Literature DB >> 24403576

A conformational transition observed in single HIV-1 Gag molecules during in vitro assembly of virus-like particles.

James B Munro1, Abhinav Nath, Michael Färber, Siddhartha A K Datta, Alan Rein, Elizabeth Rhoades, Walther Mothes.   

Abstract

UNLABELLED: The conformational changes within single HIV-1 Gag molecules that occur during assembly into immature viruses are poorly understood. Using an in vitro assembly assay, it has been proposed that HIV-1 Gag undergoes a conformational transition from a compact conformation in solution to an extended rod-like conformation in virus-like particles (VLPs). Here we used single-molecule Förster resonance energy transfer (smFRET) to test this model by directly probing the conformation of single HIV-1 Gag molecules. We demonstrate that monomeric HIV-1 Gag lacking the p6 domain and the N-terminal myristoyl moiety is found in solution predominantly in a compact conformation. Gag in this conformation, and in the presence of nucleic acid, assembles into 30-nm-diameter particles. However, with the addition of inositol hexakisphosphate, Gag adopts a linear conformation and assembles into full-sized ∼100-to-150-nm-diameter VLPs. Parallel fluorescence correlation spectroscopy measurements show that this conformational transition occurs early in the assembly process when Gag oligomers are small, perhaps as early as upon dimerization. Thus, smFRET measurements confirm that HIV-1 Gag transitions from a compact to a linear conformation during the formation of VLPs. Our results are consistent with a model whereby binding of HIV-1 Gag to phosphoinositides at the plasma membrane stabilizes an extended conformation and promotes oligomerization into the radially aligned immature capsid. IMPORTANCE: The establishment of single-molecule fluorescence techniques reveals the conformational state of individual HIV-1 Gag molecules prior to and during in vitro assembly into virus-like particles. The data demonstrate that Gag in distinct conformations forms particles with different morphologies. In the compact conformation, in the presence of nucleic acid, Gag forms spherical particles of a diameter of approximately 30 nm. In the extended conformation, Gag forms spherical virus-like particles of approximately 100-nm diameter. The adoption of the extended conformation required the presence of inositol hexakisphosphate in addition to nucleic acid. Our results are consistent with a model whereby binding of HIV-1 Gag to phosphoinositides at the plasma membrane stabilizes an extended conformation and promotes oligomerization into the radially aligned immature capsid.

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Year:  2014        PMID: 24403576      PMCID: PMC3957938          DOI: 10.1128/JVI.03353-13

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  33 in total

1.  Single-molecule fluorescence spectroscopy using phospholipid bilayer nanodiscs.

Authors:  Abhinav Nath; Adam J Trexler; Peter Koo; Andrew D Miranker; William M Atkins; Elizabeth Rhoades
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

2.  Allostery in a disordered protein: oxidative modifications to α-synuclein act distally to regulate membrane binding.

Authors:  Eva Sevcsik; Adam J Trexler; Joanna M Dunn; Elizabeth Rhoades
Journal:  J Am Chem Soc       Date:  2011-04-14       Impact factor: 15.419

3.  Structure and assembly of immature HIV.

Authors:  J A G Briggs; J D Riches; B Glass; V Bartonova; G Zanetti; H-G Kräusslich
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

Review 4.  Diverse interactions of retroviral Gag proteins with RNAs.

Authors:  Alan Rein; Siddhartha A K Datta; Christopher P Jones; Karin Musier-Forsyth
Journal:  Trends Biochem Sci       Date:  2011-05-06       Impact factor: 13.807

Review 5.  Structural determinants and mechanism of HIV-1 genome packaging.

Authors:  Kun Lu; Xiao Heng; Michael F Summers
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

Review 6.  Molecular determinants that regulate plasma membrane association of HIV-1 Gag.

Authors:  Vineela Chukkapalli; Akira Ono
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

7.  HIV-1 Gag extension: conformational changes require simultaneous interaction with membrane and nucleic acid.

Authors:  Siddhartha A K Datta; Frank Heinrich; Sindhu Raghunandan; Susan Krueger; Joseph E Curtis; Alan Rein; Hirsh Nanda
Journal:  J Mol Biol       Date:  2010-12-04       Impact factor: 5.469

8.  Opposing mechanisms involving RNA and lipids regulate HIV-1 Gag membrane binding through the highly basic region of the matrix domain.

