| Literature DB >> 24416157 |
Lingxia Wang1, Xiao Liu2, Meng Liang2, Fanglin Tan3, Wenyu Liang4, Yiyong Chen2, Yongxiang Lin2, Li Huang3, Jianhong Xing2, Wei Chen1.
Abstract
Salt stress is a major abiotic stress that limits crop productivity in many regions of the world. A comparative proteomic approach to identify salt stress-responsive proteins and to understand the molecular mechanisms was carried out in the woody halophyte Kandelia candel. Four-leaf-old K. candel seedlings were exposed to 150 (control), 300, 450, and 600 mM NaCl for 3 days. Proteins extracted from the leaves of K. candel seedlings were separated by two-dimensional gel electrophoresis (2-DE). More than 900 protein spots were detected on each gel, and 53 differentially expressed protein spots were located with at least two-fold differences in abundance on 2-DE maps, of which 48 were identified by matrix-assisted laser desorption ionization time-of-flight/time-of-flight mass spectrometry (MALDI-TOF-TOF/MS). The results showed that K. candel could withstand up to 450 mM NaCl stress by up-regulating proteins that are mainly involved in photosynthesis, respiration and energy metabolism, Na(+) compartmentalization, protein folding and assembly, and signal transduction. Physiological data, including superoxide dismutase (SOD) and dehydroascorbate reductase (DHAR) activities, hydrogen peroxide (H2O2) and superoxide anion radicals (O2(-)) contents, as well as Na(+) content and K(+)/Na(+) ratios all correlated well with our proteomic results. This study provides new global insights into woody halophyte salt stress responses. Identification of differentially expressed proteins promotes better understanding of the molecular basis for salt stress reduction in K. candel.Entities:
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Year: 2014 PMID: 24416157 PMCID: PMC3885408 DOI: 10.1371/journal.pone.0083141
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Effect of salinity on the activites of SOD and DHAR and contents of H2O2 and O2 − in K. candel leaves.
Values (means ± SD) were determined from three independent experiments (n = 3) after plants had been treated with 150, 300, 450, and 600 mM NaCl for 3 d.
Figure 2Effect of salinity on ionic contents in K. candel leaves.
(A) Na+ and K+ concentration in leaves; (B) K+/Na+ ratio in leaves. Values (means ± SD) were determined from five independent experiments (n = 5) after plants had been treated with 150, 300, 450, and 600 mM NaCl for 3 d.
Figure 3Representative 2-DE gel images of K. candel leaves treated with NaCl.
An equal amount (1.5 mg) of total proteins was loaded on each gel strip (pH 4–7). After IEF, 12.5% SDS-PAGE gels were used for second dimension separation. Protein spots were visualized using CBB staining. The 2-DE maps of proteins from leaves of the control samples (150 mM NaCl) and the NaCl-treated samples (300, 450, and 600 mM) are presented. Proteins differentially regulated in response to salinity are numbered in pairs of control and NaCl-treated maps. Arrows indicate the 48 spots that showed significant changes in the control and NaCl-treated samples. Identification of these protein spots by MALDI-TOF-TOF-MS/MS is marked with arrows in (A) and given in Table 1.
Protein identities and their relative changes under salt stress in Kandelia candel leaves from 2D-Gel analysis.
