Literature DB >> 24411258

Surface characterization of insulin protofilaments and fibril polymorphs using tip-enhanced Raman spectroscopy (TERS).

Dmitry Kurouski1, Tanja Deckert-Gaudig2, Volker Deckert3, Igor K Lednev4.   

Abstract

Amyloid fibrils are β-sheet-rich protein aggregates that are strongly associated with a variety of neurodegenerative maladies, such as Alzheimer's and Parkinson's diseases. Even if the secondary structure of such fibrils is well characterized, a thorough understanding of their surface organization still remains elusive. Tip-enhanced Raman spectroscopy (TERS) is one of a few techniques that allow the direct characterization of the amino acid composition and the protein secondary structure of the amyloid fibril surface. Herein, we investigated the surfaces of two insulin fibril polymorphs with flat (flat) and left-twisted (twisted) morphology. It was found that the two differ substantially in both amino acid composition and protein secondary structure. For example, the amounts of Tyr, Pro, and His differ, as does the number of carboxyl groups on the respective surfaces, whereas the amounts of Phe and of positively charged amino and imino groups remain similar. In addition, the surface of protofilaments, the precursors of the mature flat and twisted fibrils, was investigated using TERS. The results show substantial differences with respect to the mature fibrils. A correlation of amino acid frequencies and protein secondary structures on the surface of protofilaments and on flat and twisted fibrils allowed us to propose a hypothetical mechanism for the propagation to specific fibril polymorphs. This knowledge can shed a light on the toxicity of amyloids and define the key factors responsible for fibril polymorphism. Finally, this work demonstrates the potential of TERS for the surface characterization of amyloid fibril polymorphs.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24411258      PMCID: PMC3907223          DOI: 10.1016/j.bpj.2013.10.040

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

1.  A general model for amyloid fibril assembly based on morphological studies using atomic force microscopy.

Authors:  Ritu Khurana; Cristian Ionescu-Zanetti; Maighdlin Pope; Jie Li; Liza Nielson; Marina Ramírez-Alvarado; Lynn Regan; Anthony L Fink; Sue A Carter
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

2.  Amyloidogenic self-assembly of insulin aggregates probed by high resolution atomic force microscopy.

Authors:  Ralf Jansen; Wojciech Dzwolak; Roland Winter
Journal:  Biophys J       Date:  2004-12-01       Impact factor: 4.033

3.  3D structure of Alzheimer's amyloid-beta(1-42) fibrils.

Authors:  Thorsten Lührs; Christiane Ritter; Marc Adrian; Dominique Riek-Loher; Bernd Bohrmann; Heinz Döbeli; David Schubert; Roland Riek
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

4.  Cell wall investigations utilizing tip-enhanced Raman scattering.

Authors:  C Budich; U Neugebauer; J Popp; V Deckert
Journal:  J Microsc       Date:  2008-03       Impact factor: 1.758

5.  Ultraflat transparent gold nanoplates--ideal substrates for tip-enhanced Raman scattering experiments.

Authors:  Tanja Deckert-Gaudig; Volker Deckert
Journal:  Small       Date:  2009-04       Impact factor: 13.281

6.  Normal and reversed supramolecular chirality of insulin fibrils probed by vibrational circular dichroism at the protofilament level of fibril structure.

Authors:  Dmitry Kurouski; Rina K Dukor; Xuefang Lu; Laurence A Nafie; Igor K Lednev
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

7.  Spontaneous inter-conversion of insulin fibril chirality.

Authors:  Dmitry Kurouski; Rina K Dukor; Xuefang Lu; Laurence A Nafie; Igor K Lednev
Journal:  Chem Commun (Camb)       Date:  2012-01-12       Impact factor: 6.222

8.  Architecture and polymorphism of fibrillar supramolecular assemblies produced by in vitro aggregation of human calcitonin.

Authors:  H H Bauer; U Aebi; M Häner; R Hermann; M Müller; H P Merkle
Journal:  J Struct Biol       Date:  1995 Jul-Aug       Impact factor: 2.867

Review 9.  Abeta polymerization through interaction with membrane gangliosides.

