Literature DB >> 24373845

Wheels within wheels: the plant circadian system.

Polly Yingshan Hsu1, Stacey L Harmer2.   

Abstract

Circadian clocks integrate environmental signals with internal cues to coordinate diverse physiological outputs so that they occur at the most appropriate season or time of day. Recent studies using systems approaches, primarily in Arabidopsis, have expanded our understanding of the molecular regulation of the central circadian oscillator and its connections to input and output pathways. Similar approaches have also begun to reveal the importance of the clock for key agricultural traits in crop species. In this review, we discuss recent developments in the field, including a new understanding of the molecular architecture underlying the plant clock; mechanistic links between clock components and input and output pathways; and our growing understanding of the importance of clock genes for agronomically important traits.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Arabidopsis; agricultural traits; circadian clock; input; output; systems biology

Mesh:

Substances:

Year:  2013        PMID: 24373845      PMCID: PMC3976767          DOI: 10.1016/j.tplants.2013.11.007

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  115 in total

Review 1.  From a repressilator-based circadian clock mechanism to an external coincidence model responsible for photoperiod and temperature control of plant architecture in Arabodopsis thaliana.

Authors:  Takafumi Yamashino
Journal:  Biosci Biotechnol Biochem       Date:  2013-01-07       Impact factor: 2.043

2.  Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis.

Authors:  Wei Hu; Keara A Franklin; Robert A Sharrock; Matthew A Jones; Stacey L Harmer; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-09       Impact factor: 11.205

3.  Circadian control of chloroplast transcription by a nuclear-encoded timing signal.

Authors:  Zeenat B Noordally; Kenyu Ishii; Kelly A Atkins; Sarah J Wetherill; Jelena Kusakina; Eleanor J Walton; Maiko Kato; Miyuki Azuma; Kan Tanaka; Mitsumasa Hanaoka; Antony N Dodd
Journal:  Science       Date:  2013-03-15       Impact factor: 47.728

4.  Reciprocal interaction of the circadian clock with the iron homeostasis network in Arabidopsis.

Authors:  Sunghyun Hong; Sun A Kim; Mary Lou Guerinot; C Robertson McClung
Journal:  Plant Physiol       Date:  2012-12-18       Impact factor: 8.340

5.  ELF4 regulates GIGANTEA chromatin access through subnuclear sequestration.

Authors:  Yumi Kim; Junhyun Lim; Miji Yeom; Hyunmin Kim; Jeongsik Kim; Lei Wang; Woe Yeon Kim; David E Somers; Hong Gil Nam
Journal:  Cell Rep       Date:  2013-03-21       Impact factor: 9.423

6.  OsELF3 is involved in circadian clock regulation for promoting flowering under long-day conditions in rice.

Authors:  Ying Yang; Qiang Peng; Guo-Xing Chen; Xiang-Hua Li; Chang-Yin Wu
Journal:  Mol Plant       Date:  2012-08-10       Impact factor: 13.164

7.  Iron is involved in the maintenance of circadian period length in Arabidopsis.

Authors:  Yong-Yi Chen; Ying Wang; Lung-Jiun Shin; Jing-Fen Wu; Varanavasiappan Shanmugam; Munkhtsetseg Tsednee; Jing-Chi Lo; Chyi-Chuann Chen; Shu-Hsing Wu; Kuo-Chen Yeh
Journal:  Plant Physiol       Date:  2013-01-10       Impact factor: 8.340

8.  Accurate timekeeping is controlled by a cycling activator in Arabidopsis.

Authors:  Polly Yingshan Hsu; Upendra K Devisetty; Stacey L Harmer
Journal:  Elife       Date:  2013-04-30       Impact factor: 8.140

9.  Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.

Authors:  Peter D Gould; Nicolas Ugarte; Mirela Domijan; Maria Costa; Julia Foreman; Dana Macgregor; Ken Rose; Jayne Griffiths; Andrew J Millar; Bärbel Finkenstädt; Steven Penfield; David A Rand; Karen J Halliday; Anthony J W Hall
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

10.  Circadian clock adjustment to plant iron status depends on chloroplast and phytochrome function.

Authors:  Patrice A Salomé; Michele Oliva; Detlef Weigel; Ute Krämer
Journal:  EMBO J       Date:  2012-12-14       Impact factor: 11.598

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  129 in total

Review 1.  Integrating circadian dynamics with physiological processes in plants.

Authors:  Kathleen Greenham; C Robertson McClung
Journal:  Nat Rev Genet       Date:  2015-09-15       Impact factor: 53.242

2.  A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis.

Authors:  Tiffany L Liu; Linsey Newton; Ming-Jung Liu; Shin-Han Shiu; Eva M Farré
Journal:  Plant Physiol       Date:  2015-11-19       Impact factor: 8.340

Review 3.  Circadian mRNA expression: insights from modeling and transcriptomics.

Authors:  Sarah Lück; Pål O Westermark
Journal:  Cell Mol Life Sci       Date:  2015-10-26       Impact factor: 9.261

4.  Phototropins do not alter accumulation of evening-phased circadian transcripts under blue light.

Authors:  Suzanne Litthauer; Martin W Battle; Matthew A Jones
Journal:  Plant Signal Behav       Date:  2016

5.  CIRCADIAN CLOCK ASSOCIATED1 (CCA1) and the Circadian Control of Stomatal Aperture.

Authors:  Miriam Hassidim; Yuri Dakhiya; Adi Turjeman; Duaa Hussien; Ekaterina Shor; Ariane Anidjar; Keren Goldberg; Rachel M Green
Journal:  Plant Physiol       Date:  2017-10-30       Impact factor: 8.340

6.  Circadian Stress Regimes Affect the Circadian Clock and Cause Jasmonic Acid-Dependent Cell Death in Cytokinin-Deficient Arabidopsis Plants.

Authors:  Silvia Nitschke; Anne Cortleven; Tim Iven; Ivo Feussner; Michel Havaux; Michael Riefler; Thomas Schmülling
Journal:  Plant Cell       Date:  2016-06-27       Impact factor: 11.277

Review 7.  Dancing in the dark: darkness as a signal in plants.

Authors:  Adam Seluzicki; Yogev Burko; Joanne Chory
Journal:  Plant Cell Environ       Date:  2017-02-23       Impact factor: 7.228

8.  Correlations between Circadian Rhythms and Growth in Challenging Environments.

Authors:  Yuri Dakhiya; Duaa Hussien; Eyal Fridman; Moshe Kiflawi; Rachel Green
Journal:  Plant Physiol       Date:  2017-01-30       Impact factor: 8.340

9.  A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis.

Authors:  Zheng Li; Katia Bonaldi; Francisco Uribe; Jose L Pruneda-Paz
Journal:  Curr Biol       Date:  2018-02-01       Impact factor: 10.834

10.  The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.

Authors:  Carine M Marshall; Virginia Tartaglio; Maritza Duarte; Frank G Harmon
Journal:  Plant Cell       Date:  2016-09-13       Impact factor: 11.277

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