red
γ = 100.953 (3)°0.20 × 0.20 × 0.14 mm
V = 478.45 (18) Å3
Bruker SMART CCD area-detector diffractometer1684 independent reflections
Radiation source: fine-focus sealed tube1562 reflections with I > 2σ(I)
graphiteRint = 0.013
phi and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick 1996)h = −5→8
Tmin = 0.763, Tmax = 0.890k = −8→9
2456 measured reflectionsl = −10→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.035P)2 + 2.1646P] where P = (Fo2 + 2Fc2)/3
1684 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.49 e Å3
9 restraintsΔρmin = −0.28 e Å3
xyzUiso*/Ueq
Co10.50000.50000.00000.02432 (16)
O10.6737 (2)0.6584 (2)0.16137 (19)0.0330 (4)
O20.7102 (3)0.3451 (2)−0.0278 (2)0.0372 (4)
N10.3835 (3)0.3267 (2)0.1789 (2)0.0285 (4)
N20.2607 (3)0.0110 (3)0.6942 (2)0.0334 (5)
N30.2040 (3)−0.1406 (3)0.7653 (2)0.0371 (5)
N40.1459 (3)−0.2640 (3)0.6620 (2)0.0376 (5)
N50.1617 (3)−0.1980 (3)0.5206 (2)0.0343 (5)
C10.3706 (4)0.3835 (3)0.3237 (3)0.0353 (6)
H10.39750.50340.34410.042*
C20.3196 (4)0.2748 (3)0.4445 (3)0.0372 (6)
H20.31200.32130.54350.045*
C30.2795 (3)0.0948 (3)0.4185 (3)0.0265 (5)
C40.2848 (5)0.0366 (3)0.2677 (3)0.0443 (7)
H40.2542−0.08230.24330.053*
C50.3357 (5)0.1551 (3)0.1530 (3)0.0445 (7)
H50.33660.11270.05190.053*
C60.2333 (3)−0.0290 (3)0.5441 (3)0.0271 (5)
O30.0218 (2)0.5988 (2)0.25348 (19)0.0332 (4)
H1A0.670 (4)0.7610 (19)0.197 (3)0.044 (8)*
H1B0.782 (3)0.629 (4)0.170 (4)0.073 (12)*
H2A0.736 (4)0.276 (3)0.040 (2)0.043 (8)*
H2B0.794 (3)0.372 (4)−0.096 (3)0.056 (10)*
H3A0.066 (4)0.662 (3)0.332 (2)0.040 (8)*
H3B−0.018 (4)0.4918 (15)0.272 (3)0.052 (9)*
U11U22U33U12U13U23
Co10.0335 (3)0.0211 (2)0.0174 (2)0.00208 (17)0.00210 (16)0.00325 (16)
O10.0416 (10)0.0277 (9)0.0283 (9)0.0039 (7)−0.0052 (7)−0.0036 (7)
O20.0474 (11)0.0395 (10)0.0289 (10)0.0169 (8)0.0099 (8)0.0130 (8)
N10.0362 (10)0.0248 (10)0.0229 (10)0.0014 (8)0.0022 (8)0.0034 (8)
N20.0459 (12)0.0276 (11)0.0247 (11)0.0016 (9)−0.0018 (9)0.0068 (8)
N30.0489 (13)0.0325 (11)0.0279 (11)0.0019 (9)−0.0012 (9)0.0104 (9)
N40.0499 (13)0.0291 (11)0.0313 (12)−0.0004 (9)−0.0018 (9)0.0121 (9)
N50.0469 (12)0.0264 (11)0.0267 (11)−0.0010 (9)−0.0011 (9)0.0078 (8)
C10.0497 (15)0.0245 (12)0.0282 (13)−0.0019 (10)0.0027 (11)0.0028 (10)
C20.0527 (16)0.0340 (14)0.0217 (12)−0.0001 (11)0.0022 (11)0.0016 (10)
