Literature DB >> 24413069

Catch me if you can: how the histone chaperone FACT capitalizes on nucleosome breathing.

Maria Hondele1, Andreas G Ladurner1.   

Abstract

Nucleosomes confer a barrier to processes that require access to the eukaryotic genome such as transcription, DNA replication and repair. A variety of ATP-dependent nucleosome remodeling machines and ATP-independent histone chaperones facilitate nucleosome dynamics by depositing or evicting histones and unwrapping the DNA. It is clear that remodeling machines can use the energy from ATP to actively destabilize, translocate or disassemble nucleosomes. But how do ATP-independent histone chaperones, which "merely" bind histones, contribute to this process? Using our recent structural analysis of the conserved and essential eukaryotic histone chaperone FACT in complex with histones H2A-H2B as an example, we suggest that FACT capitalizes on transiently exposed surfaces of the nucleosome. By binding these surfaces, FACT stabilizes thermodynamically unfavorable intermediates of the intrinsically dynamic nucleosome particle. This makes the nucleosome permissive to DNA and RNA polymerases, providing temporary access, passage, and read-out.

Entities:  

Keywords:  chromatin; histone chaperone; nucleosome (reorganization); structure / crystallography; thermodynamics / kinetic of nucleosome (un)folding; transcription through chromatin

Mesh:

Substances:

Year:  2013        PMID: 24413069      PMCID: PMC3925689          DOI: 10.4161/nucl.27235

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  34 in total

1.  Nucleosome gaping supports a functional structure for the 30nm chromatin fiber.

Authors:  Julien Mozziconacci; Jean-Marc Victor
Journal:  J Struct Biol       Date:  2003-07       Impact factor: 2.867

2.  The structure of the yFACT Pob3-M domain, its interaction with the DNA replication factor RPA, and a potential role in nucleosome deposition.

Authors:  Andrew P VanDemark; Mary Blanksma; Elliott Ferris; Annie Heroux; Christopher P Hill; Tim Formosa
Journal:  Mol Cell       Date:  2006-05-05       Impact factor: 17.970

3.  Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

Authors:  Rushad Pavri; Bing Zhu; Guohong Li; Patrick Trojer; Subhrangsu Mandal; Ali Shilatifard; Danny Reinberg
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

4.  Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongation.

Authors:  Wenlai Zhou; Ping Zhu; Jianxun Wang; Gabriel Pascual; Kenneth A Ohgi; Jean Lozach; Christopher K Glass; Michael G Rosenfeld
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

5.  The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module.

Authors:  Tobias Stuwe; Michael Hothorn; Erwan Lejeune; Vladimir Rybin; Miriam Bortfeld; Klaus Scheffzek; Andreas G Ladurner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-25       Impact factor: 11.205

6.  Global analysis of functional surfaces of core histones with comprehensive point mutants.

Authors:  Kazuko Matsubara; Norihiko Sano; Takashi Umehara; Masami Horikoshi
Journal:  Genes Cells       Date:  2007-01       Impact factor: 1.891

7.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

8.  Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha.

Authors:  J Wittmeyer; L Joss; T Formosa
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

9.  Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.

Authors:  Andrew P VanDemark; Hua Xin; Laura McCullough; Robert Rawlins; Shayla Bentley; Annie Heroux; David J Stillman; Christopher P Hill; Tim Formosa
Journal:  J Biol Chem       Date:  2007-12-18       Impact factor: 5.157

10.  The chromatin-remodeling factor FACT contributes to centromeric heterochromatin independently of RNAi.

Authors:  Erwan Lejeune; Miriam Bortfeld; Sharon A White; Alison L Pidoux; Karl Ekwall; Robin C Allshire; Andreas G Ladurner
Journal:  Curr Biol       Date:  2007-07-05       Impact factor: 10.834

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  18 in total

1.  Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription.

Authors:  Chin-Chi Chen; Sarion Bowers; Zoltan Lipinszki; Jason Palladino; Sarah Trusiak; Emily Bettini; Leah Rosin; Marcin R Przewloka; David M Glover; Rachel J O'Neill; Barbara G Mellone
Journal:  Dev Cell       Date:  2015-07-06       Impact factor: 12.270

2.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

3.  Transcription Promotes the Interaction of the FAcilitates Chromatin Transactions (FACT) Complex with Nucleosomes in Saccharomyces cerevisiae.

Authors:  Benjamin J E Martin; Adam T Chruscicki; LeAnn J Howe
Journal:  Genetics       Date:  2018-09-20       Impact factor: 4.562

4.  Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae.

Authors:  Amelia J Hodges; Isaura J Gallegos; Marian F Laughery; Rithy Meas; Linh Tran; John J Wyrick
Journal:  Genetics       Date:  2015-05-12       Impact factor: 4.562

5.  Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.

Authors:  Laura L McCullough; Zaily Connell; Hua Xin; Vasily M Studitsky; Alexey V Feofanov; Maria E Valieva; Tim Formosa
Journal:  J Biol Chem       Date:  2018-03-07       Impact factor: 5.157

6.  Histone Chaperone FACT and Curaxins: Effects on Genome Structure and Function.

Authors:  Han-Wen Chang; Ekaterina V Nizovtseva; Sergey V Razin; Tim Formosa; Katerina V Gurova; Vasily M Studitsky
Journal:  J Cancer Metastasis Treat       Date:  2019-11-29

Review 7.  Structure and function of the histone chaperone FACT - Resolving FACTual issues.

Authors:  Katerina Gurova; Han-Wen Chang; Maria E Valieva; Poorva Sandlesh; Vasily M Studitsky
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-07-25       Impact factor: 4.490

8.  Nucleosome-specific, time-dependent changes in histone modifications during activation of the early growth response 1 (Egr1) gene.

Authors:  Ángela L Riffo-Campos; Josefa Castillo; Gema Tur; Paula González-Figueroa; Elena I Georgieva; José L Rodríguez; Gerardo López-Rodas; M Isabel Rodrigo; Luis Franco
Journal:  J Biol Chem       Date:  2014-11-06       Impact factor: 5.157

Review 9.  Chromatin regulation and dynamics in stem cells.

Authors:  David C Klein; Sarah J Hainer
Journal:  Curr Top Dev Biol       Date:  2019-12-30       Impact factor: 4.897

10.  FACT Disrupts Nucleosome Structure by Binding H2A-H2B with Conserved Peptide Motifs.

Authors:  David J Kemble; Laura L McCullough; Frank G Whitby; Tim Formosa; Christopher P Hill
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

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