Literature DB >> 24408364

SARA: a software environment for the analysis of relaxation data acquired with accordion spectroscopy.

Bradley J Harden1, Dominique P Frueh.   

Abstract

We present SARA (Software for Accordion Relaxation Analysis), an interactive and user-friendly MATLAB software environment designed for analyzing relaxation data obtained with accordion spectroscopy. Accordion spectroscopy can be used to measure nuclear magnetic resonance (NMR) relaxation rates in a fraction of the time required by traditional methods, yet data analysis can be intimidating and no unified software packages are available to assist investigators. Hence, the technique has not achieved widespread use within the NMR community. SARA offers users a selection of analysis protocols spanning those presented in the literature thus far, with modifications permitting a more general application to crowded spectra such as those of proteins. We discuss the advantages and limitations of each fitting method and suggest a protocol combining the strengths of each procedure to achieve optimal results. In the end, SARA provides an environment for facile extraction of relaxation rates and should promote routine application of accordion relaxation spectroscopy.

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Year:  2014        PMID: 24408364      PMCID: PMC4075063          DOI: 10.1007/s10858-013-9807-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  11 in total

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9.  3D accordion spectroscopy for measuring 15N and 13CO relaxation rates in poorly resolved NMR spectra.

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Journal:  J Magn Reson       Date:  1998-05       Impact factor: 2.229

10.  Direct measurements of protein backbone 15N spin relaxation rates from peak line-width using a fully-relaxed Accordion 3D HNCO experiment.

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  1 in total

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