| Spot No | Protein Name | Species | Accession No | Matched peptide sequences (m/z) | Theor. | Exp. | PS/IS | MP/TP | Cov% |
|
| |||||||||
| 13 | RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) |
| P08927 | DLINILEDAIR(1284.7329) SQYLDDIAILTGGTVIR(1835.0303) | 62.95/5.85 | 59.15/5.34 | 214/135 | 2/20 | 34% |
| 7 | Chlorophyll a–b binding protein 2,chloroplastic |
| P84990 | NRELEVIHSR(1252.7225) SAPQSIWYGPDRPK(1601.8837) | 37.99/8.2 | 27.02/4.89 | 158/116 | 2/4 | 100% |
| 14 | rubisco subunit binding-protein alpha subunit, ruba, putative |
| XP_002534347 | LADAVGLTLGPR(1182.682) | 53.17/5.25 | 58.4/4.95 | 99/79 | 1/8 | 13% |
| 16 | Rubisco subunit binding-protein alpha subunit, ruba, putative |
| XP_002534347 | LADAVGLTLGPR(1182.6986) | 53.17/5.25 | 57.58/5.08 | 139/95 | 1/11 | 23% |
| 31 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
| AAB66915 | ALRLEDLR(985.5867) DTDILSAFR(1037.5345) LEDLRIPPAYSK(1401.792) TFQGPPHGIQVER(1465.7908) LTYYTPDYETKDTDILSAFR(2412.2302) | 48.07/6.34 | 18.38/5.51 | 419/327 | 5/8 | 20% |
| 35 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit |
| AAB66915 | DNGLLLHIHR(1187.6913) EITAGFVDLLR(1233.7106) TFQGPPHGIQVER(1465.7932) | 48.07/6.34 | 31.00/6.66 | 212/184 | 3/12 | 13% |
| 37 | chlorophyll A/B binding protein, putative |
| XP_002524566 | QYFLGLEK(997.5484) WLAYGEIINGR(1291.7159) | 29.36/6.85 | 25.69/6.61 | 149/130 | 2/5 | 18% |
| 43 | Oxygen evolving enhancer protein 2 |
| BAA96364 | EVEFPGQVLR(1173.6053) QYYFLSVLTR(1289.6636) | 17.53/4.91 | 20.82/5.14 | 107/94 | 2/3 | 18% |
| 4 | plastid transketolase |
| ACF60500 | TPSILALSR(957.5609) NPYWFNR(996.4607) | 80.05/6.16 | 74.56/5.90 | 120/84 | 2/12 | 17% |
| 5 | plastid transketolase |
| ACF60500 | TPSILALSR(957.5534) NPYWFNR(996.4529) ALPTYTPESPADATR(1589.7661) | 80.05/6.16 | 74.56/5.98 | 152/115 | 3/12 | 15% |
| 6 | transketolase 1 |
| CAA75777 | NPYWFNR(996.4579) ALPTYTPESPADATR(1589.7644) | 80.05/6.16 | 74.56/6.06 | 154/128 | 2/12 | 13% |
|
| |||||||||
| 1 | aconitate hydratase 3 |
| CBE71057 | QVEIPFKPAR(1184.6525) INPLVPVDLVVDHSVQVDVAR (2284.2341) | 98.04/5.89 | 98.1/6.04 | 181/165 | 2/11 | 10% |
| 17 | enolase |
| ACG31732 | AAVPSGASTGVYEALELRDGGSDYLGK (2683.3953) | 47.9/5.67 | 52.88/5.28 | 111/85 | 1/6 | 17% |
| 18 | mitochondrial F1-ATPase beta subunit |
| ACJ06633 | VVDLLAPYQR(1173.6497) AHGGFSVFAGVGER(1390.6788) VGLTGLTVAEHFR(1399.7584) FTQANSEVSALLGR(1492.7637) IPSAVGYQPTLSTDLGGLQER (2202.1514) | 59.81/6.18 | 52.5/5.51 | 571/520 | 5/12 | 27% |
| 19 | mitochondrial F1-ATPase beta subunit |
| ACJ06633 | VVDLLAPYQR(1173.6666) AHGGFSVFAGVGER(1390.7012) VGLTGLTVAEHFR(1399.7795) FTQANSEVSALLGR(1492.7859) IPSAVGYQPTLSTDLGGLQER (2202.1875) | 59.81/6.18 | 51.31/5.58 | 554/503 | 5/12 | 24% |
| 20 | ATP synthase CF1 alpha subunit |
