Literature DB >> 24387789

A de novo convergence of autism genetics and molecular neuroscience.

Niklas Krumm1, Brian J O'Roak1, Jay Shendure1, Evan E Eichler2.   

Abstract

Autism spectrum disorder (ASD) and intellectual disability (ID) are neurodevelopmental disorders with large genetic components, but identification of pathogenic genes has proceeded slowly because hundreds of loci are involved. New exome sequencing technology has identified novel rare variants and has found that sporadic cases of ASD/ID are enriched for disruptive de novo mutations. Targeted large-scale resequencing studies have confirmed the significance of specific loci, including chromodomain helicase DNA binding protein 8 (CHD8), sodium channel, voltage-gated, type II, alpha subunit (SCN2A), dual specificity tyrosine-phosphorylation-regulated kinase 1A (DYRK1A), and catenin (cadherin-associated protein), beta 1, 88 kDa (CTNNB1, beta-catenin). We review recent studies and suggest that they have led to a convergence on three functional pathways: (i) chromatin remodeling; (ii) wnt signaling during development; and (iii) synaptic function. These pathways and genes significantly expand the neurobiological targets for study, and suggest a path for future genetic and functional studies.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  autism genetics; autism spectrum disorder; copy number variant; exome sequencing; intellectual disability; single nucleotide variant

Mesh:

Year:  2013        PMID: 24387789      PMCID: PMC4077788          DOI: 10.1016/j.tins.2013.11.005

Source DB:  PubMed          Journal:  Trends Neurosci        ISSN: 0166-2236            Impact factor:   13.837


  89 in total

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2.  Polarized targeting of neurexins to synapses is regulated by their C-terminal sequences.

Authors:  Richard Fairless; Henriette Masius; Astrid Rohlmann; Katharina Heupel; Mohiuddin Ahmad; Carsten Reissner; Thomas Dresbach; Markus Missler
Journal:  J Neurosci       Date:  2008-11-26       Impact factor: 6.167

3.  Interpreting the role of de novo protein-coding mutations in neuropsychiatric disease.

Authors:  Jacob Gratten; Peter M Visscher; Bryan J Mowry; Naomi R Wray
Journal:  Nat Genet       Date:  2013-03       Impact factor: 38.330

4.  Diagnostic genome profiling in mental retardation.

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Journal:  Am J Hum Genet       Date:  2005-08-30       Impact factor: 11.025

5.  De novo truncating mutations in E6-AP ubiquitin-protein ligase gene (UBE3A) in Angelman syndrome.

Authors:  T Matsuura; J S Sutcliffe; P Fang; R J Galjaard; Y H Jiang; C S Benton; J M Rommens; A L Beaudet
Journal:  Nat Genet       Date:  1997-01       Impact factor: 38.330

6.  De novo gene disruptions in children on the autistic spectrum.

Authors:  Ivan Iossifov; Michael Ronemus; Dan Levy; Zihua Wang; Inessa Hakker; Julie Rosenbaum; Boris Yamrom; Yoon-Ha Lee; Giuseppe Narzisi; Anthony Leotta; Jude Kendall; Ewa Grabowska; Beicong Ma; Steven Marks; Linda Rodgers; Asya Stepansky; Jennifer Troge; Peter Andrews; Mitchell Bekritsky; Kith Pradhan; Elena Ghiban; Melissa Kramer; Jennifer Parla; Ryan Demeter; Lucinda L Fulton; Robert S Fulton; Vincent J Magrini; Kenny Ye; Jennifer C Darnell; Robert B Darnell; Elaine R Mardis; Richard K Wilson; Michael C Schatz; W Richard McCombie; Michael Wigler
Journal:  Neuron       Date:  2012-04-26       Impact factor: 17.173

7.  Rare chromosomal deletions and duplications increase risk of schizophrenia.

Authors: 
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

8.  A twin study of autism in Denmark, Finland, Iceland, Norway and Sweden.

Authors:  S Steffenburg; C Gillberg; L Hellgren; L Andersson; I C Gillberg; G Jakobsson; M Bohman
Journal:  J Child Psychol Psychiatry       Date:  1989-05       Impact factor: 8.982

9.  Patterns and rates of exonic de novo mutations in autism spectrum disorders.

Authors:  Benjamin M Neale; Yan Kou; Li Liu; Avi Ma'ayan; Kaitlin E Samocha; Aniko Sabo; Chiao-Feng Lin; Christine Stevens; Li-San Wang; Vladimir Makarov; Paz Polak; Seungtai Yoon; Jared Maguire; Emily L Crawford; Nicholas G Campbell; Evan T Geller; Otto Valladares; Chad Schafer; Han Liu; Tuo Zhao; Guiqing Cai; Jayon Lihm; Ruth Dannenfelser; Omar Jabado; Zuleyma Peralta; Uma Nagaswamy; Donna Muzny; Jeffrey G Reid; Irene Newsham; Yuanqing Wu; Lora Lewis; Yi Han; Benjamin F Voight; Elaine Lim; Elizabeth Rossin; Andrew Kirby; Jason Flannick; Menachem Fromer; Khalid Shakir; Tim Fennell; Kiran Garimella; Eric Banks; Ryan Poplin; Stacey Gabriel; Mark DePristo; Jack R Wimbish; Braden E Boone; Shawn E Levy; Catalina Betancur; Shamil Sunyaev; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Bernie Devlin; Richard A Gibbs; Kathryn Roeder; Gerard D Schellenberg; James S Sutcliffe; Mark J Daly
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

