Literature DB >> 24403996

Design criteria for developing low-resource magnetic bead assays using surface tension valves.

Nicholas M Adams1, Amy E Creecy2, Catherine E Majors2, Bathsheba A Wariso2, Philip A Short2, David W Wright3, Frederick R Haselton2.   

Abstract

Many assays for biological sample processing and diagnostics are not suitable for use in settings that lack laboratory resources. We have recently described a simple, self-contained format based on magnetic beads for extracting infectious disease biomarkers from complex biological samples, which significantly reduces the time, expertise, and infrastructure required. This self-contained format has the potential to facilitate the application of other laboratory-based sample processing assays in low-resource settings. The technology is enabled by immiscible fluid barriers, or surface tension valves, which stably separate adjacent processing solutions within millimeter-diameter tubing and simultaneously permit the transit of magnetic beads across the interfaces. In this report, we identify the physical parameters of the materials that maximize fluid stability and bead transport and minimize solution carryover. We found that fluid stability is maximized with ≤0.8 mm i.d. tubing, valve fluids of similar density to the adjacent solutions, and tubing with ≤20 dyn/cm surface energy. Maximizing bead transport was achieved using ≥2.4 mm i.d. tubing, mineral oil valve fluid, and a mass of 1-3 mg beads. The amount of solution carryover across a surface tension valve was minimized using ≤0.2 mg of beads, tubing with ≤20 dyn/cm surface energy, and air separators. The most favorable parameter space for valve stability and bead transport was identified by combining our experimental results into a single plot using two dimensionless numbers. A strategy is presented for developing additional self-contained assays based on magnetic beads and surface tension valves for low-resource diagnostic applications.

Entities:  

Year:  2013        PMID: 24403996      PMCID: PMC3562276          DOI: 10.1063/1.4788922

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  16 in total

1.  Use of magnetic beads for plasma cell-free DNA extraction: toward automation of plasma DNA analysis for molecular diagnostics.

Authors:  Christine Stemmer; Michèle Beau-Faller; Erwan Pencreac'h; Eric Guerin; Anne Schneider; Didier Jaqmin; Elizabeth Quoix; Marie-Pierre Gaub; Pierre Oudet
Journal:  Clin Chem       Date:  2003-11       Impact factor: 8.327

2.  Immiscible phase nucleic acid purification eliminates PCR inhibitors with a single pass of paramagnetic particles through a hydrophobic liquid.

Authors:  Kunal Sur; Sally M McFall; Emilie T Yeh; Sujit R Jangam; Mark A Hayden; Stephen D Stroupe; David M Kelso
Journal:  J Mol Diagn       Date:  2010-06-25       Impact factor: 5.568

3.  A solid-phase method for preparing human DNA from urine for diagnostic purposes.

Authors:  Huma Siddiqui; Alexander J Nederbragt; Kjetill S Jakobsen
Journal:  Clin Biochem       Date:  2009-03-19       Impact factor: 3.281

4.  Surface tension effects on submerged electrosprays.

Authors:  Alvaro G Marín; Ignacio G Loscertales; Antonio Barrero
Journal:  Biomicrofluidics       Date:  2012-10-24       Impact factor: 2.800

5.  Microscale detection of specific bacterial DNA in soil with a magnetic capture-hybridization and PCR amplification assay.

Authors:  C S Jacobsen
Journal:  Appl Environ Microbiol       Date:  1995-09       Impact factor: 4.792

6.  Development of a low-resource RNA extraction cassette based on surface tension valves.

Authors:  Hali Bordelon; Nicholas M Adams; Amy S Klemm; Patricia K Russ; John V Williams; H Keipp Talbot; David W Wright; Frederick R Haselton
Journal:  ACS Appl Mater Interfaces       Date:  2011-05-31       Impact factor: 9.229

7.  One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST).

Authors:  Scott M Berry; Elaine T Alarid; David J Beebe
Journal:  Lab Chip       Date:  2011-03-21       Impact factor: 6.799

8.  Formation of multilayered biopolymer microcapsules and microparticles in a multiphase microfluidic flow.

Authors:  Elisabeth Rondeau; Justin J Cooper-White
Journal:  Biomicrofluidics       Date:  2012-05-24       Impact factor: 2.800

9.  High throughput screening for spores and vegetative forms of pathogenic B. anthracis by an internally controlled real-time PCR assay with automated DNA preparation.

