Literature DB >> 24425812

Sphingomonas aerophila sp. nov. and Sphingomonas naasensis sp. nov., isolated from air and soil, respectively.

Soo-Jin Kim1, Ji-Young Moon1, Jun-Muk Lim2,1, Jae-Hyung Ahn1, Hang-Yeon Weon1, Tae-Young Ahn2, Soon-Wo Kwon1.   

Abstract

Two strains, designated 5413J-26(T) and KIS18-15(T), were isolated from the air and forest soil, respectively, in South Korea. Cells of the two strains were Gram-stain-negative, aerobic, polar-flagellated and rod-shaped. According to the phylogenetic tree, strains 5413J-26(T) and KIS18-15(T) fell into the cluster of Sphingomonas sensu stricto. Strain 5413J-26(T) showed the highest sequence similarities with Sphingomonas trueperi LMG 2142(T) (96.6%), Sphingomonas molluscorum KMM 3882(T) (96.5%), Sphingomonas azotifigens NBRC 15497(T) (96.3 %) and Sphingomonas pituitosa EDIV(T) (96.1 %), while strain KIS18-15(T) had the highest sequence similarity with Sphingomonas soli T5-04(T) (96.8%), Sphingomonas pituitosa EDIV(T) (96.6%), Sphingomonas leidyi ATCC 15260(T) (96.6 %), Sphingomonas asaccharolytica NBRC 15499(T) (96.6 %) and Sphingomonas koreensis JSS26(T) (96.6 %). The 16S rRNA gene sequence similarity between strains 5413J-26(T) and KIS18-15(T) was 95.4 %. Ubiquinone 10 was the predominant respiratory quinone and homospermidine was the major polyamine. The major polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and several unidentified phospholipids and lipids. The main cellular fatty acids (>10% of the total fatty acids) of strain 5413J-26(T) were summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c), summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH) and C14 : 0 2-OH, and those of strain KIS18-15(T) were summed feature 8 and C16 : 0. Based on the results of 16S rRNA gene sequence analysis, and physiological and biochemical characterization, two novel species with the suggested names Sphingomonas aerophila sp. nov. (type strain 5413J-26(T) = KACC 16533(T) = NBRC 108942(T)) and Sphingomonas naasensis sp. nov. (type strain KIS18-15(T) = KACC 16534(T) = NBRC 108943(T)) are proposed.

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Year:  2013        PMID: 24425812     DOI: 10.1099/ijs.0.055269-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  7 in total

1.  Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants.

Authors:  Munusamy Madhaiyan; Venkatakrishnan Sivaraj Saravanan; Joseph S Wirth; Tan Hian Hwee Alex; Soo-Jin Kim; Hang-Yeon Weon; Soon-Wo Kwon; William B Whitman; Lianghui Ji
Journal:  Antonie Van Leeuwenhoek       Date:  2020-09-19       Impact factor: 2.271

2.  Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil.

Authors:  Jae-Hyung Ahn; Byoung-Chan Kim; Soo-Jin Kim; Geun-Hey Lee; Jaekyeong Song; Soon-Wo Kwon; Hang-Yeon Weon
Journal:  J Microbiol       Date:  2015-10-02       Impact factor: 3.422

3.  Complete Genome of Sphingomonas aerolata PDD-32b-11, Isolated from Cloud Water at the Summit of Puy de Dôme, France.

Authors:  Domitille Jarrige; Thierry Nadalig; Muriel Joly; Martine Sancelme; Stéphane Vuilleumier; Pierre Amato; Françoise Bringel
Journal:  Microbiol Resour Announc       Date:  2022-09-15

4.  Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae.

Authors:  Pasquale Marmo; Maria Cristina Thaller; Gustavo Di Lallo; Lucia Henrici De Angelis; Noemi Poerio; Federica De Santis; Maurizio Fraziano; Luciana Migliore; Marco Maria D'Andrea
Journal:  Viruses       Date:  2020-08-15       Impact factor: 5.048

5.  Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth.

Authors:  Sajjad Asaf; Abdul Latif Khan; Muhammad Aaqil Khan; Ahmed Al-Harrasi; In-Jung Lee
Journal:  3 Biotech       Date:  2018-08-28       Impact factor: 2.406

6.  Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing.

Authors:  Daisuke Tanaka; So Fujiyoshi; Fumito Maruyama; Motoshi Goto; Shinichi Koyama; Jun-Ichi Kanatani; Junko Isobe; Masanori Watahiki; Akihiro Sakatoku; Shigehiro Kagaya; Shogo Nakamura
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

7.  Detection of Legionella species, the influence of precipitation on the amount of Legionella DNA, and bacterial microbiome in aerosols from outdoor sites near asphalt roads in Toyama Prefecture, Japan.

Authors:  Jun-Ichi Kanatani; Masanori Watahiki; Keiko Kimata; Tomoko Kato; Kaoru Uchida; Fumiaki Kura; Junko Amemura-Maekawa; Junko Isobe
Journal:  BMC Microbiol       Date:  2021-07-17       Impact factor: 3.605

  7 in total

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