Authors:  Katsumi Matsuzaki; Koichi Kato; Katsuhiko Yanagisawa
Journal:  Biochim Biophys Acta       Date:  2010-02-01

10.  Deposition of amyloid fibrils promotes cell-surface accumulation of amyloid beta precursor protein.

Authors:  Lorena Heredia; Rong Lin; Francisco Solá Vigo; Gabriela Kedikian; Jorge Busciglio; Alfredo Lorenzo
Journal:  Neurobiol Dis       Date:  2004-08       Impact factor: 5.996

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  13 in total

1.  Amyloid fibrils: the eighth wonder of the world in protein folding and aggregation.

Authors:  Igor K Lednev
Journal:  Biophys J       Date:  2014-04-01       Impact factor: 4.033

2.  Infrared and Raman chemical imaging and spectroscopy at the nanoscale.

Authors:  Dmitry Kurouski; Alexandre Dazzi; Renato Zenobi; Andrea Centrone
Journal:  Chem Soc Rev       Date:  2020-05-19       Impact factor: 54.564

3.  Polarized Raman Spectroscopy for Determining the Orientation of di-D-phenylalanine Molecules in a Nanotube.

Authors:  Valentin Sereda; Nicole M Ralbovsky; Milana C Vasudev; Rajesh R Naik; Igor K Lednev
Journal:  J Raman Spectrosc       Date:  2016-02-17       Impact factor: 3.133

4.  Challenges in Experimental Methods.

Authors:  Marlena E Gąsior-Głogowska; Natalia Szulc; Monika Szefczyk
Journal:  Methods Mol Biol       Date:  2022

5.  Unsaturation in the Fatty Acids of Phospholipids Drastically Alters the Structure and Toxicity of Insulin Aggregates Grown in Their Presence.

Authors:  Mikhail Matveyenka; Stanislav Rizevsky; Dmitry Kurouski
Journal:  J Phys Chem Lett       Date:  2022-05-17       Impact factor: 6.888

6.  The degree of unsaturation of fatty acids in phosphatidylserine alters the rate of insulin aggregation and the structure and toxicity of amyloid aggregates.

Authors:  Mikhail Matveyenka; Stanislav Rizevsky; Dmitry Kurouski
Journal:  FEBS Lett       Date:  2022-05-13       Impact factor: 3.864

7.  Polymorphism of amyloid fibrils formed by a peptide from the yeast prion protein Sup35: AFM and Tip-Enhanced Raman Scattering studies.

Authors:  Alexey V Krasnoslobodtsev; Tanja Deckert-Gaudig; Yuliang Zhang; Volker Deckert; Yuri L Lyubchenko
Journal:  Ultramicroscopy       Date:  2016-03-30       Impact factor: 2.689

8.  Secondary Structure and Glycosylation of Mucus Glycoproteins by Raman Spectroscopies.

Authors:  Heather S Davies; Prabha Singh; Tanja Deckert-Gaudig; Volker Deckert; Karine Rousseau; Caroline E Ridley; Sarah E Dowd; Andrew J Doig; Paul D A Pudney; David J Thornton; Ewan W Blanch
Journal:  Anal Chem       Date:  2016-11-11       Impact factor: 6.986

Review 9.  Atomic Force Microscopy Based Tip-Enhanced Raman Spectroscopy in Biology.

Authors:  Lizhen Gao; Huiling Zhao; Tianfeng Li; Peipei Huo; Dong Chen; Bo Liu
Journal:  Int J Mol Sci       Date:  2018-04-13       Impact factor: 5.923

10.  Microfluidic deposition for resolving single-molecule protein architecture and heterogeneity.

Authors:  Francesco Simone Ruggeri; Jerome Charmet; Tadas Kartanas; Quentin Peter; Sean Chia; Johnny Habchi; Christopher M Dobson; Michele Vendruscolo; Tuomas P J Knowles
Journal:  Nat Commun       Date:  2018-09-24       Impact factor: 14.919

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