Authors:  Vineela Chukkapalli; Seung J Oh; Akira Ono
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

9.  Analysis of the initiating events in HIV-1 particle assembly and genome packaging.

Authors:  Sebla B Kutluay; Paul D Bieniasz
Journal:  PLoS Pathog       Date:  2010-11-18       Impact factor: 6.823

10.  Alpha-synuclein binds large unilamellar vesicles as an extended helix.

Authors:  Adam J Trexler; Elizabeth Rhoades
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

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  33 in total

1.  HIV-1 Pr55Gag binds genomic and spliced RNAs with different affinity and stoichiometry.

Authors:  Serena Bernacchi; Ekram W Abd El-Wahab; Noé Dubois; Marcel Hijnen; Redmond P Smyth; Johnson Mak; Roland Marquet; Jean-Christophe Paillart
Journal:  RNA Biol       Date:  2016-11-14       Impact factor: 4.652

2.  The C-terminal p6 domain of the HIV-1 Pr55Gag precursor is required for specific binding to the genomic RNA.

Authors:  Noé Dubois; Keith K Khoo; Shannon Ghossein; Tanja Seissler; Philippe Wolff; William J McKinstry; Johnson Mak; Jean-Christophe Paillart; Roland Marquet; Serena Bernacchi
Journal:  RNA Biol       Date:  2018-08-04       Impact factor: 4.652

3.  Solution Conformation of Bovine Leukemia Virus Gag Suggests an Elongated Structure.

Authors:  Dominic F Qualley; Sarah E Cooper; James L Ross; Erik D Olson; William A Cantara; Karin Musier-Forsyth
Journal:  J Mol Biol       Date:  2019-02-04       Impact factor: 5.469

4.  HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal.

Authors:  Samantha Sarni; Banhi Biswas; Shuohui Liu; Erik D Olson; Jonathan P Kitzrow; Alan Rein; Vicki H Wysocki; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2020-08-13       Impact factor: 5.157

5.  HIV-1 matrix-31 membrane binding peptide interacts differently with membranes containing PS vs. PI(4,5)P2.

Authors:  Lauren O'Neil; Kathryn Andenoro; Isabella Pagano; Laura Carroll; Leah Langer; Zachary Dell; Davina Perera; Bradley W Treece; Frank Heinrich; Mathias Lösche; John F Nagle; Stephanie Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2016-09-15

6.  The HIV-1 nucleocapsid protein recruits negatively charged lipids to ensure its optimal binding to lipid membranes.

Authors:  Noémie Kempf; Viktoriia Postupalenko; Saurabh Bora; Pascal Didier; Youri Arntz; Hugues de Rocquigny; Yves Mély
Journal:  J Virol       Date:  2014-11-19       Impact factor: 5.103

Review 7.  HIV-1 Gag as an Antiviral Target: Development of Assembly and Maturation Inhibitors.

Authors:  Paul Spearman
Journal:  Curr Top Med Chem       Date:  2016       Impact factor: 3.295

Review 8.  Retroviral Gag protein-RNA interactions: Implications for specific genomic RNA packaging and virion assembly.

Authors:  Erik D Olson; Karin Musier-Forsyth
Journal:  Semin Cell Dev Biol       Date:  2018-04-01       Impact factor: 7.727

9.  Antigenicity and Immunogenicity of HIV-1 Envelope Trimers Complexed to a Small-Molecule Viral Entry Inhibitor.

Authors:  S Munir Alam; Kenneth Cronin; Robert Parks; Kara Anasti; Haitao Ding; Eden P Go; Heather Desaire; Amanda Eaton; David Montefiori; Joseph Sodroski; John Kappes; Barton F Haynes; Kevin O Saunders
Journal:  J Virol       Date:  2020-10-14       Impact factor: 5.103

10.  Illuminating the virus life cycle with single-molecule FRET imaging.

Authors:  Maolin Lu; Xiaochu Ma; Walther Mothes
Journal:  Adv Virus Res       Date:  2019-08-20       Impact factor: 9.937

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