Literature DB >> 36106890

Complete Genome of Sphingomonas aerolata PDD-32b-11, Isolated from Cloud Water at the Summit of Puy de Dôme, France.

Domitille Jarrige1, Thierry Nadalig1, Muriel Joly2, Martine Sancelme2, Stéphane Vuilleumier1, Pierre Amato2, Françoise Bringel1.   

Abstract

The complete genome of Sphingomonas aerolata PDD-32b-11, a bacterium isolated from cloud water, was sequenced. It features four circular replicons, a chromosome of 3.99 Mbp, and three plasmids. Two putative rhodopsin-encoding genes were detected which might act as proton pumps to harvest light energy.

Entities:  

Year:  2022        PMID： 36106890      PMCID： PMC9584328          DOI： 10.1128/mra.00684-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  16 in total

1.  Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.

Authors:  Ivica Letunic; Peer Bork
Journal:  Bioinformatics       Date:  2006-10-18       Impact factor: 6.937

2.  Contribution of microbial activity to carbon chemistry in clouds.

Authors:  Mickaël Vaïtilingom; Pierre Amato; Martine Sancelme; Paolo Laj; Maud Leriche; Anne-Marie Delort
Journal:  Appl Environ Microbiol       Date:  2009-10-23       Impact factor: 4.792

3.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

4.  RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.

Authors:  Wenjun Li; Kathleen R O'Neill; Daniel H Haft; Michael DiCuccio; Vyacheslav Chetvernin; Azat Badretdin; George Coulouris; Farideh Chitsaz; Myra K Derbyshire; A Scott Durkin; Noreen R Gonzales; Marc Gwadz; Christopher J Lanczycki; James S Song; Narmada Thanki; Jiyao Wang; Roxanne A Yamashita; Mingzhang Yang; Chanjuan Zheng; Aron Marchler-Bauer; Françoise Thibaud-Nissen
Journal:  Nucleic Acids Res       Date:  2020-12-03       Impact factor: 16.971

5.  Potential impact of microbial activity on the oxidant capacity and organic carbon budget in clouds.

Authors:  Mickael Vaïtilingom; Laurent Deguillaume; Virginie Vinatier; Martine Sancelme; Pierre Amato; Nadine Chaumerliac; Anne-Marie Delort
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-21       Impact factor: 11.205

6.  Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas.

Authors:  Hans-Jürgen Busse; Ewald B M Denner; Sandra Buczolits; Mirja Salkinoja-Salonen; Antonio Bennasar; Peter Kämpfer
Journal:  Int J Syst Evol Microbiol       Date:  2003-09       Impact factor: 2.747

7.  MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.

Authors:  David Vallenet; Alexandra Calteau; Mathieu Dubois; Paul Amours; Adelme Bazin; Mylène Beuvin; Laura Burlot; Xavier Bussell; Stéphanie Fouteau; Guillaume Gautreau; Aurélie Lajus; Jordan Langlois; Rémi Planel; David Roche; Johan Rollin; Zoe Rouy; Valentin Sabatet; Claudine Médigue
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

8.  Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium.

Authors:  Karel Kopejtka; Jürgen Tomasch; Yonghui Zeng; Vadim Selyanin; Marko Dachev; Kasia Piwosz; Martin Tichý; David Bína; Zdenko Gardian; Boyke Bunk; Henner Brinkmann; Robert Geffers; Ruben Sommaruga; Michal Koblížek
Journal:  mSystems       Date:  2020-12-22       Impact factor: 6.496

9.  Structural characterization of proton-pumping rhodopsin lacking a cytoplasmic proton donor residue by X-ray crystallography.

Authors:  Kano Suzuki; María Del Carmen Marín; Masae Konno; Reza Bagherzadeh; Takeshi Murata; Keiichi Inoue
Journal:  J Biol Chem       Date:  2022-02-11       Impact factor: 5.157

10.  BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.

Authors:  Mosè Manni; Matthew R Berkeley; Mathieu Seppey; Felipe A Simão; Evgeny M Zdobnov
Journal:  Mol Biol Evol       Date:  2021-09-27       Impact factor: 16.240
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