Literature DB >> 24373284

Hypomethylation of the IL17RC promoter in peripheral blood leukocytes is not a hallmark of age-related macular degeneration.

Verity F Oliver1, Maria Franchina2, Andrew E Jaffe3, Kari E Branham4, Mohammad Othman4, John R Heckenlively4, Anand Swaroop5, Betsy Campochiaro1, Brendan J Vote6, Jamie E Craig7, Richard Saffery8, David A Mackey2, Jiang Qian1, Donald J Zack9, Alex W Hewitt10, Shannath L Merbs11.   

Abstract

Age-related macular degeneration (AMD) is a leading cause of visual impairment worldwide. Aberrant DNA methylation within the promoter of IL17RC in peripheral blood mononuclear cells has recently been reported in AMD. To validate this association, we examined DNA methylation of the IL17RC promoter in peripheral blood. First, we used Illumina Human Methylation450 Bead Arrays, a widely accepted platform for measuring global DNA methylation. Second, methylation status at multiple sites within the IL17RC promoter was determined by bisulfite pyrosequencing in two cohorts. Third, a methylation-sensitive quantitative PCR-based assay was performed on a subset of samples. In contrast to previous findings, we did not find evidence of differential methylation between AMD cases and age-matched controls. We conclude that hypomethylation within the IL17RC gene promoter in peripheral blood is not suitable for use as a clinical biomarker of AMD. This study highlights the need for considerable replication of epigenetic association studies prior to clinical application.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24373284      PMCID: PMC3926096          DOI: 10.1016/j.celrep.2013.11.042

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  36 in total

1.  Smoking and age-related macular degeneration. The POLA Study. Pathologies Oculaires Liées à l'Age.

Authors:  C Delcourt; J L Diaz; A Ponton-Sanchez; L Papoz
Journal:  Arch Ophthalmol       Date:  1998-08

Review 2.  Is sunlight exposure a risk factor for age-related macular degeneration? A systematic review and meta-analysis.

Authors:  Guo-Yuan Sui; Guang-Cong Liu; Guang-Ying Liu; Yan-Yan Gao; Yan Deng; Wen-Ying Wang; Shu-Hui Tong; Lie Wang
Journal:  Br J Ophthalmol       Date:  2012-11-10       Impact factor: 4.638

3.  Impaired expression and promotor hypermethylation of O6-methylguanine-DNA methyltransferase in retinoblastoma tissues.

Authors:  Kwong Wai Choy; Chi Pui Pang; Ka Fai To; Christopher B O Yu; Joan S K Ng; Dennis S C Lam
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-05       Impact factor: 4.799

4.  Dietary intake of antioxidants and risk of age-related macular degeneration.

Authors:  Redmer van Leeuwen; Sharmila Boekhoorn; Johannes R Vingerling; Jacqueline C M Witteman; Caroline C W Klaver; Albert Hofman; Paulus T V M de Jong
Journal:  JAMA       Date:  2005-12-28       Impact factor: 56.272

5.  Genetic and functional dissection of HTRA1 and LOC387715 in age-related macular degeneration.

Authors:  Zhenglin Yang; Zongzhong Tong; Yuhong Chen; Jiexi Zeng; Fang Lu; Xufang Sun; Chao Zhao; Kevin Wang; Lisa Davey; Haoyu Chen; Nyall London; Daisuke Muramatsu; Francesca Salasar; Ruben Carmona; Daniel Kasuga; Xiaolei Wang; Matthew Bedell; Manjuxia Dixie; Peiquan Zhao; Ruifu Yang; Daniel Gibbs; Xiaoqi Liu; Yan Li; Cai Li; Yuanfeng Li; Betsy Campochiaro; Ryan Constantine; Donald J Zack; Peter Campochiaro; Yinbin Fu; Dean Y Li; Nicholas Katsanis; Kang Zhang
Journal:  PLoS Genet       Date:  2010-02-05       Impact factor: 5.917

6.  Dietary fatty acids and the 10-year incidence of age-related macular degeneration: the Blue Mountains Eye Study.

Authors:  Jennifer S L Tan; Jie Jin Wang; Victoria Flood; Paul Mitchell
Journal:  Arch Ophthalmol       Date:  2009-05