10.  Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

Authors:  Brian J O'Roak; Laura Vives; Santhosh Girirajan; Emre Karakoc; Niklas Krumm; Bradley P Coe; Roie Levy; Arthur Ko; Choli Lee; Joshua D Smith; Emily H Turner; Ian B Stanaway; Benjamin Vernot; Maika Malig; Carl Baker; Beau Reilly; Joshua M Akey; Elhanan Borenstein; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Jay Shendure; Evan E Eichler
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

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  217 in total

Review 1.  Genetic studies in intellectual disability and related disorders.

Authors:  Lisenka E L M Vissers; Christian Gilissen; Joris A Veltman
Journal:  Nat Rev Genet       Date:  2015-10-27       Impact factor: 53.242

Review 2.  From the genetic architecture to synaptic plasticity in autism spectrum disorder.

Authors:  Thomas Bourgeron
Journal:  Nat Rev Neurosci       Date:  2015-09       Impact factor: 34.870

3.  Learning impairments and molecular changes in the brain caused by β-catenin loss.

Authors:  Robert J Wickham; Jonathan M Alexander; Lillian W Eden; Mabel Valencia-Yang; Josué Llamas; John R Aubrey; Michele H Jacob
Journal:  Hum Mol Genet       Date:  2019-09-01       Impact factor: 6.150

4.  Co-occurring medical conditions among individuals with ASD-associated disruptive mutations.

Authors:  Evangeline C Kurtz-Nelson; Jennifer S Beighley; Caitlin M Hudac; Jennifer Gerdts; Arianne S Wallace; Kendra Hoekzema; Evan E Eichler; Raphael A Bernier
Journal:  Child Health Care       Date:  2020-03-17

5.  A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.

Authors:  Yuwen Liu; Yanyu Liang; A Ercument Cicek; Zhongshan Li; Jinchen Li; Rebecca A Muhle; Martina Krenzer; Yue Mei; Yan Wang; Nicholas Knoblauch; Jean Morrison; Siming Zhao; Yi Jiang; Evan Geller; Iuliana Ionita-Laza; Jinyu Wu; Kun Xia; James P Noonan; Zhong Sheng Sun; Xin He
Journal:  Am J Hum Genet       Date:  2018-05-10       Impact factor: 11.025

6.  Implication of LRRC4C and DPP6 in neurodevelopmental disorders.

Authors:  Gilles Maussion; Cristiana Cruceanu; Jill A Rosenfeld; Scott C Bell; Fabrice Jollant; Jin Szatkiewicz; Ryan L Collins; Carrie Hanscom; Ilaria Kolobova; Nicolas Menjot de Champfleur; Ian Blumenthal; Colby Chiang; Vanessa Ota; Christina Hultman; Colm O'Dushlaine; Steve McCarroll; Martin Alda; Sebastien Jacquemont; Zehra Ordulu; Christian R Marshall; Melissa T Carter; Lisa G Shaffer; Pamela Sklar; Santhosh Girirajan; Cynthia C Morton; James F Gusella; Gustavo Turecki; Dimitri J Stavropoulos; Patrick F Sullivan; Stephen W Scherer; Michael E Talkowski; Carl Ernst
Journal:  Am J Med Genet A       Date:  2016-10-19       Impact factor: 2.802

7.  Replication of a rare risk haplotype on 1p36.33 for autism spectrum disorder.

Authors:  N H Chapman; R A Bernier; S J Webb; J Munson; E M Blue; D-H Chen; E Heigham; W H Raskind; Ellen M Wijsman
Journal:  Hum Genet       Date:  2018-10-01       Impact factor: 4.132

8.  Loss of the neurodevelopmental gene Zswim6 alters striatal morphology and motor regulation.

Authors:  David J Tischfield; Dave K Saraswat; Andrew Furash; Stephen C Fowler; Marc V Fuccillo; Stewart A Anderson
Journal:  Neurobiol Dis       Date:  2017-04-19       Impact factor: 5.996

9.  Neurobeachin is required postsynaptically for electrical and chemical synapse formation.

Authors:  Adam C Miller; Lisa H Voelker; Arish N Shah; Cecilia B Moens
Journal:  Curr Biol       Date:  2014-12-04       Impact factor: 10.834

10.  Adenomatous polyposis coli protein deletion leads to cognitive and autism-like disabilities.

Authors:  J L Mohn; J Alexander; A Pirone; C D Palka; S-Y Lee; L Mebane; P G Haydon; M H Jacob
Journal:  Mol Psychiatry       Date:  2014-06-17       Impact factor: 15.992

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