| Literature DB >> 24400879 |
Yasushi Horimasu, Noboru Hattori1, Nobuhisa Ishikawa, Sonosuke Tanaka, Francesco Bonella, Shinichiro Ohshimo, Josune Guzman, Ulrich Costabel, Nobuoki Kohno.
Abstract
BACKGROUND: Surfactant protein A (SP-A) and SP-D are clinically established in Japan as serum biomarkers for diagnosing interstitial lung diseases (ILDs). Serum SP-D levels are affected by genetic variants. We conducted the present study to examine whether serum SP-A and/or SP-D levels in healthy subjects (HS) and patients with ILDs differ between populations with different genetic backgrounds.Entities:
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Year: 2014 PMID: 24400879 PMCID: PMC3893448 DOI: 10.1186/1471-2350-15-4
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Functional features of the gene. The thick horizontal bar represents the intronic region, and the white boxes represent exons. S, signal peptide; NTD, N-terminal domain; C, collagen domain; α, α-helical neck region; CRD, carbohydrate recognition domain.
Characteristics of study subjects
| | | | |
| Number of the subjects | 138 | 94 | |
| Age (years) | 67.4 ± 0.8 | 68.0 ± 1.0 | 0.982 |
| Gender (male/female) | 88 (63.8%)/50 (36.2%) | 64 (68.1%)/30 (31.9%) | 0.497 |
| Smoking (Cu/Ex/Non/ND) | 14 (10.1%)/54 (39.1%)/ | 11 (11.7%)/46 (49.0%)/ | 0.297 |
| 64 (46.4%)/6 (4.4%) | 35 (37.2%)/2 (2.1%) | | |
| VC (percent predicted) | 66.1 ± 1.6 | 70.3 ± 2.2 | 0.163 |
| DLCO (percent predicted) | 47.7 ± 1.6 | 44.8 ± 1.8 | 0.255 |
| Diagnostic category (IPF/NSIP) | 94 (68.1%)/44 (31.9%) | 61 (64.9%)/33 (35.1%) | 0.609 |
| | | | |
| Number of the subjects | 165 | 275 | |
| Age (years) | 36.5 ± 0.9 | 49.8 ± 0.4 | < 0.001 |
| Gender (male/female) | 60 (36.4%)/105 (63.6%) | 227 (82.5%)/48 (17.5%) | < 0.001 |
| Smoking (Cu/Ex/Non/ND) | 41 (24.8%)/20 (12.1%)/ | 82 (29.8%)/62 (22.6%)/ | 0.026 |
| 90 (54.6%)/14 (8.5%) | 131 (47.6%)/0 (0.0%) |
Data are shown as mean ± SEM.
Statistical significance was tested by Mann–Whitney U-test or Chi-square test.
Cu, Current smoker; Ex, Ex-smoker; Non, Non-smoker; ND, No data; IIPs, Idiopathic interstitial pneumonias; VC, Vital capacity; DL , Diffusing capacity of the lung for carbon monoxide; IPF, Idiopathic pulmonary fibrosis; NSIP, Nonspecific interstitial pneumonia.
Figure 2Comparison of serum SP-A and SP-D levels between the cohorts. (A) Serum SP-A and (B) SP-D levels in German and Japanese cohorts. Receiver operating characteristic (ROC) curves of (C) serum SP-A and (D) SP-D in German (left panel) and Japanese (right panel) cohorts. The horizontal bars represent the mean values. The significance level was defined α = 0.013 (four comparisons in four groups). ***p < 0.001, **p < 0.013 (Mann–Whitney U-test).
