| Literature DB >> 24385860 |
Cibelle Engels1, Renata Fuganti-Pagliarini2, Silvana Regina Rockenbach Marin2, Francismar Corrêa Marcelino-Guimarães2, Maria Cristina Neves Oliveira2, Norihito Kanamori3, Junya Mizoi4, Kazuo Nakashima3, Kazuko Yamaguchi-Shinozaki5, Alexandre Lima Nepomuceno2.
Abstract
The loss of soybean yield to Brazilian producers because of a water deficit in the 2011-2012 season was 12.9%. To reduce such losses, molecular biology techniques, including plant transformation, can be used to insert genes of interest into conventional soybean cultivars to produce lines that are more tolerant to drought. The abscisic acid (ABA)-independent Dehydration Responsive Element Binding (DREB) gene family has been used to obtain plants with increased tolerance to abiotic stresses. In the present study, the rd29A:AtDREB2A CA gene from Arabidopsis thaliana was inserted into soybean using biolistics. Seventy-eight genetically modified (GM) soybean lines containing 2-17 copies of the AtDREB2A CA gene were produced. Two GM soybean lines (P1397 and P2193) were analyzed to assess the differential expression of the AtDREB2A CA transgene in leaves and roots submitted to various dehydration treatments. Both GM lines exhibited high expression of the transgene, with the roots of P2193 showing the highest expression levels during water deficit. Physiological parameters examined during water deficit confirmed the induction of stress. This analysis of AtDREB2A CA expression in GM soybean indicated that line P2193 had the greatest stability and highest expression in roots during water deficit-induced stress.Entities:
Keywords: Arabidopsis; differential expression; genetically modified organism; water deficit
Year: 2013 PMID: 24385860 PMCID: PMC3873188 DOI: 10.1590/S1415-47572013000400015
Source DB: PubMed Journal: Genet Mol Biol ISSN: 1415-4757 Impact factor: 1.771
Figure 1Plasmid containing the transgene rd29A:AtDREB2A CA and the map of restriction enzymes used in this work. The enzymes used in Southern blotting were HindIII and EcoRV.
Figure 2Phylogenetic tree generated from the DREB-coding DNA sequence (CDS) from various plant species. The sequences were obtained from the NCBI website and were aligned and clustered using Clustal X and MEGA 4.0, respectively.
Figure 3Phylogenetic tree generated from CDS sequences of the soybean DREB gene. The sequences were obtained from the NCBI website and were aligned and clustered using Clustal X and MEGA 4.0, respectively.
Estimation of AtDREB2A copy number in generations T0 and T1 using qPCR and the 2−ΔCt/2 method. The first column displays the selected events, the second and third columns display the results from the independent experiments, the fourth column lists the average of the two experiments, and the fifth, sixth and ninth columns show the standard deviation (SD), coefficient of variation (CV%) and estimated copy number, respectively.
| Sample | First experiment | Second experiment | Average 2−ΔCt | SD 2−ΔCt | CV% 2−ΔCt | SD+ | SD- | Nº of copies |
|---|---|---|---|---|---|---|---|---|
| P 1397 | 15.95 | 10.35 | 13.15 | 3.96 | 30.15 | 17.11 | 9.18 | 9 to 17 |
| P 7186 | 8.39 | 5.73 | 7.06 | 1.88 | 26.60 | 8.94 | 5.18 | 5 to 9 |
| P 7413 | 4.95 | 3.98 | 4.47 | 0.69 | 15.45 | 5.16 | 3.78 | 4 to 5 |
| P 2193 | 966.38 | 225.89 | 596.14 | 523.61 | 87.83 | 1119.74 | 72.53 | High |
| P 7195 | 9.36 | 6.74 | 8.05 | 1.85 | 23.00 | 9.91 | 6.20 | 6 to 10 |
| P 7417 | 4.05 | 2.92 | 3.49 | 0.80 | 22.95 | 4.29 | 2.69 | 3 to 4 |
| P 7212 | 6.84 | 5.09 | 5.97 | 1.24 | 20.75 | 7.21 | 4.73 | 5 to 7 |
| P 7418 | 7.9 | 5.66 | 6.78 | 1.58 | 23.44 | 8.37 | 5.19 | 5 to 8 |
| P 7231 | 6.23 | 4.25 | 5.24 | 1.40 | 26.72 | 6.64 | 3.84 | 4 to 7 |
| P 7430 | 4.33 | 3.2 | 3.77 | 0.80 | 21.13 | 4.56 | 2.97 | 3 to 5 |
| P 7256 | 9.44 | 4.88 | 7.16 | 3.22 | 45.12 | 10.39 | 3.93 | 4 to 10 |
| P 7374 | 3 12 | 2.32 | 2.72 | 0.57 | 20.86 | 3.29 | 2.15 | 2 to 4 |
| P 7431 | 14 | 8.56 | 11.28 | 3.84 | 34.07 | 15.12 | 7.44 | 7 to 15 |
| P 7174 | 6.17 | 3.88 | 5.03 | 1.62 | 32.26 | 6.65 | 3.41 | 3 to 7 |
| P 7393 | 4.61 | 3.15 | 3.88 | 1.03 | 26.62 | 4.91 | 2.85 | 3 to 5 |
| P 7531 | 9.23 | 5.91 | 7.57 | 2.34 | 30.94 | 9.91 | 5.23 | 5 to 10 |
| P 1397.1 (T1) | 0.07 | 0.05 | 0.06 | 0.01 | 20.41 | 0.07 | 0.05 | Negative |
| P 1397.2 (T1) | 2.94 | 1.7 | 2.32 | 0.88 | 37.85 | 3.20 | 1.44 | 1 to 3 |
| P 2193.1 (T1) | 0.76 | 0.53 | 0.65 | 0.16 | 25.29 | 0.81 | 0.48 | Negative |
| P 2193.2 (T1) | 4.14 | 2.12 | 3.13 | 1.43 | 45.68 | 4.56 | 1.70 | 2 to 5 |
Samples identified with T1 descended from the T0 generation (i.e., generation T1). The copy number in generation T1 was divided by two because these plants were hemizygous. The number followed by a dot in T1 plants indicates the two descendants analyzed of each planta (P 1397 and P 2193), here denominated dot 1 and dot 2.
