Literature DB >> 25342062

Differential Gene Expression in Age-Related Macular Degeneration.

Denise J Morgan1, Margaret M DeAngelis1.   

Abstract

Gene expression is the first step in ascribing function between an associated gene and disease. Understanding how variation in a gene influences expression, particularly in tissues affected by the disease, may help elucidate what influences the phenotypic outcome of that disease. Previous studies of the genetics of age-related macular degeneration (AMD) have identified several risk factors, but have not yet bridged the gap between gene association and identifying a specific mechanism or function that is involved in the pathogenesis of AMD. Advances in genomic technologies, such as RNA sequencing (RNA-seq), single cell RNA-seq, bilsulfite sequencing, and/or whole genome methylation, will be powerful tools for identifying genes/pathways that are differentially expressed in those with AMD versus those without AMD. These technologies should advance the field of AMD research so that appropriate preventive and therapeutic targets can be developed.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID: 25342062      PMCID: PMC4526725          DOI: 10.1101/cshperspect.a017210

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  76 in total

1.  Susceptibility genes for age-related maculopathy on chromosome 10q26.

Authors:  Johanna Jakobsdottir; Yvette P Conley; Daniel E Weeks; Tammy S Mah; Robert E Ferrell; Michael B Gorin
Journal:  Am J Hum Genet       Date:  2005-07-26       Impact factor: 11.025

2.  A rare nonsynonymous sequence variant in C3 is associated with high risk of age-related macular degeneration.

Authors:  Hannes Helgason; Patrick Sulem; Maheswara R Duvvari; Hongrong Luo; Gudmar Thorleifsson; Hreinn Stefansson; Ingileif Jonsdottir; Gisli Masson; Daniel F Gudbjartsson; G Bragi Walters; Olafur Th Magnusson; Augustine Kong; Thorunn Rafnar; Lambertus A Kiemeney; Frederieke E Schoenmaker-Koller; Ling Zhao; Camiel J F Boon; Yaojun Song; Sascha Fauser; Michelle Pei; Tina Ristau; Shirrina Patel; Sandra Liakopoulos; Johannes P H van de Ven; Carel B Hoyng; Henry Ferreyra; Yaou Duan; Paul S Bernstein; Asbjorg Geirsdottir; Gudleif Helgadottir; Einar Stefansson; Anneke I den Hollander; Kang Zhang; Fridbert Jonasson; Haraldur Sigurdsson; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2013-09-15       Impact factor: 38.330

3.  Complement factor H variant increases the risk of age-related macular degeneration.

Authors:  Jonathan L Haines; Michael A Hauser; Silke Schmidt; William K Scott; Lana M Olson; Paul Gallins; Kylee L Spencer; Shu Ying Kwan; Maher Noureddine; John R Gilbert; Nathalie Schnetz-Boutaud; Anita Agarwal; Eric A Postel; Margaret A Pericak-Vance
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

4.  Microarray analysis of gene expression in the aging human retina.

Authors:  Shigeo Yoshida; Beverly M Yashar; Suja Hiriyanna; Anand Swaroop
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

5.  Hypomethylation of the IL17RC promoter associates with age-related macular degeneration.

Authors:  Lai Wei; Baoying Liu; Jingsheng Tuo; Defen Shen; Ping Chen; Zhiyu Li; Xunxian Liu; Jia Ni; Pradeep Dagur; H Nida Sen; Shayma Jawad; Diamond Ling; Stanley Park; Sagarika Chakrabarty; Catherine Meyerle; Elvira Agron; Frederick L Ferris; Emily Y Chew; J Philip McCoy; Emily Blum; Peter J Francis; Michael L Klein; Robyn H Guymer; Paul N Baird; Chi-Chao Chan; Robert B Nussenblatt
Journal:  Cell Rep       Date:  2012-11-21       Impact factor: 9.423

6.  Whole-exome sequencing identifies rare, functional CFH variants in families with macular degeneration.

Authors:  Yi Yu; Michael P Triebwasser; Edwin K S Wong; Elizabeth C Schramm; Brett Thomas; Robyn Reynolds; Elaine R Mardis; John P Atkinson; Mark Daly; Soumya Raychaudhuri; David Kavanagh; Johanna M Seddon
Journal:  Hum Mol Genet       Date:  2014-05-20       Impact factor: 6.150

Review 7.  Clinical risk factors for age-related macular degeneration: a systematic review and meta-analysis.

Authors:  Usha Chakravarthy; Tien Y Wong; Astrid Fletcher; Elisabeth Piault; Christopher Evans; Gergana Zlateva; Ronald Buggage; Andreas Pleil; Paul Mitchell
Journal:  BMC Ophthalmol       Date:  2010-12-13       Impact factor: 2.209

8.  Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks.

