Literature DB >> 24375939

Translational reprogramming in cellular stress response.

Botao Liu1, Shu-Bing Qian.   

Abstract

Cell survival in changing environments requires appropriate regulation of gene expression, including translational control. Multiple stress signaling pathways converge on several key translation factors, such as eIF4F and eIF2, and rapidly modulate messenger RNA (mRNA) translation at both the initiation and the elongation stages. Repression of global protein synthesis is often accompanied with selective translation of mRNAs encoding proteins that are vital for cell survival and stress recovery. The past decade has seen significant progress in our understanding of translational reprogramming in part due to the development of technologies that allow the dissection of the interplay between mRNA elements and corresponding binding proteins. Recent genome-wide studies using ribosome profiling have revealed unprecedented proteome complexity and flexibility through alternative translation, raising intriguing questions about stress-induced translational reprogramming. Many surprises emerged from these studies, including wide-spread alternative translation initiation, ribosome pausing during elongation, and reversible modification of mRNAs. Elucidation of the regulatory mechanisms underlying translational reprogramming will ultimately lead to the development of novel therapeutic strategies for human diseases.
© 2013 John Wiley & Sons, Ltd.

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Year:  2013        PMID: 24375939      PMCID: PMC3991730          DOI: 10.1002/wrna.1212

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  140 in total

Review 1.  A mechanistic overview of translation initiation in eukaryotes.

Authors:  Colin Echeverría Aitken; Jon R Lorsch
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 2.  Specialized ribosomes: a new frontier in gene regulation and organismal biology.

Authors:  Shifeng Xue; Maria Barna
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-23       Impact factor: 94.444

Review 3.  Translational control of eIF5A in various diseases.

Authors:  Annette Kaiser
Journal:  Amino Acids       Date:  2011-08-05       Impact factor: 3.520

4.  Cellular dynamics of RNA modification.

Authors:  Chengqi Yi; Tao Pan
Journal:  Acc Chem Res       Date:  2011-05-26       Impact factor: 22.384

5.  CPEB2-eEF2 interaction impedes HIF-1α RNA translation.

Authors:  Po-Jen Chen; Yi-Shuian Huang
Journal:  EMBO J       Date:  2011-12-09       Impact factor: 11.598

6.  High-resolution view of the yeast meiotic program revealed by ribosome profiling.

Authors:  Gloria A Brar; Moran Yassour; Nir Friedman; Aviv Regev; Nicholas T Ingolia; Jonathan S Weissman
Journal:  Science       Date:  2011-12-22       Impact factor: 47.728

7.  Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Authors:  Nicholas T Ingolia; Liana F Lareau; Jonathan S Weissman
Journal:  Cell       Date:  2011-11-03       Impact factor: 41.582

8.  A unifying model for mTORC1-mediated regulation of mRNA translation.

Authors:  Carson C Thoreen; Lynne Chantranupong; Heather R Keys; Tim Wang; Nathanael S Gray; David M Sabatini
Journal:  Nature       Date:  2012-05-02       Impact factor: 49.962

9.  The translational landscape of mTOR signalling steers cancer initiation and metastasis.

Authors:  Andrew C Hsieh; Yi Liu; Merritt P Edlind; Nicholas T Ingolia; Matthew R Janes; Annie Sher; Evan Y Shi; Craig R Stumpf; Carly Christensen; Michael J Bonham; Shunyou Wang; Pingda Ren; Michael Martin; Katti Jessen; Morris E Feldman; Jonathan S Weissman; Kevan M Shokat; Christian Rommel; Davide Ruggero
Journal:  Nature       Date:  2012-02-22       Impact factor: 69.504

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962

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  86 in total

Review 1.  uORF-mediated translational control: recently elucidated mechanisms and implications in cancer.

Authors:  Hung-Hsi Chen; Woan-Yuh Tarn
Journal:  RNA Biol       Date:  2019-06-24       Impact factor: 4.652

2.  uORF-seqr: A Machine Learning-Based Approach to the Identification of Upstream Open Reading Frames in Yeast.

Authors:  Pieter Spealman; Armaghan Naik; Joel McManus
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Going against the Tide: Selective Cellular Protein Synthesis during Virally Induced Host Shutoff.

Authors:  Shuai Cao; Pragyesh Dhungel; Zhilong Yang
Journal:  J Virol       Date:  2017-08-10       Impact factor: 5.103

4.  Global expression profiling and pathway analysis in two different population groups in relation to high altitude.

Authors:  Supriya Saini; Praveen Vats; Susovon Bayen; Priya Gaur; Koushik Ray; Krishna Kishore; Meerim Sartmyrzaeva; Almaz Akunov; Abdirashit Maripov; Akpay Sarybaev; Bhuvnesh Kumar; Shashi Bala Singh
Journal:  Funct Integr Genomics       Date:  2018-10-19       Impact factor: 3.410

5.  Translation from unconventional 5' start sites drives tumour initiation.

Authors:  Ataman Sendoel; Joshua G Dunn; Edwin H Rodriguez; Shruti Naik; Nicholas C Gomez; Brian Hurwitz; John Levorse; Brian D Dill; Daniel Schramek; Henrik Molina; Jonathan S Weissman; Elaine Fuchs
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

6.  N6-Methyladenosine Guides mRNA Alternative Translation during Integrated Stress Response.

Authors:  Jun Zhou; Ji Wan; Xin Erica Shu; Yuanhui Mao; Xiao-Min Liu; Xin Yuan; Xingqian Zhang; Martin E Hess; Jens C Brüning; Shu-Bing Qian
Journal:  Mol Cell       Date:  2018-02-08       Impact factor: 17.970

7.  Characterizing inactive ribosomes in translational profiling.

Authors:  Botao Liu; Shu-Bing Qian
Journal:  Translation (Austin)       Date:  2016-01-08

8.  RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.

Authors:  Keren Li; C Matthew Hope; Xiaozhong A Wang; Ji-Ping Wang
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

9.  Post-Transcriptional Coordination of the Arabidopsis Iron Deficiency Response is Partially Dependent on the E3 Ligases RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2).

Authors:  I-Chun Pan; Huei-Hsuan Tsai; Ya-Tan Cheng; Tuan-Nan Wen; Thomas J Buckhout; Wolfgang Schmidt
Journal:  Mol Cell Proteomics       Date:  2015-08-07       Impact factor: 5.911

10.  mTOR Inhibition Mitigates Enhanced mRNA Translation Associated with the Metastatic Phenotype of Osteosarcoma Cells In Vivo.

Authors:  James J Morrow; Arnulfo Mendoza; Allyson Koyen; Michael M Lizardo; Ling Ren; Timothy J Waybright; Ryan J Hansen; Daniel L Gustafson; Ming Zhou; Timothy M Fan; Peter C Scacheri; Chand Khanna
Journal:  Clin Cancer Res       Date:  2016-06-24       Impact factor: 12.531

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