C30.0282 (11)0.0259 (12)0.0245 (11)0.0026 (9)0.0013 (9)0.0063 (9)
C40.077 (2)0.0223 (13)0.0296 (14)−0.0022 (12)0.0049 (13)0.0022 (10)
C50.077 (2)0.0301 (14)0.0217 (12)−0.0012 (13)0.0043 (12)0.0026 (10)
C60.0280 (11)0.0275 (12)0.0254 (11)0.0040 (9)0.0000 (9)0.0057 (9)
O30.0422 (10)0.0260 (9)0.0292 (9)0.0002 (8)0.0012 (7)0.0040 (7)
Co1—O1i2.0855 (16)N3—N41.304 (3)
Co1—O12.0855 (16)N4—N51.339 (3)
Co1—O22.1220 (17)N5—C61.331 (3)
Co1—O2i2.1220 (17)C1—C21.372 (3)
Co1—N12.1520 (19)C1—H10.9300
Co1—N1i2.1521 (19)C2—C31.391 (3)
O1—H1A0.855 (10)C2—H20.9300
O1—H1B0.857 (10)C3—C41.377 (3)
O2—H2A0.849 (10)C3—C61.471 (3)
O2—H2B0.851 (10)C4—C51.378 (4)
N1—C51.331 (3)C4—H40.9300
N1—C11.331 (3)C5—H50.9300
N2—C61.334 (3)O3—H3A0.853 (10)
N2—N31.342 (3)O3—H3B0.849 (10)
O1i—Co1—O290.42 (7)N4—N3—N2109.21 (19)
O1—Co1—O289.58 (7)N3—N4—N5109.94 (19)
O1i—Co1—O2i89.58 (7)C6—N5—N4104.62 (19)
O1—Co1—O2i90.42 (7)N1—C1—C2123.5 (2)
O1i—Co1—N189.50 (7)N1—C1—H1118.2
O1—Co1—N190.50 (7)C2—C1—H1118.2
O2—Co1—N187.51 (7)C1—C2—C3119.9 (2)
O2i—Co1—N192.49 (7)C1—C2—H2120.1
O1i—Co1—N1i90.50 (7)C3—C2—H2120.1
O1—Co1—N1i89.50 (7)C4—C3—C2116.5 (2)
O2—Co1—N1i92.49 (7)C4—C3—C6121.0 (2)
O2i—Co1—N1i87.51 (7)C2—C3—C6122.5 (2)
Co1—O1—H1A130.6 (18)C3—C4—C5119.8 (2)
Co1—O1—H1B112 (2)C3—C4—H4120.1
H1A—O1—H1B114.2 (17)C5—C4—H4120.1
Co1—O2—H2A123.1 (17)N1—C5—C4123.7 (2)
Co1—O2—H2B118.7 (18)N1—C5—H5118.2
H2A—O2—H2B115.9 (17)C4—C5—H5118.2
C5—N1—C1116.5 (2)N5—C6—N2111.4 (2)
C5—N1—Co1121.48 (16)N5—C6—C3123.4 (2)
C1—N1—Co1121.77 (16)N2—C6—C3125.1 (2)
C6—N2—N3104.82 (19)H3A—O3—H3B114.8 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2ii0.86 (1)1.97 (1)2.795 (3)162 (1)
O1—H1B···O3iii0.86 (1)1.93 (1)2.753 (3)162 (1)
O2—H2A···N3iv0.85 (1)2.10 (1)2.939 (3)171 (1)
O2—H2B···O3i0.85 (1)1.90 (1)2.745 (3)172 (1)
O3—H3A···N5v0.85 (1)1.99 (1)2.840 (3)178 (1)
O3—H3B···N4vi0.85 (1)1.94 (1)2.780 (3)169 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N2i0.855 (10)1.968 (10)2.795 (3)161.84 (3)
O1—H1B⋯O3ii0.857 (10)1.93 (1)2.753 (3)161.83 (3)
O2—H2A⋯N3iii0.849 (10)2.10 (1)2.939 (3)170.66 (3)
O2—H2B⋯O3iv0.851 (3)1.90 (1)2.745 (3)172.44 (3)
O3—H3A⋯N5v0.853 (10)1.99 (1)2.840 (3)177.52 (3)
O3—H3B⋯N4vi0.849 (10)1.942 (10)2.780 (3)168.93 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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