Literature DB >> 24416143

Hierarchical interactions model for predicting Mild Cognitive Impairment (MCI) to Alzheimer's Disease (AD) conversion.

Han Li1, Yashu Liu2, Pinghua Gong1, Changshui Zhang1, Jieping Ye2.   

Abstract

Identifying patients with Mild Cognitive Impairment (MCI) who are likely to convert to dementia has recently attracted increasing attention in Alzheimer's disease (AD) research. An accurate prediction of conversion from MCI to AD can aid clinicians to initiate treatments at early stage and monitor their effectiveness. However, existing prediction systems based on the original biosignatures are not satisfactory. In this paper, we propose to fit the prediction models using pairwise biosignature interactions, thus capturing higher-order relationship among biosignatures. Specifically, we employ hierarchical constraints and sparsity regularization to prune the high-dimensional input features. Based on the significant biosignatures and underlying interactions identified, we build classifiers to predict the conversion probability based on the selected features. We further analyze the underlying interaction effects of different biosignatures based on the so-called stable expectation scores. We have used 293 MCI subjects from Alzheimer's Disease Neuroimaging Initiative (ADNI) database that have MRI measurements at the baseline to evaluate the effectiveness of the proposed method. Our proposed method achieves better classification performance than state-of-the-art methods. Moreover, we discover several significant interactions predictive of MCI-to-AD conversion. These results shed light on improving the prediction performance using interaction features.

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Year:  2014        PMID: 24416143      PMCID: PMC3885394          DOI: 10.1371/journal.pone.0082450

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  10 in total

Review 1.  Mild cognitive impairment clinical trials.

Authors:  Ronald C Petersen
Journal:  Nat Rev Drug Discov       Date:  2003-08       Impact factor: 84.694

2.  Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort.

Authors:  Hua Wang; Feiping Nie; Heng Huang; Sungeun Kim; Kwangsik Nho; Shannon L Risacher; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2011-12-06       Impact factor: 6.937

3.  Double shrinking sparse dimension reduction.

Authors:  Tianyi Zhou; Dacheng Tao
Journal:  IEEE Trans Image Process       Date:  2012-06-05       Impact factor: 10.856

4.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification.

Authors:  Christos Davatzikos; Priyanka Bhatt; Leslie M Shaw; Kayhan N Batmanghelich; John Q Trojanowski
Journal:  Neurobiol Aging       Date:  2010-07-01       Impact factor: 4.673

5.  Derivation of a new ADAS-cog composite using tree-based multivariate analysis: prediction of conversion from mild cognitive impairment to Alzheimer disease.

Authors:  Daniel A Llano; Genevieve Laforet; Viswanath Devanarayan
Journal:  Alzheimer Dis Assoc Disord       Date:  2011 Jan-Mar       Impact factor: 2.703

6.  Hippocampal and entorhinal atrophy in mild cognitive impairment: prediction of Alzheimer disease.

Authors:  D P Devanand; G Pradhaban; X Liu; A Khandji; S De Santi; S Segal; H Rusinek; G H Pelton; L S Honig; R Mayeux; Y Stern; M H Tabert; M J de Leon
Journal:  Neurology       Date:  2007-03-13       Impact factor: 9.910

7.  A LASSO FOR HIERARCHICAL INTERACTIONS.

Authors:  Jacob Bien; Jonathan Taylor; Robert Tibshirani
Journal:  Ann Stat       Date:  2013-06       Impact factor: 4.028

8.  Structural MRI biomarkers for preclinical and mild Alzheimer's disease.

Authors:  Christine Fennema-Notestine; Donald J Hagler; Linda K McEvoy; Adam S Fleisher; Elaine H Wu; David S Karow; Anders M Dale
Journal:  Hum Brain Mapp       Date:  2009-10       Impact factor: 5.038

9.  Sparse learning and stability selection for predicting MCI to AD conversion using baseline ADNI data.

Authors:  Jieping Ye; Michael Farnum; Eric Yang; Rudi Verbeeck; Victor Lobanov; Nandini Raghavan; Gerald Novak; Allitia DiBernardo; Vaibhav A Narayan
Journal:  BMC Neurol       Date:  2012-06-25       Impact factor: 2.474

10.  Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning.

Authors:  Hua Wang; Feiping Nie; Heng Huang; Shannon L Risacher; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2012-06-15       Impact factor: 6.937

  10 in total
  18 in total

1.  Multi-Domain Transfer Learning for Early Diagnosis of Alzheimer's Disease.

Authors:  Bo Cheng; Mingxia Liu; Dinggang Shen; Zuoyong Li; Daoqiang Zhang
Journal:  Neuroinformatics       Date:  2017-04

Review 2.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

3.  Domain Transfer Learning for MCI Conversion Prediction.

Authors:  Bo Cheng; Mingxia Liu; Daoqiang Zhang; Brent C Munsell; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2015-03-02       Impact factor: 4.538

4.  Predicting Alzheimer's Disease Using Combined Imaging-Whole Genome SNP Data.

Authors:  Dehan Kong; Kelly S Giovanello; Yalin Wang; Weili Lin; Eunjee Lee; Yong Fan; P Murali Doraiswamy; Hongtu Zhu
Journal:  J Alzheimers Dis       Date:  2015       Impact factor: 4.472

5.  Predictors That a Diagnosis of Mild Cognitive Impairment Will Remain Stable 3 Years Later.

Authors:  Matthew A Clem; Ryan P Holliday; Seema Pandya; Linda S Hynan; Laura H Lacritz; Fu L Woon
Journal:  Cogn Behav Neurol       Date:  2017-03       Impact factor: 1.600

6.  Transfer learning for predicting conversion from mild cognitive impairment to dementia of Alzheimer's type based on a three-dimensional convolutional neural network.

Authors:  Jinhyeong Bae; Jane Stocks; Ashley Heywood; Youngmoon Jung; Lisanne Jenkins; Virginia Hill; Aggelos Katsaggelos; Karteek Popuri; Howie Rosen; M Faisal Beg; Lei Wang
Journal:  Neurobiol Aging       Date:  2020-12-13       Impact factor: 4.673

7.  Multimodal prediction of conversion to Alzheimer's disease based on incomplete biomarkers.

Authors:  Kerstin Ritter; Julia Schumacher; Martin Weygandt; Ralph Buchert; Carsten Allefeld; John-Dylan Haynes
Journal:  Alzheimers Dement (Amst)       Date:  2015-04-30

8.  Group-Level Progressive Alterations in Brain Connectivity Patterns Revealed by Diffusion-Tensor Brain Networks across Severity Stages in Alzheimer's Disease.

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Journal:  Front Aging Neurosci       Date:  2017-07-07       Impact factor: 5.750

9.  Selecting the most important self-assessed features for predicting conversion to mild cognitive impairment with random forest and permutation-based methods.

Authors:  Jaime Gómez-Ramírez; Marina Ávila-Villanueva; Miguel Ángel Fernández-Blázquez
Journal:  Sci Rep       Date:  2020-11-26       Impact factor: 4.379

10.  New Index for Multiple Chronic Conditions Predicts Functional Outcome in Ischemic Stroke.

Authors:  Xiaqing Jiang; Lu Wang; Lewis B Morgenstern; Christine T Cigolle; Edward S Claflin; Lynda D Lisabeth
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