Literature DB >> 22052503

The advantage of global fitting of data involving complex linked reactions.

Petr Herman1, J Ching Lee.   

Abstract

In this chapter, we demonstrate the advantage of the simultaneous multicurve nonlinear least-squares analysis over that of the conventional single-curve analysis. Fitting results are subjected to thorough Monte Carlo analysis for rigorous assessment of confidence intervals and parameter correlations. The comparison is performed on a practical example of simulated steady-state reaction kinetics complemented with isothermal calorimetry (ITC) data resembling allosteric behavior of rabbit muscle pyruvate kinase (RMPK). Global analysis improves accuracy and confidence limits of model parameters. Cross-correlation between parameters is also reduced with accompanying enhancement of the model-testing power. This becomes especially important for validation of models with "difficult" highly cross-correlated parameters. We show how proper experimental design and critical evaluation of data can improve the chance of differentiating models.

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Year:  2012        PMID: 22052503     DOI: 10.1007/978-1-61779-334-9_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  SARA: a software environment for the analysis of relaxation data acquired with accordion spectroscopy.

Authors:  Bradley J Harden; Dominique P Frueh
Journal:  J Biomol NMR       Date:  2014-01-10       Impact factor: 2.835

2.  Diastolic chamber properties of the left ventricle assessed by global fitting of pressure-volume data: improving the gold standard of diastolic function.

Authors:  Javier Bermejo; Raquel Yotti; Candelas Pérez del Villar; Juan C del Álamo; Daniel Rodríguez-Pérez; Pablo Martínez-Legazpi; Yolanda Benito; J Carlos Antoranz; M Mar Desco; Ana González-Mansilla; Alicia Barrio; Jaime Elízaga; Francisco Fernández-Avilés
Journal:  J Appl Physiol (1985)       Date:  2013-06-06

Review 3.  SEDPHAT--a platform for global ITC analysis and global multi-method analysis of molecular interactions.

Authors:  Huaying Zhao; Grzegorz Piszczek; Peter Schuck
Journal:  Methods       Date:  2014-12-02       Impact factor: 3.608

4.  Structure-based discovery of antagonists for GluN3-containing N-methyl-D-aspartate receptors.

Authors:  Trine Kvist; Jeremy R Greenwood; Kasper B Hansen; Stephen F Traynelis; Hans Bräuner-Osborne
Journal:  Neuropharmacology       Date:  2013-08-22       Impact factor: 5.250

5.  In vivo kinetics of U4/U6·U5 tri-snRNP formation in Cajal bodies.

Authors:  Ivan Novotný; Michaela Blažíková; David Staněk; Petr Herman; Jan Malinsky
Journal:  Mol Biol Cell       Date:  2010-12-22       Impact factor: 4.138

6.  Quantifying the relative contributions of different solute carriers to aggregate substrate transport.

Authors:  Mehdi Taslimifar; Lalita Oparija; Francois Verrey; Vartan Kurtcuoglu; Ufuk Olgac; Victoria Makrides
Journal:  Sci Rep       Date:  2017-01-16       Impact factor: 4.379

7.  Analysis of L-leucine amino acid transporter species activity and gene expression by human blood brain barrier hCMEC/D3 model reveal potential LAT1, LAT4, B0AT2 and y+LAT1 functional cooperation.

Authors:  Mehdi Taslimifar; Martin Faltys; Vartan Kurtcuoglu; François Verrey; Victoria Makrides
Journal:  J Cereb Blood Flow Metab       Date:  2021-08-24       Impact factor: 6.200

  7 in total

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