| Literature DB >> 24400107 |
Yiqi Fu1, Jingjin Jiang2, Hua Zhou1, Yan Jiang3, Ying Fu3, Yunsong Yu3, Jianying Zhou1.
Abstract
BACKGROUND/Entities:
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Year: 2014 PMID: 24400107 PMCID: PMC3882262 DOI: 10.1371/journal.pone.0084680
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Basic information, epidemiological features and resistant genes of Acinetobacter spp. included in this studya.
| Strain | Species | Hospital (Cities) | Year | PFGEtype | ST | allelic profiles |
| ESBLgenes |
| AP04 |
| HZ (Hangzhou) | 2009 | A | ND | – |
| Neg |
| AP25 |
| TZ (Taizhou) | 2009 | A | ND | – |
| Neg |
| AN113 |
| WZ (Wenzhou) | 2009 | B | ND | – |
| Neg |
| AN116 |
| WZ (Wenzhou) | 2009 | B | ND | – |
| Neg |
| AN119 |
| WZ (Wenzhou) | 2009 | C | ND | – |
| Neg |
| WA3 |
| WHC (Wuhan) | 2008 | E | 363 | 51-54-49-11-48-25-4 |
|
|
| WA8 |
| WHC (Wuhan) | 2008 | E | 363 | 51-54-49-11-48-25-4 |
|
|
| WH8144 |
| WH (Wuhan) | 2010 | D | 91 | 22-15-13-12-4-62-2 |
| Neg |
| JH01 |
| JH (Jinhua) | 2005 | D | 91 | 22-15-13-12-4-62-2 |
| Neg |
| JH02 |
| JH (Jinhua) | 2005 | D | 91 | 22-15-13-12-4-62-2 |
| Neg |
| AB212 |
| JH (Jinhua) | 2009 | D | 91 | 22-15-13-12-4-62-2 |
| Neg |
| AB222 |
| JH (Jinhua) | 2009 | D | 91 | 22-15-13-12-4-62-2 |
| Neg |
| LS0148 |
| LS (Lishui) | 2005 | ND | 20 | 1-15-13-12-4-12-2 |
| Neg |
a Abbreviations: HZ, Hangzhou First hospital; TZ, Taizhou Hospital; WZ, The First Affiliated Hospital of Wenzhou Medical College; WHC, Wuhan Children Hospital; WH, Wuhan Tongji Hospital; JH, Jinhua Center Hospital; LS, Lishui People Hospital; ND: not defined; Neg: negative; Pos: positive.
b Seven loci in the order of gltA-gyrB-gdhB-recA-cpn60-gpi-rpoD.
The sizes and replicon types of bla OXA-58-harboring plasmids, genetic contexts of bla OXA-58, and MICs (mg/L) of represented strainsa.
| Isolates | Plasmidsize (kb) |
| Geneticcontextsof | IPM | MEM | FEP | CAZ | CTX | SAM | TZP | TIC | GEN | AMK | MIN | CIP |
| AP04 | 93 |
| A | 0.5 | 0.5 | 4 | 4 | 16 | 4 | 32 | >256 | 64 | 2 | <0.125 | <0.125 |
| AP25 | 52 |
| A | 1 | 0.5 | 2 | 4 | 16 | 2 | 16 | >256 | 2 | 2 | <0.125 | <0.125 |
| AN113 | 143 |
| A | 0.5 | 1 | 4 | 4 | 16 | 1 | 16 | >256 | >256 | 4 | 4 | 0.5 |
| AN116 | 143 |
| A | 1 | 2 | 16 | 8 | 32 | 16 | 128 | >256 | >256 | 4 | 4 | 0.25 |
| AN119 | 76 |
| D | 4 | 2 | 4 | 8 | 16 | 4 | 64 | >256 | 128 | 4 | 0.5 | 0.25 |
| WA3 | 101 |
| C | >32 | 8 | 256 | >256 | >256 | 64 | 256 | >256 | 64 | 16 | <0.125 | <0.125 |
| WH8144 | 55 | – | B | >32 | >32 | 128 | 32 | 64 | 128 | >256 | >256 | >256 | 256 | 64 | 64 |
| JH01 | 55 | GR8 | B | >32 | >32 | 256 | 128 | 256 | 128 | >256 | >256 | >256 | >256 | 64 | 16 |
| AB212 | 55 | – | B | >32 | >32 | 32 | 64 | 128 | 32 | >256 | >256 | >256 | >256 | 32 | 16 |
| LS0148 | – | [GR3, GR7] | – | 0.5 | 0.5 | 2 | 4 | 16 | 2 | 16 | 16 | 1 | 2 | 8 | 16 |
| TAP04 | 93 |
| A | 2 | 2 | 4 | 8 | 16 | 4 | 64 | >256 | 16 | 2 | 8 | 32 |
| TAP25 | 52 |
| A | 2 | 1 | 4 | 8 | 16 | 4 | 64 | >256 | 4 | 4 | 8 | 32 |
| TAN113 | 143 |
| A | 1 | 1 | 4 | 8 | 16 | 2 | 32 | >256 | >256 | 4 | 4 | 32 |
| TAN116 | 143 |
| A | 1 | 2 | 4 | 4 | 16 | 2 | 16 | >256 | >256 | 4 | 4 | 32 |
| TAN119 | 76 |
| D | 16 | 16 | 4 | 8 | 16 | 16 | 256 | >256 | 64 | 4 | 8 | 32 |
| TWA3 | 101 |
| C | 16 | 8 | 4 | 8 | 16 | 16 | 256 | >256 | 1 | 2 | 8 | 16 |
| TWH8144 | 55 | [GR3, GR7] | B | 8 | 4 | 4 | 8 | 16 | 8 | 128 | >256 | 256 | 128 | 8 | 16 |
| TJH01 | 55 | [GR3, GR7] | B | 8 | 4 | 4 | 8 | 16 | 8 | 128 | >256 | 256 | 128 | 8 | 16 |
| TAB212 | 55 | [GR3, GR7] | B | 16 | 4 | 4 | 8 | 16 | 8 | 256 | >256 | 256 | 128 | 8 | 16 |
a IPM, imipenem; MEM, meropenem; FEP, cefepime; CAZ, ceftazidime; CTX, cefotaxime; SAM, ampicillin/sulbactam; TZP, piperacillin/tazobactam; TIC, ticarcillin; GEN, gentamicin; AMK, amikacin; MIN, minocycline; CIP, ciprofloxacin.
b The isolates with names starting with alphabet T- were transformants;
c Brackets indicate that GR3 and GR7 replicases are present in the recipient strain LS0148.
d The alphabet corresponded to four kinds of genetic structure displayed in Figure 1.
Figure 1Schematic map of the genetic contexts of bla OXA-58.
Structure A (AP04, AP25, AN113 and AN116); Structure B (WH8144, JH01, JH02, AB212 and AB222); Structure C (WA3 and WA8); Structure D (AN119). The dash line indicates the truncated positions of ISAba3-like element. The thick vertical lines indicate the Re27 recombination points. The location and orientation of primers are indicated by arrows and numbers, being consistent with Table 2. orf1, DNA-binding response regulator gene; orf2, putative exodeoxyribonuclease VII large subunit gene; orf3, ParA family protein gene; orf4, putative inner membrane protein gene; orf5, putative chromate transporter gene; orf6, putative cytoplasmic protein gene. GenBank accession No.: A, JQ241790; B, JQ241792; C, JQ241791; D, JQ241789. The figure is not to scale.