| YP_740460 | ERIEQYNR(1107.5598) LIESPAPGIISR(1252.7411) IAQIPVSEAYLGR(1416.808) EAYPGDVFYLHSR(1553.7662) IVNIGTVLQVGDGIAR(1624.9561) VINALAKPIDGRGEISASESR (2183.219) | 55.45/5.09 | 56.8/5.58 | 606/429 | 6/25 | 35% |
| 22 | F1 ATPase |
| BAA20135 | VGLTGLTVAEHFR(1399.7831) | 60.11/6.63 | 52.5/5.75 | 106/54 | 1/13 | 23% |
| 25 | succinate dehydrogenase, putative |
| XP_002530482 | AASTILATGGYGR(1237.6605) LGANSLLDIVVFGR(1473.856) AVIELENYGLPFSR(1607.8613) | 68.46/6.18 | 66.15/6.00 | 262/241 | 3/8 | 15% |
| 26 | Os01g0817700 (Putative phosphoglycerate mutase) |
| NP_001044625 | VHILTDGR(910.5146) FGHVTFFWNGNR(1481.7295) LPSHYLVSPPEIER(1636.8873) | 60.75/5.42 | 63.07/6.11 | 237/219 | 3/9 | 15% |
| 27 | 2,3-bisphosphoglycerate independent phosphoglycerate mutase |
| XP_002519975 | FGHVTFFWNGNR(1481.7295) LPSHYLVSPPEIER(1636.8873) | 61.15/5.52 | 59.96/5.81 | 217/163 | 2/15 | 18% |
| 32 | Fructokinase-1 |
| A2WXV8 | TALAFVTLR(991.6175) APGGAPANVAIAVAR(1334.7853) | 34.71/5.14 | 36.98/5.31 | 186/142 | 2/9 | 32% |
| 34 | Malate dehydrogenase, cytoplasmic |
| O24047 | NVIIWGNHSSTQYPDVNHATVK (2480.1733) | 35.48/6.00 | 37.02/6.41 | 77/38 | 1/3 | 15% |
| 39 | triosephosphate isomerase |
| ACJ11723 | FFVGGNWK(954.5039) | 27.19/6.00 | 25.33/6.04 | 85/48 | 1/7 | 35% |
| 45 | chloroplast superoxide dismutase |
| CAM98444 | AFVVHELEDDLGKGGHELSLTTGNAGGR (2879.5146) | 23.21/6.29 | 15.51/6.29 | 183/163 | 1/3 | 22% |
|
| |||||||||
| 36 | Dehydroascorbate reductase 1 |
| ADB85570 | EYVIAGWEPK(1191.5714) | 23.80/5.17 | 27.46/6.65 | 76/61 | 1/4 | 18% |
| 2 | vacuolar H+-ATPase |
| ABO33173 | LHEDLTSGFR(1174.604) LAADTPLLTGQR(1255.723) VGHDNLIGEIIR(1335.7715) EASIYTGITIAEYFR(1733.9414) LTTFEDSEKESEYGYVR(2053.0273) | 68.88/5.37 | 66.2/5.70 | 586/407 | 5/28 | 47% |
|
| |||||||||
| 9 | non-cell-autonomous heat shock cognate protein 70 |
| AAN86274 | NALENYAYNMR(1358.6045) STVHDVVLVGGSTR(1426.7528) TTPSYVAFTDSER(1473.6743) ARFEELNMDLFR(1540.7422) NAVVTVPAYFNDSQR(1680.8284) EQVFSTYSDNQPGVLIQVYEGER (2658.294) | 70.77/5.13 | 70.88/5.28 | 672/545 | 6/23 | 42% |
| 10 | High molecular weight heat shock protein |
| AAF34134 | NALENYAYNMR(1358.632) TTPSYVAFTDTER(1487.7235) NAVVTVPAYFNDSQR(1680.8619) EQVFSTYSDNQPGVLIQVYEGER (2658.268) | 71.17/5.17 | 72.44/5.35 | 440/332 | 4/21 | 40% |
| 11 | Hsc70 |
| AAB42159 | NALENYAYNMR(1358.632) TTPSYVAFTDTER(1487.7235) | 71.47/5.18 | 70.88/5.42 | 429/332 | 4/19 | 29% |
| NAVVTVPAYFNDSQR(1680.8619) EQVFSTYSDNQPGVLIQV YEGER(2658.3374) | |||||||||
| 12 | heat shock protein, putative |
| XP_002518324 | FESLVNHLIER(1356.7566) AVITVPAYFNDAQR(1564.8694) GVNPDEAVAMGAAIQGGILR(1939.085) GVNPDEAVAMGAAIQGGILR(1955.0647) | 71.08/6.10 | 66.2/5.56 | 276/230 | 4/14 | 23% |
| 21 | heat shock protein 60 |
| AAN63805 | APGFGENRK(975.5055) MISTSEEIAQVGTISANGER(2093.0415) | 57.73/5.26 | 58.4/5.61 | 214/123 | 2/19 | 37% |
| 46 | hypothetical protein OsI_01440 (Peptidyl-prolyl cis-trans isomerase) |
