Literature DB >> 24376905

On Permutation Procedures for Strong Control in Multiple Testing with Gene Expression Data.

Grzegorz A Rempala1, Yuhong Yang2.   

Abstract

We consider two popular, permutation-based, step-down procedures of p-values adjustment in multiple testing problems known as min P and max T and intended for strong control of the family-wise error rate, under the so-called subset pivotality property (SPP). We examine key but subtle issues involved in ascertaining validity of these methods, and also introduce a new, slightly narrower notion of strong control which ensures proper bounds on the family-wise error rate in min P and max T without SPP.

Entities:  

Keywords:  multiple testing; permutation test; step down p-value adjustment methods; strong control of family-wise error rate; subset pivotality property

Year:  2013        PMID： 24376905      PMCID： PMC3873102          DOI： 10.4310/SII.2013.v6.n1.a8

Source DB:  PubMed          Journal:  Stat Interface        ISSN： 1938-7989            Impact factor:   0.582


  2 in total

1.  Multiple testing with minimal assumptions.

Authors:  Peter H Westfall; James F Troendle
Journal:  Biom J       Date:  2008-10       Impact factor: 2.207

2.  Multiple testing and its applications to microarrays.

Authors:  Yongchao Ge; Stuart C Sealfon; Terence P Speed
Journal:  Stat Methods Med Res       Date:  2009-12       Impact factor: 3.021
  2 in total
  4 in total

1.  Traffic-derived particulate matter exposure and histone H3 modification: A repeated measures study.

Authors:  Yinan Zheng; Marco Sanchez-Guerra; Zhou Zhang; Brian T Joyce; Jia Zhong; Jacob K Kresovich; Lei Liu; Wei Zhang; Tao Gao; Dou Chang; Citlalli Osorio-Yanez; Juan Jose Carmona; Sheng Wang; John P McCracken; Xiao Zhang; Yana Chervona; Anaite Díaz; Pier A Bertazzi; Petros Koutrakis; Choong-Min Kang; Joel Schwartz; Andrea A Baccarelli; Lifang Hou
Journal:  Environ Res       Date:  2016-12-03       Impact factor: 6.498

2.  Prospective analysis of circulating metabolites and breast cancer in EPIC.

Authors:  Mathilde His; Vivian Viallon; Laure Dossus; Audrey Gicquiau; David Achaintre; Augustin Scalbert; Pietro Ferrari; Isabelle Romieu; N Charlotte Onland-Moret; Elisabete Weiderpass; Christina C Dahm; Kim Overvad; Anja Olsen; Anne Tjønneland; Agnès Fournier; Joseph A Rothwell; Gianluca Severi; Tilman Kühn; Renée T Fortner; Heiner Boeing; Antonia Trichopoulou; Anna Karakatsani; Georgia Martimianaki; Giovanna Masala; Sabina Sieri; Rosario Tumino; Paolo Vineis; Salvatore Panico; Carla H van Gils; Therese H Nøst; Torkjel M Sandanger; Guri Skeie; J Ramón Quirós; Antonio Agudo; Maria-Jose Sánchez; Pilar Amiano; José María Huerta; Eva Ardanaz; Julie A Schmidt; Ruth C Travis; Elio Riboli; Konstantinos K Tsilidis; Sofia Christakoudi; Marc J Gunter; Sabina Rinaldi
Journal:  BMC Med       Date:  2019-09-24       Impact factor: 8.775

3.  Sex-Specific Differences in the Gut Microbiome in Response to Dietary Fiber Supplementation in IL-10-Deficient Mice.

Authors:  Zhengxiao Zhang; Jae Eun Hyun; Aducio Thiesen; Heekuk Park; Naomi Hotte; Hikaru Watanabe; Takanobu Higashiyama; Karen L Madsen
Journal:  Nutrients       Date:  2020-07-15       Impact factor: 5.717

4.  Prospective analysis of circulating metabolites and endometrial cancer risk.

Authors:  Laure Dossus; Eirini Kouloura; Carine Biessy; Vivian Viallon; Alexandros P Siskos; Niki Dimou; Sabina Rinaldi; Melissa A Merritt; Naomi Allen; Renee Fortner; Rudolf Kaaks; Elisabete Weiderpass; Inger T Gram; Joseph A Rothwell; Lucie Lécuyer; Gianluca Severi; Matthias B Schulze; Therese Haugdahl Nøst; Marta Crous-Bou; Maria-Jose Sánchez; Pilar Amiano; Sandra M Colorado-Yohar; Aurelio Barricarte Gurrea; Julie A Schmidt; Domenico Palli; Claudia Agnoli; Rosario Tumino; Carlotta Sacerdote; Amalia Mattiello; Roel Vermeulen; Alicia K Heath; Sofia Christakoudi; Konstantinos K Tsilidis; Ruth C Travis; Marc J Gunter; Hector C Keun
Journal:  Gynecol Oncol       Date:  2021-06-05       Impact factor: 5.482
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.