7.  Hypomethylation of the IL17RC promoter associates with age-related macular degeneration.

Authors:  Lai Wei; Baoying Liu; Jingsheng Tuo; Defen Shen; Ping Chen; Zhiyu Li; Xunxian Liu; Jia Ni; Pradeep Dagur; H Nida Sen; Shayma Jawad; Diamond Ling; Stanley Park; Sagarika Chakrabarty; Catherine Meyerle; Elvira Agron; Frederick L Ferris; Emily Y Chew; J Philip McCoy; Emily Blum; Peter J Francis; Michael L Klein; Robyn H Guymer; Paul N Baird; Chi-Chao Chan; Robert B Nussenblatt
Journal:  Cell Rep       Date:  2012-11-21       Impact factor: 9.423

8.  Toll-like receptor 3 and geographic atrophy in age-related macular degeneration.

Authors:  Zhenglin Yang; Charity Stratton; Peter J Francis; Mark E Kleinman; Perciliz L Tan; Daniel Gibbs; Zongzhong Tong; Haoyu Chen; Ryan Constantine; Xian Yang; Yuhong Chen; Jiexi Zeng; Lisa Davey; Xiang Ma; Vincent S Hau; Chi Wang; Jennifer Harmon; Jeanette Buehler; Erik Pearson; Shrena Patel; Yuuki Kaminoh; Scott Watkins; Ling Luo; Norman A Zabriskie; Paul S Bernstein; Wongil Cho; Andrea Schwager; David R Hinton; Michael L Klein; Sara C Hamon; Emily Simmons; Beifeng Yu; Betsy Campochiaro; Janet S Sunness; Peter Campochiaro; Lynn Jorde; Giovanni Parmigiani; Donald J Zack; Nicholas Katsanis; Jayakrishna Ambati; Kang Zhang
Journal:  N Engl J Med       Date:  2008-08-27       Impact factor: 91.245

9.  Age-related macular degeneration.

Authors:  Hanna R Coleman; Chi-Chao Chan; Frederick L Ferris; Emily Y Chew
Journal:  Lancet       Date:  2008-11-22       Impact factor: 79.321

10.  Cell-specific DNA methylation patterns of retina-specific genes.

Authors:  Shannath L Merbs; Miriam A Khan; Laszlo Hackler; Verity F Oliver; Jun Wan; Jiang Qian; Donald J Zack
Journal:  PLoS One       Date:  2012-03-05       Impact factor: 3.240

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  24 in total

Review 1.  Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease.

Authors:  Hyun-Jin Yang; Rinki Ratnapriya; Tiziana Cogliati; Jung-Woong Kim; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2015-02-07       Impact factor: 21.198

Review 2.  Differential Gene Expression in Age-Related Macular Degeneration.

Authors:  Denise J Morgan; Margaret M DeAngelis
Journal:  Cold Spring Harb Perspect Med       Date:  2014-10-23       Impact factor: 6.915

Review 3.  Epigenetic control of gene regulation during development and disease: A view from the retina.

Authors:  Ximena Corso-Díaz; Catherine Jaeger; Vijender Chaitankar; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2018-03-12       Impact factor: 21.198

Review 4.  The role of epigenetics in age-related macular degeneration.

Authors:  M Gemenetzi; A J Lotery
Journal:  Eye (Lond)       Date:  2014-09-19       Impact factor: 3.775

Review 5.  Seeing through VEGF: innate and adaptive immunity in pathological angiogenesis in the eye.

Authors:  Abdoulaye Sene; David Chin-Yee; Rajendra S Apte
Journal:  Trends Mol Med       Date:  2014-11-01       Impact factor: 11.951

6.  Differential DNA methylation identified in the blood and retina of AMD patients.

Authors:  Verity F Oliver; Andrew E Jaffe; Jin Song; Guohua Wang; Pingwu Zhang; Kari E Branham; Anand Swaroop; Charles G Eberhart; Donald J Zack; Jiang Qian; Shannath L Merbs
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

7.  Immunological Aspects of Age-Related Macular Degeneration.

Authors:  Michael J Allingham; Anna Loksztejn; Scott W Cousins; Priyatham S Mettu
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  Fetal e-cigarette exposure programs a neonatal brain hypoxic-ischemic sensitive phenotype via altering DNA methylation patterns and autophagy signaling pathway.

Authors:  Andrew Walayat; Yong Li; Yanyan Zhang; Yingjie Fu; Bailin Liu; Xuesi M Shao; Lubo Zhang; Daliao Xiao
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2021-09-15       Impact factor: 3.619

9.  Developments in Ocular Genetics: 2013 Annual Review.

Authors:  Inas F Aboobakar; R Rand Allingham
Journal:  Asia Pac J Ophthalmol (Phila)       Date:  2014 May-Jun

10.  Age-Related Macular Degeneration: From Epigenetics to Therapeutic Implications.

Authors:  Michael H Farkas; Margaret M DeAngelis
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 3.650

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