Literature DB >> 24416086

A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies.

Line C Pouchard1, Marcia L Branstetter1, Robert B Cook1, Ranjeet Devarakonda1, Jim Green1, Giri Palanisamy1, Paul Alexander2, Natalya F Noy2.   

Abstract

Linked Science is the practice of inter-connecting scientific assets by publishing, sharing and linking scientific data and processes in end-to-end loosely coupled workflows that allow the sharing and re-use of scientific data. Much of this data does not live in the cloud or on the Web, but rather in multi-institutional data centers that provide tools and add value through quality assurance, validation, curation, dissemination, and analysis of the data. In this paper, we make the case for the use of scientific scenarios in Linked Science. We propose a scenario in river-channel transport that requires biogeochemical experimental data and global climate-simulation model data from many sources. We focus on the use of ontologies-formal machine-readable descriptions of the domain-to facilitate search and discovery of this data. Mercury, developed at Oak Ridge National Laboratory, is a tool for distributed metadata harvesting, search and retrieval. Mercury currently provides uniform access to more than 100,000 metadata records; 30,000 scientists use it each month. We augmented search in Mercury with ontologies, such as the ontologies in the Semantic Web for Earth and Environmental Terminology (SWEET) collection by prototyping a component that provides access to the ontology terms from Mercury. We evaluate the coverage of SWEET for the ORNL Distributed Active Archive Center (ORNL DAAC).

Entities:  

Keywords:  BioPortal; Linked Science; climate change; data discovery; ontologies; semantic search

Year:  2013        PMID: 24416086      PMCID: PMC3883668          DOI: 10.1007/s12145-013-0118-2

Source DB:  PubMed          Journal:  Earth Sci Inform        ISSN: 1865-0473            Impact factor:   2.878


  4 in total

1.  The National Center for Biomedical Ontology.

Authors:  Mark A Musen; Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Christopher G Chute; Margaret-Anne Story; Barry Smith
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

Review 2.  The growing human footprint on coastal and open-ocean biogeochemistry.

Authors:  Scott C Doney
Journal:  Science       Date:  2010-06-18       Impact factor: 47.728

3.  Spatiotemporal exploratory models for broad-scale survey data.

Authors:  Daniel Fink; Wesley M Hochachka; Benjamin Zuckerberg; David W Winkler; Ben Shaby; M Arthur Munson; Giles Hooker; Mirek Riedewald; Daniel Sheldon; Steve Kelling
Journal:  Ecol Appl       Date:  2010-12       Impact factor: 4.657

4.  BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.

Authors:  Patricia L Whetzel; Natalya F Noy; Nigam H Shah; Paul R Alexander; Csongor Nyulas; Tania Tudorache; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

  4 in total

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