Literature DB >> 24376912

Circular Permutation of the Trp-cage: Fold Rescue upon Addition of a Hydrophobic Staple.

Aimee Byrne1, Brandon L Kier1, D V Williams1, Michele Scian1, Niels H Andersen1.   

Abstract

The Trp-cage, at 20 residues in length, is generally acknowledged as the smallest fully n class="Chemical">protein-like folding motif. Linking the termini by a two-residue unit and excising one residue affords circularly permuted sequences that adopt the same structure. This represents the first successful circular permutation of any fold of less than 50-residue length. As was observed for the original topology, a hydrophobic staple near the chain termini is required for enhanced fold stability.

Entities:  

Year:  2013        PMID: 24376912      PMCID: PMC3870897          DOI: 10.1039/C3RA43674H

Source DB:  PubMed          Journal:  RSC Adv        ISSN: 2046-2069            Impact factor:   3.361


  41 in total

1.  Trp-cage: folding free energy landscape in explicit water.

Authors:  Ruhong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-27       Impact factor: 11.205

2.  Enhanced hairpin stability through loop design: the case of the protein G B1 domain hairpin.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

3.  The equilibrium properties and folding kinetics of an all-atom Go model of the Trp-cage.

Authors:  Apichart Linhananta; Jesse Boer; Ian MacKay
Journal:  J Chem Phys       Date:  2005-03-15       Impact factor: 3.488

4.  Rate constant and reaction coordinate of Trp-cage folding in explicit water.

Authors:  Jarek Juraszek; Peter G Bolhuis
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

5.  Computing the stability diagram of the Trp-cage miniprotein.

Authors:  Dietmar Paschek; Sascha Hempel; Angel E García
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

6.  Optimal salt bridge for Trp-cage stabilization.

Authors:  D Victoria Williams; Aimee Byrne; James Stewart; Niels H Andersen
Journal:  Biochemistry       Date:  2011-02-01       Impact factor: 3.162

7.  Computational design of thermostabilizing D-amino acid substitutions.

Authors:  Agustina Rodriguez-Granillo; Srinivas Annavarapu; Lei Zhang; Ronald L Koder; Vikas Nanda
Journal:  J Am Chem Soc       Date:  2011-10-27       Impact factor: 15.419

8.  Amino acids with hydrogen-bonding side chains have an intrinsic tendency to sample various turn conformations in aqueous solution.

Authors:  Andrew Hagarman; Daniel Mathieu; Siobhan Toal; Thomas J Measey; Harald Schwalbe; Reinhard Schweitzer-Stenner
Journal:  Chemistry       Date:  2011-05-05       Impact factor: 5.236

9.  Loss of dispersion energy changes the stability and folding/unfolding equilibrium of the Trp-cage protein.

Authors:  Jirí Cerný; Jirí Vondrásek; Pavel Hobza
Journal:  J Phys Chem B       Date:  2009-04-23       Impact factor: 2.991

10.  Solvent interactions with the Trp-cage peptide in 35% ethanol-water.

Authors:  Robert C Neuman; John T Gerig
Journal:  Biopolymers       Date:  2008-10       Impact factor: 2.505

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  4 in total

1.  Tightening up the structure, lighting up the pathway: Application of molecular constraints and light to manipulate protein folding, self-assembly and function.

Authors:  Beatrice N Markiewicz; Robert M Culik; Feng Gai
Journal:  Sci China Chem       Date:  2014-12       Impact factor: 9.445

2.  Computational Modeling of the Thermodynamics of the Mesophilic and Thermophilic Mutants of Trp-Cage Miniprotein.

Authors:  Leonardo Bò; Edoardo Milanetti; Cheng Giuseppe Chen; Giancarlo Ruocco; Andrea Amadei; Marco D'Abramo
Journal:  ACS Omega       Date:  2022-04-12

3.  Tuning the Attempt Frequency of Protein Folding Dynamics via Transition-State Rigidification: Application to Trp-Cage.

Authors:  Rachel M Abaskharon; Robert M Culik; G Andrew Woolley; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-02-05       Impact factor: 6.475

4.  Folding dynamics and pathways of the trp-cage miniproteins.

Authors:  Aimee Byrne; D Victoria Williams; Bipasha Barua; Stephen J Hagen; Brandon L Kier; Niels H Andersen
Journal:  Biochemistry       Date:  2014-09-16       Impact factor: 3.162

  4 in total

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