Authors:  Marcus Panning; Stefanie Kramme; Nadine Petersen; Christian Drosten
Journal:  Med Microbiol Immunol       Date:  2006-11-09       Impact factor: 3.402

Review 10.  Magnetic separation techniques in diagnostic microbiology.

Authors:  O Olsvik; T Popovic; E Skjerve; K S Cudjoe; E Hornes; J Ugelstad; M Uhlén
Journal:  Clin Microbiol Rev       Date:  1994-01       Impact factor: 26.132

View more
  10 in total

1.  Phase Diagram Characterization Using Magnetic Beads as Liquid Carriers.

Authors:  Nicholas Blumenschein; Daewoo Han; Andrew J Steckl
Journal:  J Vis Exp       Date:  2015-09-04       Impact factor: 1.355

2.  A negative-pressure-driven microfluidic chip for the rapid detection of a bladder cancer biomarker in urine using bead-based enzyme-linked immunosorbent assay.

Authors:  Yen-Heng Lin; Ying-Ju Chen; Chao-Sung Lai; Yi-Ting Chen; Chien-Lun Chen; Jau-Song Yu; Yu-Sun Chang
Journal:  Biomicrofluidics       Date:  2013-03-07       Impact factor: 2.800

3.  A two-magnet strategy for improved mixing and capture from biofluids.

Authors:  Thomas F Scherr; Hayley B Ryskoski; Andrew B Doyle; Frederick R Haselton
Journal:  Biomicrofluidics       Date:  2016-04-11       Impact factor: 2.800

4.  Magnetically-enabled biomarker extraction and delivery system: towards integrated ASSURED diagnostic tools.

Authors:  Westley S Bauer; Danielle W Kimmel; Nicholas M Adams; Lauren E Gibson; Thomas F Scherr; Kelly A Richardson; Joseph A Conrad; Hellen K Matakala; Frederick R Haselton; David W Wright
Journal:  Analyst       Date:  2017-05-02       Impact factor: 4.616

5.  Tuberculosis Biomarker Extraction and Isothermal Amplification in an Integrated Diagnostic Device.

Authors:  Amy Creecy; Patricia K Russ; Francesca Solinas; David W Wright; Frederick R Haselton
Journal:  PLoS One       Date:  2015-07-01       Impact factor: 3.240

6.  Direct Detection of Unamplified Pathogen RNA in Blood Lysate using an Integrated Lab-in-a-Stick Device and Ultrabright SERS Nanorattles.

Authors:  Hoan T Ngo; Elizabeth Freedman; Ren Abelard Odion; Pietro Strobbia; Agampodi Swarnapali De Silva Indrasekara; Priya Vohra; Steve M Taylor; Tuan Vo-Dinh
Journal:  Sci Rep       Date:  2018-03-06       Impact factor: 4.379

Review 7.  Magnetic particles for integrated nucleic acid purification, amplification and detection without pipetting.

Authors:  Yanju Chen; Yang Liu; Ya Shi; Jianfeng Ping; Jian Wu; Huan Chen
Journal:  Trends Analyt Chem       Date:  2020-05-06       Impact factor: 12.296

8.  Development of an Automated, Non-Enzymatic Nucleic Acid Amplification Test.

Authors:  Zackary A Zimmers; Alexander D Boyd; Hannah E Stepp; Nicholas M Adams; Frederick R Haselton
Journal:  Micromachines (Basel)       Date:  2021-09-30       Impact factor: 3.523

Review 9.  Pathogenicity and virulence mechanisms of Lassa virus and its animal modeling, diagnostic, prophylactic, and therapeutic developments.

Authors:  Hannah L Murphy; Hinh Ly
Journal:  Virulence       Date:  2021-12       Impact factor: 5.882

10.  A magnetic bead-based method for concentrating DNA from human urine for downstream detection.

Authors:  Hali Bordelon; Patricia K Russ; David W Wright; Frederick R Haselton
Journal:  PLoS One       Date:  2013-07-08       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.