High fluorescence values caused signal saturation that led to imprecise results; in this case, the plants were considered to have > 50 copies.
Samples with values < 1 were considered to be negative.
Relative expression of the AtDREB2A transgene in GM plants P1397 and P2193 in response to dehydration.
| Dehydration experiment | GM plant | Treatment (min) | Expression | Expression profile | SE | p |
|---|---|---|---|---|---|---|
| T0 Generation | P1397 | 0 | 1.99 | - | ±2.3 | 0.559 |
| 30 | 89.2 | - | ±138.1 | 0.110 | ||
| 90 | 5.1 | - | ±9.8 | 0.241 | ||
| P 2193 | 0 | 725 | - | ±1744.8 | 0.144 | |
| 30 | 535.2 | Up | ±1308.7 | 0.004 | ||
| 90 | 146.1 | Up | ±203.0 | 0.003 | ||
|
| ||||||
| T1 Generation | P 1397 | 0 | 11.3 | Up | ±12.9 | 0.072 |
| 30 | 0.9 | - | ±1.1 | 0.965 | ||
| 90 | 0.001 | Down | ±0.002 | 0.022 | ||
| P 2193 | 0 | 111.1 | Up | ±247.1 | 0.081 | |
| 30 | 0.28 | - | ±0.31 | 0.545 | ||
| 90 | 8.3 | - | ±10.5 | 0.141 | ||
The standard error (SE) was calculated for median values, with p < 0.1.
The values for up-regulated (UP) profiles were significantly different from the control group when the expression profile during water stress diverged from the control at 10% probability (p < 0.1) upon randomization testing (n = 2,000 iterations). All statistical analyses were done using RESTmsc software.
Figure 4Southern blot for generations T0, T1 and T2 of genetically modified P2193 containing the transcription factor AtDREB2A. Lanes 1–8 represent T1 generation plants. BR16 - control (normal) soybean cultivar.
Relative gene expression of the AtDREB2A transgene in the leaves and roots of T2 generation, GM plants P2193, grown under hydroponic conditions.
| Organ | Treatment (min) | Expression | Expression profile | SE | p |
|---|---|---|---|---|---|
| Leaves | 0 | 121.7 | Up | ± 114.5 | 0.001 |
| 30 | 907.5 | Up | ± 146.8 | 0.001 | |
| 60 | 1042.0 | Up | ± 145.2 | 0.001 | |
| 90 | 508.8 | Up | ± 497.9 | 0.001 | |
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| |||||
| Roots | 0 | 901.3 | Up | ± 111.4 | 0.001 |
| 30 | 857.8 | Up | ± 120.0 | 0.001 | |
| 60 | 27749.7 | Up | ± 137.8 | 0.001 | |
| 90 | 1363.2 | Up | ± 182.8 | 0.001 | |
The data were analyzed using RESTmsc software, which performs random comparisons of each treatment with its corresponding control. The standard error (SE) was calculated for median values, with p < 0.1.
The values for up-regulated (Up) profiles were significantly different from the control group when the expression profile during water stress diverged from the control at 10% probability (p < 0.1) upon randomization testing (n = 2,000 iterations).
Figure 5Relative gene expression of the AtDREB2A CA transgene in leaves and roots of the T2 generation of P2193 during stress induced by a water deficit. Transgene expression was normalized to the reference genes GmrRNA18S and Gmβ_actin and then calibrated with the corresponding time points and tissue from control plants (cultivar BR 16) (p < 0.001). Statistical analyses were done using RESTmsc software and all treatments of leaves and roots were significantly higher than the control.
Figure 6Physiological responses in control plants (cultivar BR 16) and transgenic P2193 plants during stress for 30, 60 and 90 min. (A) Photosynthetic rate, (B) Stomatal conductance, (C) Transpiration rate and (D) Air-leaf temperature. The points are the mean ± SE of three determinations. The non-overlapping points at 30 min were significantly different from each other (p ≤ 0.05, Duncan’s test).