| EEC70431 | TPWLDNR(901.4586) | 25.36/8.05 | 18.16/5.86 | 86/48 | 1/7 | 32% |
|
| |||||||||
| 30 | calreticulin, putative |
| XP_002514817 | TLVLQYSIR(1092.6418) AREEEEAQR(1117.5186) | 49.78/5.81 | 47.40/6.06 | 89/74 | 2/9 | 14% |
| 44 | 14-3-3-like protein |
| NP_001105677 | DSTLIMQLLR(1189.6669) DSTLIMQLLR(1205.6462) IVSSIEQKEESR(1404.7404) TVDVEELTVEER(1418.7095) | 28.87/4.82 | 31.26/4.96 | 258/188 | 4/13 | 41% |
|
| |||||||||
| 3 | proteasome subunit beta type 6,9, putative |
| XP_002527995 | TVIINSEGVTR(1188.6373) SGSAADSQIVSDYVR(1554.7103) YFLHQHTIQLGQPATVK(1981.0228) | 24.85/5.17 | 23.03/5.45 | 365/316 | 3/8 | 50% |
| 15 | disulfide isomerase |
| ACZ95473 | SASGNLVQYDGDR(1381.61) | 10.92/4.44 | 62.08/5.01 | 77/66 | 1/2 | 15% |
| 8 | Cell division protein ftsH, putative |
| XP_002520373 | FLEYLDKDR(1198.5884) TPGFSGADLANLLNEAAILAGR (2171.1414) KVDLFENGTIAIVEAVSPELGNR (2471.3274) | 75.33/6.43 | 66.2/5.38 | 568/446 | 3/23 | 34% |
| 38 | eukaryotic translation initiation factor 5A |
| ADG27839 | TYPQQAGTIR(1134.6205) TYPQQAGTIRK(1262.715) | 17.40/5.61 | 14.84/5.63 | 116/91 | 2/5 | 24% |
| 42 | Protein kinase domain containing protein, expressed |
| ABA94760 | AAMQQRGR(917.4733) VASNCLATMDNKR(1422.6827) NVIGPQSRTKPAPHLQFR(2046.1355) | 80.25/9.98 | 31.00/6.44 | 99/0 | 3/21 | 28% |
|
| |||||||||
| 24 | phosphoglycerate dehydrogenase |
| ACJ11736 | EVFESSGGR(967.4564) GGVIDEEALVR(1157.6221) GLGMHVIAHDPYAPADR(1835.8821) | 63.78/7.14 | 60.74/5.85 | 197/171 | 3/10 | 16% |
| 28 | Ketol-acid reductoisomerase,chloroplastic |
| O82043 | DLFHLLPDAFK(1315.6791) GILLGAVHGIVESLFR(1680.9719) GILLGAVHGIVESLFRR(1837.0664) QIGVIGWGSQGPAQAQNLR(1980.0358) EINGAGINSSFGVHQDVDGR(2071.9685) | 62.81/6.62 | 58.4/6.09 | 366/306 | 5/14 | 23% |
| 40 | 3-isopropylmalate dehydratase, putative |
| XP_002530662 | NSVATGEIYPLETEVR(1777.9103) | 26.91/6.43 | 25.91/5.14 | 118/111 | 1/2 | 13% |
| 29 | AlaT1 |
| AAZ43369 | EVAEFIGRR(1076.583) GVMQILNTIIR(1257.7366) GVMQILNTIIR(1273.717) | 53.66/6.54 | 47.40/6.14 | 467/376 | 5/17 | 31% |
| HYLSLTSGGLGAYSDSR(1783.8708) IIFTNVGNPHALGQKPLTFPR(2320.3147) | |||||||||
| 48 | glutamine synthetase |
| AAX35343 | HKDHISAYGEGNER(1612.736) | 47.63/8.06 | 40.49/5.97 | 133/101 | 1/9 | 22% |
|
| |||||||||
| 23 | predicted protein |
| XP_002322147 | QLFIDGEWR(1163.5789) QLFIDGEWREPVLK(1729.9249) | 54.88/5.25 | 58.37/5.56 | 114/108 | 2/3 | 5% |
| 33 | unknown |
| ACU22776 | AAYNNPER(934.4539) NSQQFQALR(1091.5814) | 41.17/4.8 | 48.18/5.00 | 121/99 | 2/6 | 21% |
| 41 | Unknown |
| ABK96657 | GNELWYGPDR(1206.589) VDFKEPVWFK(1294.7012) GNELWYGPDRVK(1433.7603) | 24.36/4.77 | 26.13/4.85 | 134/106 | 3/6 | 17% |
| 47 | hypothetical protein |
| XP_002271 | VAGAAADILGAASHYGK (1571.8383) | 14.97/6.69 | 18.16/5.61 | 129/119 | 1/2 | 24% |
a Numbering corresponds to the 2-DE gel in Figure 3.