Genotype distributions of single nucleotide polymorphisms in gene – patients with IIPs vs HS –
| Total | C/C | T/C | T/T | HWE | Total | C/C | T/C | T/T | HWE | |
| Patients with IIPs | 102 | 25 | 47 | 30 | 0.862 | 63 | 19 | 30 | 14 | 0.973 |
| (24.5%) | (46.1%) | (29.4%) | (30.2%) | (47.6%) | (22.2%) | |||||
| Healthy subjects | 37 | 9 | 11 | 17 | 0.266 | 275 | 95 | 136 | 44 | 0.960 |
| (24.3%) | (29.7%) | (46.0%) | (34.5%) | (49.5%) | (16.0%) | |||||
| Chi-square test | | | | | ||||||
| Total | C/C | T/C | T/T | HWE | Total | C/C | T/C | T/T | HWE | |
| Patients with IIPs | 102 | 3 | 18 | 81 | 0.655 | 63 | 6 | 35 | 22 | 0.561 |
| (2.9%) | (17.7%) | (79.4%) | (9.5%) | (55.6%) | (34.9%) | |||||
| Healthy subjects | 37 | 0 | 5 | 32 | 0.913 | 275 | 57 | 125 | 93 | 0.679 |
| (0.0%) | (13.5%) | (86.5%) | (20.7%) | (45.5%) | (33.8%) | |||||
| Chi-square test | | | | | ||||||
| Total | C/C | T/C | T/T | HWE | Total | C/C | T/C | T/T | HWE | |
| Patients with IIPs | 102 | 43 | 45 | 14 | 0.960 | 63 | 28 | 28 | 7 | 1.000 |
| (42.2%) | (44.1%) | (13.7%) | (44.4%) | (44.4%) | (11.1%) | |||||
| Healthy subjects | 37 | 13 | 15 | 9 | 0.741 | 275 | 140 | 113 | 22 | 0.996 |
| (35.1%) | (40.6%) | (24.3%) | (50.9%) | (41.1%) | (8.0%) | |||||
| Chi-square test | | | | | ||||||
| Total | A/A | A/T | T/T | HWE | Total | A/A | A/T | T/T | HWE | |
| Patients with IIPs | 102 | 86 | 16 | 0 | 0.711 | 63 | 59 | 4 | 0 | 0.968 |
| (84.3%) | (15.7%) | (0.0%) | (93.7%) | (6.3%) | (0.0%) | |||||
| Healthy subjects | 37 | 32 | 5 | 0 | 0.913 | 275 | 265 | 10 | 0 | 0.955 |
| (86.5%) | (13.5%) | (0.0%) | (96.4%) | (3.6%) | (0.0%) | |||||
| Chi-square test | ||||||||||
IIPs, Idiopathic interstitial pneumonias; HWE, Hardy-Weinberg equilibrium.
Figure 3Relationship between genotype and serum SP-D levels. Serum SP-D levels were compared between each genotype: (A) rs721917, (B) rs1998374, (C) rs2243639, and (D) rs3088308. For each genotype, data of the German cohort are shown in the left and those of the Japanese cohort are shown in the right. The horizontal bars represent the mean values. (A), (B), (C) The significance level was defined as α = 0.006 (nine comparisons in six groups). ***p < 0.001, **p < 0.006 (Mann–Whitney U-test). (D) The significance level was defined as α = 0.0125 (four comparisons in four groups). ***p < 0.001, **p < 0.013 (Mann–Whitney U-test).
Correlations between serum SP-D levels and gene polymorphisms
| | | | ||
| | C/C vs T/C vs T/T | 55.276 (28.473 – 82.079) | < 0.001 | |
| | | | | |
| | C/C vs T/C vs T/T | 35.149 (15.341 – 54.957) | < 0.001 | 1.031 |
| | Age | -0.444 (-2.009 – 1.121) | 0.578 | 1.978 |
| | Japanese vs German | 24.061 (-13.125 – 61.246) | 0.204 | 1.437 |
| | HS vs patients with IIPs | 307.740 (260.743 – 354.736) | < 0.001 | 2.515 |
| | | | ||
| | C/C vs T/C vs T/T | 86.550 (59.832 – 113.269) | < 0.001 | |
| | | | | |
| | C/C vs T/C vs T/T | 36.172 (14.289 – 58.056) | 0.001 | 1.203 |
| | Age | -0.353 (-1.918 – 1.213) | 0.658 | 1.972 |
| | Japanese vs German | 11.114 (-28.165 – 50.393) | 0.578 | 1.598 |
| | HS vs patients with IIPs | 304.645 (257.602 – 351.689) | < 0.001 | 2.511 |
| | | | ||
| | C/C vs T/C vs T/T | 38.179 (8.965 – 67.393) | 0.011 | |
| | | | | |
| | C/C vs T/C vs T/T | 22.707 (1.310 – 44.104) | 0.038 | 1.017 |
| | Age | -0.360 (-0.449 – 0.654) | 0.654 | 1.976 |
| | Japanese vs German | 29.314 (-8.000 – 66.627) | 0.123 | 1.423 |
| | HS vs patients with IIPs | 306.421 (259.045 – 353.798) | < 0.001 | 2.514 |
| | | | ||
| A/A vs A/T | 37.750 (-37.732 – 113.231) | 0.326 |
The genotypes of each single nucleotide polymorphism are arranged in the order of lowest to highest serum SP-D levels.
CI, Confidence interval; HS, Healthy subjects; IIPs, Idiopathic interstitial pneumonias; VIF, Variance inflation factor.