Literature DB >> 28044340

Dancing in the dark: darkness as a signal in plants.

Adam Seluzicki1, Yogev Burko1,2, Joanne Chory1,2.   

Abstract

Daily cycles of light and dark provide an organizing principle and temporal constraints under which life on Earth evolved. While light is often the focus of plant studies, it is only half the story. Plants continuously adjust to their surroundings, taking both dawn and dusk as cues to organize their growth, development and metabolism to appropriate times of day. In this review, we examine the effects of darkness on plant physiology and growth. We describe the similarities and differences between seedlings grown in the dark versus those grown in light-dark cycles, and the evolution of etiolated growth. We discuss the integration of the circadian clock into other processes, looking carefully at the points of contact between clock genes and growth-promoting gene-regulatory networks in temporal gating of growth. We also examine daily starch accumulation and degradation, and the possible contribution of dark-specific metabolic controls in regulating energy and growth. Examining these studies together reveals a complex and continuous balancing act, with many signals, dark included, contributing information and guiding the plant through its life cycle. The extraordinary interconnection between light and dark is manifest during cycles of day and night and during seedling emergence above versus below the soil surface.
© 2017 John Wiley & Sons Ltd.

Entities:  

Keywords:  Arabidopsis; PIF; circadian; dark; growth; light; photobody; phytochrome; sugar

Mesh:

Year:  2017        PMID: 28044340      PMCID: PMC6110299          DOI: 10.1111/pce.12900

Source DB:  PubMed          Journal:  Plant Cell Environ        ISSN: 0140-7791            Impact factor:   7.228


  165 in total

1.  Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis.

Authors:  M J Dowson-Day; A J Millar
Journal:  Plant J       Date:  1999-01       Impact factor: 6.417

2.  Inactivation of thioredoxin f1 leads to decreased light activation of ADP-glucose pyrophosphorylase and altered diurnal starch turnover in leaves of Arabidopsis plants.

Authors:  Ina Thormählen; Joachim Ruber; Edda von Roepenack-Lahaye; Sven-Matthias Ehrlich; Vincent Massot; Christine Hümmer; Justyna Tezycka; Emmanuelle Issakidis-Bourguet; Peter Geigenberger
Journal:  Plant Cell Environ       Date:  2012-06-26       Impact factor: 7.228

3.  Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation.

Authors:  Bassem Al-Sady; Weimin Ni; Stefan Kircher; Eberhard Schäfer; Peter H Quail
Journal:  Mol Cell       Date:  2006-08-04       Impact factor: 17.970

4.  Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

Authors:  Gang Li; Hamad Siddiqui; Yibo Teng; Rongcheng Lin; Xiang-yuan Wan; Jigang Li; On-Sun Lau; Xinhao Ouyang; Mingqiu Dai; Jianmin Wan; Paul F Devlin; Xing Wang Deng; Haiyang Wang
Journal:  Nat Cell Biol       Date:  2011-04-17       Impact factor: 28.824

5.  Light signaling controls nuclear architecture reorganization during seedling establishment.

Authors:  Clara Bourbousse; Imen Mestiri; Gerald Zabulon; Mickaël Bourge; Fabio Formiggini; Maria A Koini; Spencer C Brown; Paul Fransz; Chris Bowler; Fredy Barneche
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

6.  Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

Authors:  Jungeun Lee; Kun He; Viktor Stolc; Horim Lee; Pablo Figueroa; Ying Gao; Waraporn Tongprasit; Hongyu Zhao; Ilha Lee; Xing Wang Deng
Journal:  Plant Cell       Date:  2007-03-02       Impact factor: 11.277

Review 7.  Higher plants use LOV to perceive blue light.

Authors:  Emilie Demarsy; Christian Fankhauser
Journal:  Curr Opin Plant Biol       Date:  2008-10-17       Impact factor: 7.834

8.  Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis.

Authors:  Diana Bauer; András Viczián; Stefan Kircher; Tabea Nobis; Roland Nitschke; Tim Kunkel; Kishore C S Panigrahi; Eva Adám; Erzsébet Fejes; Eberhard Schäfer; Ferenc Nagy
Journal:  Plant Cell       Date:  2004-05-21       Impact factor: 11.277

9.  Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis.

Authors:  Dongqin Chen; Gang Xu; Weijiang Tang; Yanjun Jing; Qiang Ji; Zhangjun Fei; Rongcheng Lin
Journal:  Plant Cell       Date:  2013-05-03       Impact factor: 11.277

10.  Phytochrome and retrograde signalling pathways converge to antagonistically regulate a light-induced transcriptional network.

Authors:  Guiomar Martín; Pablo Leivar; Dolores Ludevid; James M Tepperman; Peter H Quail; Elena Monte
Journal:  Nat Commun       Date:  2016-05-06       Impact factor: 14.919

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  22 in total

1.  An additional role for chloroplast proteins-an amino acid reservoir for energy production during sugar starvation.

Authors:  Masanori Izumi; Hiroyuki Ishida
Journal:  Plant Signal Behav       Date:  2018-12-03

2.  PIF3 is a negative regulator of the CBF pathway and freezing tolerance in Arabidopsis.

Authors:  Bochen Jiang; Yiting Shi; Xiaoyan Zhang; Xiaoyun Xin; Lijuan Qi; Hongwei Guo; Jigang Li; Shuhua Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

3.  LOT regulates TGN biogenesis and Golgi structure in plants.

Authors:  Peng-Fei Jia; Yong Xue; Hong-Ju Li; Wei-Cai Yang
Journal:  Plant Signal Behav       Date:  2019-01-27

Review 4.  Seedling Establishment: A Dimmer Switch-Regulated Process between Dark and Light Signaling.

Authors:  Charlotte M M Gommers; Elena Monte
Journal:  Plant Physiol       Date:  2017-12-07       Impact factor: 8.340

Review 5.  A Hard Day's Night: Cyanobacteria in Diel Cycles.

Authors:  David G Welkie; Benjamin E Rubin; Spencer Diamond; Rachel D Hood; David F Savage; Susan S Golden
Journal:  Trends Microbiol       Date:  2018-12-05       Impact factor: 17.079

6.  Strategies to Study Dark Growth Deficient or Slower Mutants in Chlamydomonas reinhardtii.

Authors:  Huanling Yang; Fei Han; Yue Wang; Wenqiang Yang; Wenfeng Tu
Journal:  Methods Mol Biol       Date:  2021

Review 7.  Sugar metabolism as input signals and fuel for leaf senescence.

Authors:  Jeongsik Kim
Journal:  Genes Genomics       Date:  2019-03-16       Impact factor: 1.839

8.  Curvature thylakoid 1 proteins modulate prolamellar body morphology and promote organized thylakoid biogenesis in Arabidopsis thaliana.

Authors:  Omar Sandoval-Ibáñez; Anurag Sharma; Michał Bykowski; Guillem Borràs-Gas; James B Y H Behrendorff; Silas Mellor; Klaus Qvortrup; Julian C Verdonk; Ralph Bock; Łucja Kowalewska; Mathias Pribil
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-19       Impact factor: 11.205

9.  Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism.

Authors:  Yogev Burko; Adam Seluzicki; Mark Zander; Ullas V Pedmale; Joseph R Ecker; Joanne Chory
Journal:  Plant Cell       Date:  2020-02-21       Impact factor: 11.277

10.  Short photoperiod attenuates CO2 fertilization effect on shoot biomass in Arabidopsis thaliana.

Authors:  Namraj Dhami; Christopher Ian Cazzonelli
Journal:  Physiol Mol Biol Plants       Date:  2021-03-16
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