b The number of the predicted protein in NCBInr.
c The matched peptide sequences.
d Molecular mass and pI theoretical and experimental.
e Protein score and ion score.
f Number of matched peptides and total searched peptides.
g Percentage of predicated protein sequence with matched sequence.
Figure 4Relative expression levels of 53 differentially expressed proteins of K. candel leaves under salt stress.
Changes in protein expression under salt stress were calculated by Image Master software 5.0. Mean of relative protein abundance and standard error. Three treatments including control (150, 300, 450, 600 mM NaCl for 72 h) were performed.
Figure 5Functional classification of differentially expressed proteins identified in the seedling leaves of K. candel under salt stress.
The classification is based on KEGG (http://www.kegg.jp/kegg/pathway.html) and previous literature.
Figure 6Hierarchical clustering analysis of the 48 differentially expressed proteins from K. candel leaves under different salinity levels.
The rows represent individual proteins. The proteins that increased and decreased in abundance are indicated in red and green, respectively. Proteins not detected on control gels are indicated in gray. The intensity of the colors increases as the expression differences increase, as shown in the bar at the bottom.
Figure 7Western blot analysis of HSC 70 and DHAR expression patterns and the relative expressions on protein levels in K. candel leaves.
(A) Antibodies against HSC 70 and DHAR were used to detect the change of protein levels in leaves in response to salt stress treatment of the plants. 50 µg protein samples were loaded in each lane, separated on 12% SDS-PAGE gel, followed by Western blotting and visualized with DAB as described in Materials and Methods section; (B) Gray analysis of the results by Quantity One software and the relative expression of HSC 70 and DHAR (spots 11 and 36) were shown. Bars represent the means of the relative intensity of the protein stains of three biological replicates of the control and salt-stressed treatments (150, 300, 450 and 600 mM NaCl).
Figure 8Schematic presentation of a mechanism for salt tolerance in K. candel.
Most differentially expressed proteins were integrated, and were indicated in red (up-regulated at least under 450 mM NaCl treatment) or blue (down-regulated), respectively. Abbreviations: ADP, adenosine diphosphate; AKG, oxoglutarate; BPG, 1,3-bisphosphoglycerate; cytb6f, cytochrome b6f; DHA, dehydroascrobate; DHAP, dihydroxyacetone phosphate; EA, enolase; eIF, eukaryotic translation initiation factor; F6P, fructose-6-phosphate; FADH2, reduced flavin adenine dinucleotide; FtsH, Cell division protein ftsH; G3P, glyceraldehydes-3-phosphate; G6P, glucose-6-phosphate; GS, glutamine synthetase; GSH, reduced glutathione; GSSH, oxidized glutathione; IMD, isopropylmalate dehydratase; MDHA, monodehydroascorbate; MDHAR, MDHA reductase; NADP+/NADPH, nicotinamide adenine dinucleotide phosphate; OAA, oxaloacetic acid; PEP, phosphoenolpyruvate; PG, phosphoglycolate; PGD, phosphoglycerate dehydrogenase; PPIase, peptidyl-prolyl cis-trans isomerase; PRS, proteasome; Q, quinone; R5P, ribose-5-phosphate; Ru5P, ribulose-5-phosphate; RuBisCO, ribulose-1,5-bisphosphate carboxylase/oxygenase; RuBP, ribulose-1,5-bisphosphate; RIM, reductoisomerase; TPI, triosephosphate isomerase.