Authors:  Aaron M Newman; Natasha B Gallo; Lisa S Hancox; Norma J Miller; Carolyn M Radeke; Michelle A Maloney; James B Cooper; Gregory S Hageman; Don H Anderson; Lincoln V Johnson; Monte J Radeke
Journal:  Genome Med       Date:  2012-02-24       Impact factor: 11.117

9.  A gene expression profile of the developing human retinal pigment epithelium.

Authors:  Zhongyu Zhang; Yan Zhang; Huizhen Xiao; Xiaolei Liang; Dawei Sun; Shaomin Peng
Journal:  Mol Vis       Date:  2012-12-15       Impact factor: 2.367

10.  Expression analysis of an evolutionarily conserved alternative splicing factor, Sfrs10, in age-related macular degeneration.

Authors:  Devi Krishna Priya Karunakaran; Abdul Rouf Banday; Qian Wu; Rahul Kanadia
Journal:  PLoS One       Date:  2013-09-30       Impact factor: 3.240

View more
  10 in total

Review 1.  RNA expression in human retina.

Authors:  Mingyao Li; Randy J Zauhar; Clare Grazal; Christine A Curcio; Margaret M DeAngelis; Dwight Stambolian
Journal:  Hum Mol Genet       Date:  2017-08-01       Impact factor: 6.150

Review 2.  The role of microRNAs in glaucoma.

Authors:  Karah M Greene; W Daniel Stamer; Yutao Liu
Journal:  Exp Eye Res       Date:  2021-12-27       Impact factor: 3.770

Review 3.  Genetics of age-related macular degeneration (AMD).

Authors:  Margaret M DeAngelis; Leah A Owen; Margaux A Morrison; Denise J Morgan; Mingyao Li; Akbar Shakoor; Albert Vitale; Sudha Iyengar; Dwight Stambolian; Ivana K Kim; Lindsay A Farrer
Journal:  Hum Mol Genet       Date:  2017-08-01       Impact factor: 6.150

Review 4.  Epigenetic Mechanisms of the Aging Human Retina.

Authors:  Katie L Pennington; Margaret M DeAngelis
Journal:  J Exp Neurosci       Date:  2016-02-03

Review 5.  Epidemiology of age-related macular degeneration (AMD): associations with cardiovascular disease phenotypes and lipid factors.

Authors:  Katie L Pennington; Margaret M DeAngelis
Journal:  Eye Vis (Lond)       Date:  2016-12-22

6.  Multimodal Regulation Orchestrates Normal and Complex Disease States in the Retina.

Authors:  A M Olivares; A S Jelcick; J Reinecke; B Leehy; A Haider; M A Morrison; L Cheng; D F Chen; M M DeAngelis; N B Haider
Journal:  Sci Rep       Date:  2017-04-06       Impact factor: 4.379

7.  The Utah Protocol for Postmortem Eye Phenotyping and Molecular Biochemical Analysis.

Authors:  Leah A Owen; Akbar Shakoor; Denise J Morgan; Andre A Hejazi; M Wade McEntire; Jared J Brown; Lindsay A Farrer; Ivana Kim; Albert Vitale; Margaret M DeAngelis
Journal:  Invest Ophthalmol Vis Sci       Date:  2019-03-01       Impact factor: 4.799

8.  ALPK1 missense pathogenic variant in five families leads to ROSAH syndrome, an ocular multisystem autosomal dominant disorder.

Authors:  Lloyd B Williams; Asif Javed; Amin Sabri; Denise J Morgan; Chad D Huff; John R Grigg; Xiu Ting Heng; Alexis J Khng; Iris H I M Hollink; Margaux A Morrison; Leah A Owen; Katherine Anderson; Krista Kinard; Rebecca Greenlees; Danica Novacic; H Nida Sen; Wadih M Zein; George M Rodgers; Albert T Vitale; Neena B Haider; Axel M Hillmer; Pauline C Ng; Anson Cheng; Linda Zheng; Mark C Gillies; Marjon van Slegtenhorst; P Martin van Hagen; Tom O A R Missotten; Gary L Farley; Michael Polo; James Malatack; Julie Curtin; Frank Martin; Susan Arbuckle; Stephen I Alexander; Megan Chircop; Sonia Davila; Kathleen B Digre; Robyn V Jamieson; Margaret M DeAngelis
Journal:  Genet Med       Date:  2019-04-10       Impact factor: 8.822

Review 9.  A systems biology approach towards understanding and treating non-neovascular age-related macular degeneration.

Authors:  James T Handa; Cathy Bowes Rickman; Andrew D Dick; Michael B Gorin; Joan W Miller; Cynthia A Toth; Marius Ueffing; Marco Zarbin; Lindsay A Farrer
Journal:  Nat Commun       Date:  2019-07-26       Impact factor: 14.919

10.  Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.

Authors:  Qingnan Liang; Rachayata Dharmat; Leah Owen; Akbar Shakoor; Yumei Li; Sangbae Kim; Albert Vitale; Ivana Kim; Denise Morgan; Shaoheng Liang; Nathaniel Wu; Ken Chen; Margaret M DeAngelis; Rui Chen
Journal:  Nat Commun       Date:  2019-12-17       Impact factor: 14.919

  10 in total

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