Literature DB >> 24415827

The Crystal Structure of Oxaliplatin: A Case of Overlooked Pseudo Symmetry.

Timothy C Johnstone1.   

Abstract

The crystal structure of the anticancer drug oxaliplatin, [Pt(R,R-DACH)(oxalate)] (DACH = diaminocyclohexane), was first reported in the non-centrosymmetric space group P21, confirming the sole presence of the R,R enantiomer of the DACH ligand [M. A. Bruck et al., Inorg. Chim. Acta, 92 (1984) 279-284]. It was later proposed that the crystal structure is better described in the centrosymmetric space group P21/m, signifying the presence of the compound as a racemic mixture [A. S. Abu-Surrah et al., Polyhedron, 22 (2003) 1529-1534]. Herein is presented a reinvestigation of this crystal structure, which shows that the discrepancy between the two proposed space group assignments arises from overlooked pseudo symmetry. The crystal structures of the synthetic precursor to oxaliplatin, Pt(R,R-DACH)I2, and a platinum(IV) derivative, trans-[Pt(R,R-DACH)(oxalate)(OH)2], were also determined, and the absolute configuration of the DACH ligand in each was confirmed to be R,R. A spectroscopic investigation of the optical rotatory dispersion (ORD) of the oxaliplatin crystals was carried out to further confirm the lack of the true crystallographic mirror plane required for a P21/m solution. The ORD was theoretically simulated, in one instance, by applying the Kramers-Kronig transform to the computed circular dichroism spectrum and was found to corroborate the spectroscopic and crystallographic findings. Finally, a brief discussion is given of the importance of discussing the details of nuanced crystal structures and of providing evidence in addition to X-ray structure determination if chemically unexpected results are obtained.

Entities:  

Keywords:  Kramers-Kronig transform; Oxaliplatin; X-ray crystallography; absolute structure; optical rotatory dispersion; pseudo symmetry

Year:  2014        PMID: 24415827      PMCID: PMC3885251          DOI: 10.1016/j.poly.2013.10.003

Source DB:  PubMed          Journal:  Polyhedron        ISSN: 0277-5387            Impact factor:   3.052


  13 in total

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Journal:  Nat Rev Drug Discov       Date:  2004-01       Impact factor: 84.694

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Authors:  H D Flack; G Bernardinelli; D A Clemente; A Linden; A L Spek
Journal:  Acta Crystallogr B       Date:  2006-09-18

3.  Kramers-Kronig transformation for optical rotatory dispersion studies.

Authors:  Prasad L Polavarapu
Journal:  J Phys Chem A       Date:  2005-08-18       Impact factor: 2.781

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Journal:  Inorg Chem       Date:  1996-02-14       Impact factor: 5.165

5.  The use of X-ray crystallography to determine absolute configuration.

Authors:  H D Flack; G Bernardinelli
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Review 6.  Cellular processing of platinum anticancer drugs.

Authors:  Dong Wang; Stephen J Lippard
Journal:  Nat Rev Drug Discov       Date:  2005-04       Impact factor: 84.694

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Authors:  Jenny Z Zhang; Paul Bonnitcha; Ezequiel Wexselblatt; Alice V Klein; Yousef Najajreh; Dan Gibson; Trevor W Hambley
Journal:  Chemistry       Date:  2012-12-18       Impact factor: 5.236

8.  Relation of conformation to antitumor activity of platinum(II) complexes of 1,2-cyclohexanediamine and 2-(aminomethyl)cyclohexylamine isomers against leukemia P388.

Authors:  M Noji; K Okamoto; Y Kidani; T Tashiro
Journal:  J Med Chem       Date:  1981-05       Impact factor: 7.446

Review 9.  The resurgence of platinum-based cancer chemotherapy.

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Journal:  Nat Rev Cancer       Date:  2007-07-12       Impact factor: 60.716

10.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

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  1 in total

1.  The chiral potential of phenanthriplatin and its influence on guanine binding.

Authors:  Timothy C Johnstone; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2014-01-27       Impact factor: 15.419

  1 in total

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